mRNA_P-wetherbeei_contig1972.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1972.1.1
Unique NamemRNA_P-wetherbeei_contig1972.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1972.1.1 vs. uniprot
Match: D7FWU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU4_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.710e-7
Identity = 50/132 (37.88%), Postives = 68/132 (51.52%), Query Frame = 2 
Query: 2129 GRDRGDSDDGVSSGSDVVSHALVAAMPPPLHHG-------------TGHGDAPGSGGAQGEYLLLLVPSGAVDWGERSGDMRHAFNATASNENADTDGSGXXXXXXXXXSTGWLEIGCQVLNARLVRDVHFS 2485
            GRD G +  G + G D  S+      P P+HH               G GD   S  +  E+L +LVPS A+DWG  +  +R + N T+  +     G G    XXXXX + W+EI CQ+L+ARLV+DV FS
Sbjct:  112 GRDEGGAAFG-AGGDD--SNRPRRRGPAPMHHRGPSGAASPQRGFHAGGGDYLQSPSSDSEFLTMLVPSSALDWGPSTLAVRASLNGTSDGDG----GRGATAGXXXXXXSSWVEIDCQILSARLVQDVSFS 236
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BLAST of mRNA_P-wetherbeei_contig1972.1.1 vs. uniprot
Match: A0A6H5KBR4_9PHAE (Protein CASP (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR4_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 9.240e-5
Identity = 76/262 (29.01%), Postives = 111/262 (42.37%), Query Frame = 2 
Query: 1865 WVRGTTLPEKGSAGTLGTSYMFCPQAYGVMSPGLVPAPAKATYR------------RGGGXXXXXXXXXXXXXRAADAAVETVRSEAAVARVITTT------------AAVGGRD------RGDSDDGVSSGSDVV------------------SHALVAAMPPPLHHGTGHGDAP------GSG------GAQGEYLLLLVPSGAVDWGERSGDMRHAFNATASNENADTDGSGXXXXXXXXXSTGWLEIGCQVLNARLVR 2470
            +V G  LP +       TSY+FCP+AYG+MS G++   +KATY             RGG               A +  V  + +     R++               AAV   +        D++  V  G ++                   S+      P P+HH    G  P      GSG       +  E+L +LVPS ++DWG  +  +R + N T+     D+DG  XXXXXXXXX + W+EI CQ+L+ARLV+
Sbjct: 1053 YVAGAGLPSER------TSYVFCPEAYGMMSGGMIERASKATYDYHHPGARPCPAGRGGDGGVPEDGDSEFHGGAGEVKVNVIDARQERLRLLAADSPQVQPHAEDPHAAVDAAEYLALVSSSDANMDVDGGGEIYFGSAGDEGGAAFGEGGNDSNRPRRRGPAPMHHRGPSGATPQRGFHGGSGDYLQSPSSDSEFLTMLVPSSSLDWGPSTLAVRASLNGTS-----DSDGXXXXXXXXXXXXS-WVEIDCQILSARLVQ 1302
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1972.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWU4_ECTSI1.710e-737.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBR4_9PHAE9.240e-529.01Protein CASP (Fragment) n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1972contigP-wetherbeei_contig1972:1880..4683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2804
Hectar predicted targeting categoryother localisation
Exons1
Cds size2409
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186179.7749796-UTR-P-wetherbeei_contig1972:1879..19611683186179.7749796-UTR-P-wetherbeei_contig1972:1879..1961Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1972 1880..1961 +
