mRNA_P-wetherbeei_contig19722.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19722.1.1
Unique NamemRNA_P-wetherbeei_contig19722.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19722.1.1 vs. uniprot
Match: A0A521MFC8_9HYPH (Uncharacterized protein n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521MFC8_9HYPH)

HSP 1 Score: 227 bits (578), Expect = 4.100e-74
Identity = 99/150 (66.00%), Postives = 120/150 (80.00%), Query Frame = 1 
Query:    1 MPFLRKCGLVSMLGFFFVFGLSACEREYWPQRTWVTNAAENGSKRLPDGTLRYEKPFDTWVDNPKLAEAIRDEIQETGRERLIDRYEFECKPRPAADSCADCLSCTAIFWQWELSKSSFIKPGFVHRGDARVSVEFGPGTAVSAMTYWTK 450
            MP   K G  +ML  F   GL+ CEREYWPQRTWVT+AAENG ++LPDGT +Y+KPF+TWVDNP+LA+A+++EI ++G +R++DRYEFECKPRP    C DC SC A FWQWE S +SFIKPGF HRGDA VS++ GPG AVSAMTYWTK
Sbjct:    1 MPLHGKHGFAAMLVAFLAIGLAGCEREYWPQRTWVTSAAENGYEKLPDGTRQYQKPFNTWVDNPELAKALQEEIAKSGLDRVLDRYEFECKPRPTEGFCDDCRSCAAAFWQWERSTTSFIKPGFKHRGDALVSIQIGPGKAVSAMTYWTK 150
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19722.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A521MFC8_9HYPH4.100e-7466.00Uncharacterized protein n=1 Tax=Reyranella sp. Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19722contigP-wetherbeei_contig19722:384..836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size453
Hectar predicted targeting categorysignal peptide
Exons1
Cds size453
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186179.8482864-CDS-P-wetherbeei_contig19722:383..8361683186179.8482864-CDS-P-wetherbeei_contig19722:383..836Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19722 384..836 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19722.1.1prot_P-wetherbeei_contig19722.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19722 384..836 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19722.1.1

>prot_P-wetherbeei_contig19722.1.1 ID=prot_P-wetherbeei_contig19722.1.1|Name=mRNA_P-wetherbeei_contig19722.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
MPFLRKCGLVSMLGFFFVFGLSACEREYWPQRTWVTNAAENGSKRLPDGT
LRYEKPFDTWVDNPKLAEAIRDEIQETGRERLIDRYEFECKPRPAADSCA
DCLSCTAIFWQWELSKSSFIKPGFVHRGDARVSVEFGPGTAVSAMTYWTK
*
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mRNA from alignment at P-wetherbeei_contig19722:384..836-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19722.1.1 ID=mRNA_P-wetherbeei_contig19722.1.1|Name=mRNA_P-wetherbeei_contig19722.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig19722:384..836- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGTTTCTTCGAAAATGTGGCCTCGTCTCAATGCTGGGCTTTTTTTT
CGTCTTTGGCCTTTCGGCCTGCGAGCGCGAGTACTGGCCGCAGCGAACCT
GGGTGACGAACGCCGCTGAAAACGGTTCGAAGCGCCTGCCAGACGGGACC
TTGCGCTATGAAAAGCCGTTCGACACCTGGGTCGACAATCCAAAATTGGC
GGAAGCCATTCGTGACGAGATTCAGGAAACGGGGCGAGAGCGCCTCATAG
ACAGATACGAATTCGAGTGCAAACCGCGGCCGGCCGCGGATTCGTGTGCC
GATTGCCTGAGCTGTACGGCGATCTTTTGGCAGTGGGAGCTCAGCAAGTC
TTCGTTCATCAAGCCGGGATTCGTGCATCGAGGCGACGCCCGGGTCAGCG
TGGAGTTCGGACCAGGCACGGCTGTGAGTGCAATGACCTACTGGACAAAA
TAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19722:384..836-

>mRNA_P-wetherbeei_contig19722.1.1 ID=mRNA_P-wetherbeei_contig19722.1.1|Name=mRNA_P-wetherbeei_contig19722.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig19722:384..836- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGTTTCTTCGAAAATGTGGCCTCGTCTCAATGCTGGGCTTTTTTTT
CGTCTTTGGCCTTTCGGCCTGCGAGCGCGAGTACTGGCCGCAGCGAACCT
GGGTGACGAACGCCGCTGAAAACGGTTCGAAGCGCCTGCCAGACGGGACC
TTGCGCTATGAAAAGCCGTTCGACACCTGGGTCGACAATCCAAAATTGGC
GGAAGCCATTCGTGACGAGATTCAGGAAACGGGGCGAGAGCGCCTCATAG
ACAGATACGAATTCGAGTGCAAACCGCGGCCGGCCGCGGATTCGTGTGCC
GATTGCCTGAGCTGTACGGCGATCTTTTGGCAGTGGGAGCTCAGCAAGTC
TTCGTTCATCAAGCCGGGATTCGTGCATCGAGGCGACGCCCGGGTCAGCG
TGGAGTTCGGACCAGGCACGGCTGTGAGTGCAATGACCTACTGGACAAAA
TAA
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