1683186179.8050663-UTR-P-wetherbeei_contig1972:4370..46831683186179.8050663-UTR-P-wetherbeei_contig1972:4370..4683Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1972 4371..4683 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186179.786291-CDS-P-wetherbeei_contig1972:1961..43701683186179.786291-CDS-P-wetherbeei_contig1972:1961..4370Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1972 1962..4370 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1972.1.1prot_P-wetherbeei_contig1972.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1972 1962..4370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1972.1.1

>prot_P-wetherbeei_contig1972.1.1 ID=prot_P-wetherbeei_contig1972.1.1|Name=mRNA_P-wetherbeei_contig1972.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=803bp
MDPDPAGGAAGSDQEDLTPAQRRERRKIRNRVSARLHRERQKEHMDRLET
LLKEKDAALAAQKDGAATAERELRRQLEELREHNDALRRRVSELEAEHSA
FDAAVSEMDGITVPVAGDGPDAAAVGDVADLLQHVKVFRSPAYGAVAAPA
ATARSAASSDGYGTTTTAASGTDDSGDSSGDSDQEQGDTEDADVIIAAVP
GGPAGLAPAAPLSSPLEPLSRRGPIARQRSLGAADTEFFAQLDDIELADL
SGLGEEGIMDIDAELEAVAALDGSSSVALPLPLPSPVDGGHSGGGGGDGG
GRGRRGAGGVALFGLMSVFTIFGSGPFAPAVAPIWSRFGHLAGAGSAAVD
HNSSGPDGVGRVLVAAPPPGAEQHAVSLPLHNNGSAALWASREMWGSDAD
VRRRHGGGGGGRRGDSIGGSVGGGREWVLSPLESEPRRWRNMGGGSGAGS
PWRYREAAQLFGPDAWLLGEAGRVDCNVSHHILPKGGGAARLRGMVQPPP
GQERRHRRAATAAAGSAAVGAVKPWRPLHHQAVVGEVGGGGAGAAVGRDL
IAKEVDVYRPPGGCGGCAGGNQRALAAAAAAAAAAGGASCDKDGWVRGTT
LPEKGSAGTLGTSYMFCPQAYGVMSPGLVPAPAKATYRRGGGGGGSGAGG
SGSSGRAADAAVETVRSEAAVARVITTTAAVGGRDRGDSDDGVSSGSDVV
SHALVAAMPPPLHHGTGHGDAPGSGGAQGEYLLLLVPSGAVDWGERSGDM
RHAFNATASNENADTDGSGGGSGGNGGGSTGWLEIGCQVLNARLVRDVHF
SV*
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mRNA from alignment at P-wetherbeei_contig1972:1880..4683+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1972.1.1 ID=mRNA_P-wetherbeei_contig1972.1.1|Name=mRNA_P-wetherbeei_contig1972.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2804bp|location=Sequence derived from alignment at P-wetherbeei_contig1972:1880..4683+ (Phaeothamnion wetherbeei SAG_119_79)
CGCTGCCGGTGCCGCTGCTGCCGCATATGTCGCGCTCCCGGGGACCGATT
CCACTTATTCCTATGACAGCAGCCTTGGGGTTATGGACCCGGACCCTGCG
GGCGGCGCGGCGGGTTCAGACCAGGAGGACCTCACGCCAGCCCAGCGTCG
GGAGCGCCGAAAAATCCGCAACCGCGTCAGCGCGCGGCTGCACCGGGAGC
GGCAGAAGGAGCACATGGACCGCCTCGAGACGCTGCTCAAAGAGAAGGAC
GCCGCGCTCGCGGCGCAGAAGGATGGCGCCGCGACGGCGGAGCGGGAGCT
CCGGCGGCAGCTGGAGGAGCTGCGAGAGCATAACGACGCCCTGCGGCGGA
GGGTTTCCGAACTGGAGGCGGAGCACAGCGCCTTCGACGCCGCCGTTTCC
GAGATGGATGGCATAACCGTCCCCGTCGCCGGCGACGGCCCCGACGCGGC
AGCAGTAGGGGACGTGGCCGACCTTTTGCAGCACGTAAAAGTCTTCAGAA
GCCCTGCATATGGGGCCGTCGCGGCTCCGGCCGCAACGGCAAGGTCGGCT
GCGTCGAGCGATGGCTACGGCACCACCACCACCGCCGCTTCCGGAACCGA
CGACTCTGGCGACAGCTCCGGCGACTCAGACCAGGAGCAGGGCGATACAG
AAGACGCTGACGTCATTATTGCGGCTGTACCGGGCGGCCCCGCTGGGCTG
GCGCCGGCGGCGCCGCTCAGTTCGCCGCTTGAGCCCCTCTCCCGCCGCGG
GCCCATCGCCCGGCAACGCTCGCTGGGCGCCGCCGACACGGAATTCTTTG
CGCAGCTCGACGACATTGAGCTGGCGGACCTCAGCGGACTCGGCGAAGAA
GGCATAATGGACATCGACGCGGAATTGGAGGCGGTAGCCGCTCTTGACGG
TTCGTCGTCGGTGGCGCTGCCGCTGCCGCTACCCTCTCCTGTCGACGGCG
GGCACAGCGGCGGTGGCGGTGGGGACGGCGGGGGCAGGGGGCGCCGCGGC
GCTGGCGGCGTCGCGCTCTTCGGCCTCATGTCCGTCTTCACCATCTTCGG
CAGCGGCCCCTTCGCGCCCGCGGTGGCGCCCATCTGGTCGCGCTTCGGCC
ACTTGGCCGGCGCCGGCAGCGCCGCTGTGGACCACAACAGCTCCGGGCCA
GACGGCGTGGGACGGGTGCTTGTCGCCGCGCCGCCGCCGGGCGCGGAGCA
GCATGCCGTCTCGCTGCCGCTGCACAACAACGGCTCCGCCGCGCTGTGGG
CCTCCCGCGAGATGTGGGGCTCTGACGCAGACGTCCGGCGCCGCCACGGC
GGCGGGGGCGGCGGTCGCCGCGGCGACAGCATCGGTGGCAGCGTTGGCGG
CGGCCGGGAATGGGTCCTGTCGCCGCTGGAGTCGGAGCCACGGCGCTGGC
GGAACATGGGCGGTGGCAGTGGCGCGGGGTCACCCTGGCGGTACCGGGAG
GCGGCGCAGCTCTTCGGGCCGGACGCGTGGCTGCTCGGTGAGGCGGGCCG
CGTCGACTGCAACGTCTCCCACCACATACTGCCGAAGGGCGGCGGCGCGG
CGCGCCTGCGGGGAATGGTGCAGCCGCCGCCAGGACAAGAGCGTCGGCAT
CGCCGCGCTGCGACCGCTGCCGCCGGCAGCGCGGCGGTTGGCGCGGTCAA
GCCGTGGCGCCCGCTGCATCATCAGGCTGTTGTTGGTGAAGTCGGTGGCG
GCGGCGCGGGCGCCGCGGTGGGTAGAGACCTCATTGCCAAGGAGGTGGAC
GTGTATCGGCCACCGGGCGGCTGTGGAGGCTGCGCCGGCGGCAACCAGCG
GGCGCTGGCTGCGGCGGCGGCAGCGGCTGCTGCGGCCGGCGGCGCCAGCT
GCGACAAGGACGGCTGGGTGAGAGGGACTACCTTGCCAGAAAAGGGGTCA
GCCGGCACGCTCGGTACCTCGTACATGTTCTGCCCGCAGGCGTACGGCGT
CATGTCACCCGGGTTGGTGCCGGCGCCGGCCAAGGCGACGTACCGCCGCG
GTGGCGGCGGCGGAGGTAGCGGCGCAGGCGGCAGCGGCAGTAGCGGCCGT
GCTGCGGACGCCGCGGTGGAGACTGTGCGTTCTGAGGCTGCGGTGGCGCG
CGTCATCACGACCACGGCCGCCGTAGGCGGCCGCGATCGCGGCGATAGCG
ACGACGGCGTCAGCAGCGGCAGCGACGTCGTCTCTCACGCACTGGTGGCG
GCGATGCCGCCGCCGCTGCACCACGGCACGGGCCACGGCGACGCGCCCGG
CAGCGGCGGCGCACAAGGCGAGTACCTCCTTCTGCTGGTGCCAAGCGGCG
CGGTAGACTGGGGCGAGCGTTCCGGCGACATGCGGCACGCCTTCAACGCC
ACCGCCAGCAATGAAAACGCAGACACCGACGGCAGCGGCGGCGGGAGCGG
CGGGAACGGCGGCGGCAGCACGGGCTGGCTGGAGATCGGGTGCCAGGTGC
TCAACGCCCGCCTGGTTCGCGACGTGCATTTCTCCGTGTAGTTCTCTCTC
TCTCTGTGCTGTCCAACTATCTGTGGCGGTTCGATTTTGAGGCTCGAGGT
GGCGGGTCAAGGCCGGGCCGGCGCAAACGGAGGAAACAAGCGGGGGAGCG
GGGGTGGATTCGGATGGCGGCTCGCCAATATTGGGCAGGGGGCCAGAGCG
ATGGAAGTGGCAGTTACGGGGGCGCTGGCGGCTGGGGCGGGAATGGCGGT
TCGTTGCCACTCAGACGGTCATGTGATTATAGGCGGCGGGCTCTCTGCGG
TGGGCCGGCGGGTGAGGGGATGTGCGTGAGAGACGGAGCGCTGGAGCAGC
GGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1972:1880..4683+

>mRNA_P-wetherbeei_contig1972.1.1 ID=mRNA_P-wetherbeei_contig1972.1.1|Name=mRNA_P-wetherbeei_contig1972.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2409bp|location=Sequence derived from alignment at P-wetherbeei_contig1972:1880..4683+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACCCGGACCCTGCGGGCGGCGCGGCGGGTTCAGACCAGGAGGACCT
CACGCCAGCCCAGCGTCGGGAGCGCCGAAAAATCCGCAACCGCGTCAGCG
CGCGGCTGCACCGGGAGCGGCAGAAGGAGCACATGGACCGCCTCGAGACG
CTGCTCAAAGAGAAGGACGCCGCGCTCGCGGCGCAGAAGGATGGCGCCGC
GACGGCGGAGCGGGAGCTCCGGCGGCAGCTGGAGGAGCTGCGAGAGCATA
ACGACGCCCTGCGGCGGAGGGTTTCCGAACTGGAGGCGGAGCACAGCGCC
TTCGACGCCGCCGTTTCCGAGATGGATGGCATAACCGTCCCCGTCGCCGG
CGACGGCCCCGACGCGGCAGCAGTAGGGGACGTGGCCGACCTTTTGCAGC
ACGTAAAAGTCTTCAGAAGCCCTGCATATGGGGCCGTCGCGGCTCCGGCC
GCAACGGCAAGGTCGGCTGCGTCGAGCGATGGCTACGGCACCACCACCAC
CGCCGCTTCCGGAACCGACGACTCTGGCGACAGCTCCGGCGACTCAGACC
AGGAGCAGGGCGATACAGAAGACGCTGACGTCATTATTGCGGCTGTACCG
GGCGGCCCCGCTGGGCTGGCGCCGGCGGCGCCGCTCAGTTCGCCGCTTGA
GCCCCTCTCCCGCCGCGGGCCCATCGCCCGGCAACGCTCGCTGGGCGCCG
CCGACACGGAATTCTTTGCGCAGCTCGACGACATTGAGCTGGCGGACCTC
AGCGGACTCGGCGAAGAAGGCATAATGGACATCGACGCGGAATTGGAGGC
GGTAGCCGCTCTTGACGGTTCGTCGTCGGTGGCGCTGCCGCTGCCGCTAC
CCTCTCCTGTCGACGGCGGGCACAGCGGCGGTGGCGGTGGGGACGGCGGG
GGCAGGGGGCGCCGCGGCGCTGGCGGCGTCGCGCTCTTCGGCCTCATGTC
CGTCTTCACCATCTTCGGCAGCGGCCCCTTCGCGCCCGCGGTGGCGCCCA
TCTGGTCGCGCTTCGGCCACTTGGCCGGCGCCGGCAGCGCCGCTGTGGAC
CACAACAGCTCCGGGCCAGACGGCGTGGGACGGGTGCTTGTCGCCGCGCC
GCCGCCGGGCGCGGAGCAGCATGCCGTCTCGCTGCCGCTGCACAACAACG
GCTCCGCCGCGCTGTGGGCCTCCCGCGAGATGTGGGGCTCTGACGCAGAC
GTCCGGCGCCGCCACGGCGGCGGGGGCGGCGGTCGCCGCGGCGACAGCAT
CGGTGGCAGCGTTGGCGGCGGCCGGGAATGGGTCCTGTCGCCGCTGGAGT
CGGAGCCACGGCGCTGGCGGAACATGGGCGGTGGCAGTGGCGCGGGGTCA
CCCTGGCGGTACCGGGAGGCGGCGCAGCTCTTCGGGCCGGACGCGTGGCT
GCTCGGTGAGGCGGGCCGCGTCGACTGCAACGTCTCCCACCACATACTGC
CGAAGGGCGGCGGCGCGGCGCGCCTGCGGGGAATGGTGCAGCCGCCGCCA
GGACAAGAGCGTCGGCATCGCCGCGCTGCGACCGCTGCCGCCGGCAGCGC
GGCGGTTGGCGCGGTCAAGCCGTGGCGCCCGCTGCATCATCAGGCTGTTG
TTGGTGAAGTCGGTGGCGGCGGCGCGGGCGCCGCGGTGGGTAGAGACCTC
ATTGCCAAGGAGGTGGACGTGTATCGGCCACCGGGCGGCTGTGGAGGCTG
CGCCGGCGGCAACCAGCGGGCGCTGGCTGCGGCGGCGGCAGCGGCTGCTG
CGGCCGGCGGCGCCAGCTGCGACAAGGACGGCTGGGTGAGAGGGACTACC
TTGCCAGAAAAGGGGTCAGCCGGCACGCTCGGTACCTCGTACATGTTCTG
CCCGCAGGCGTACGGCGTCATGTCACCCGGGTTGGTGCCGGCGCCGGCCA
AGGCGACGTACCGCCGCGGTGGCGGCGGCGGAGGTAGCGGCGCAGGCGGC
AGCGGCAGTAGCGGCCGTGCTGCGGACGCCGCGGTGGAGACTGTGCGTTC
TGAGGCTGCGGTGGCGCGCGTCATCACGACCACGGCCGCCGTAGGCGGCC
GCGATCGCGGCGATAGCGACGACGGCGTCAGCAGCGGCAGCGACGTCGTC
TCTCACGCACTGGTGGCGGCGATGCCGCCGCCGCTGCACCACGGCACGGG
CCACGGCGACGCGCCCGGCAGCGGCGGCGCACAAGGCGAGTACCTCCTTC
TGCTGGTGCCAAGCGGCGCGGTAGACTGGGGCGAGCGTTCCGGCGACATG
CGGCACGCCTTCAACGCCACCGCCAGCAATGAAAACGCAGACACCGACGG
CAGCGGCGGCGGGAGCGGCGGGAACGGCGGCGGCAGCACGGGCTGGCTGG
AGATCGGGTGCCAGGTGCTCAACGCCCGCCTGGTTCGCGACGTGCATTTC
TCCGTGTAG
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