mRNA_P-wetherbeei_contig19709.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19709.1.1
Unique NamemRNA_P-wetherbeei_contig19709.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19709.1.1 vs. uniprot
Match: A0A429WYG2_9BURK (Nuclear transport factor 2 family protein n=2 Tax=Variovorax TaxID=34072 RepID=A0A429WYG2_9BURK)

HSP 1 Score: 142 bits (358), Expect = 8.580e-42
Identity = 67/100 (67.00%), Postives = 81/100 (81.00%), Query Frame = 1
Query:   10 LRPTDAAVIARACYVAYAKKDRAAIEALIAPDFHFTSPLDNRLDRKTYFARCWPNSERIAGYDFVHVLSDGERVFVTYETRTEGG-RFRNTEILTVRGGQ 306
            + P+D A +A+ACY AY KKDRAAIEAL+A DFHFTSPLDNRLDR TY  RCWPNS+    +++V+++ DG+RVFVTYE R  GG RFRNTEILTVR G+
Sbjct:    1 MNPSDKAEVAKACYEAYVKKDRAAIEALLAEDFHFTSPLDNRLDRATYLERCWPNSKAAEAFEYVNLVEDGDRVFVTYEARNTGGHRFRNTEILTVRSGR 100          
BLAST of mRNA_P-wetherbeei_contig19709.1.1 vs. uniprot
Match: A0A6P2E6S7_9BURK (Ketosteroid isomerase-related protein n=2 Tax=unclassified Variovorax TaxID=663243 RepID=A0A6P2E6S7_9BURK)

HSP 1 Score: 140 bits (352), Expect = 7.470e-41
Identity = 66/97 (68.04%), Postives = 76/97 (78.35%), Query Frame = 1
Query:   19 TDAAVIARACYVAYAKKDRAAIEALIAPDFHFTSPLDNRLDRKTYFARCWPNSERIAGYDFVHVLSDGERVFVTYETRTEGG-RFRNTEILTVRGGQ 306
            TD   + +ACY AY  KDRAAIEAL+A DFHFTSPLDNRLDR  YFARCWPNSE   G+D+VH++ DG RVFVTYE R +GG RFRNTE+LT   G+
Sbjct:    6 TDPIALVKACYAAYVSKDRAAIEALLADDFHFTSPLDNRLDRAAYFARCWPNSENTEGFDYVHLVQDGPRVFVTYEGRVKGGHRFRNTELLTTCDGK 102          
BLAST of mRNA_P-wetherbeei_contig19709.1.1 vs. uniprot
Match: A0A1I3ZIE9_9HYPH (Ketosteroid isomerase-related protein n=1 Tax=Mesorhizobium albiziae TaxID=335020 RepID=A0A1I3ZIE9_9HYPH)

HSP 1 Score: 139 bits (350), Expect = 1.290e-40
Identity = 67/97 (69.07%), Postives = 80/97 (82.47%), Query Frame = 1
Query:   19 TDAAVIARACYVAYAKKDRAAIEALIAPDFHFTSPLDNRLDRKTYFARCWPNSERIAGYDFVHVLSDGERVFVTYE-TRTEGGRFRNTEILTVRGGQ 306
            +D   IA+  Y AY  KDRAAIEA+IA DFHFTSPLDNR+DRKTYF RCWPNSE I+G+++ H++ +G+RVFVTYE T T G RFRNTEILTVRGG+
Sbjct:    3 SDPIAIAKKSYQAYVDKDRAAIEAVIADDFHFTSPLDNRIDRKTYFERCWPNSETISGFEYKHLVQEGDRVFVTYEGTGTTGKRFRNTEILTVRGGR 99          
BLAST of mRNA_P-wetherbeei_contig19709.1.1 vs. uniprot
Match: UPI0019CF433E (Nuclear transport factor 2 family protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=UPI0019CF433E)

HSP 1 Score: 137 bits (346), Expect = 5.250e-40
Identity = 67/98 (68.37%), Postives = 73/98 (74.49%), Query Frame = 1
Query:   16 PTDAAVIARACYVAYAKKDRAAIEALIAPDFHFTSPLDNRLDRKTYFARCWPNSERIAGYDFVHVLSDGERVFVTYETRTEGG-RFRNTEILTVRGGQ 306
            P D A +ARACY AY   DRAA+E LIA DFHFTSPLDNRLDR  YFARCWPN   IAG+ FV V + G  VFVTY   T GG RFRNTE+LT+RGGQ
Sbjct:    3 PDDPAAVARACYQAYVDNDRAALEMLIAADFHFTSPLDNRLDRAAYFARCWPNGREIAGFTFVRVAAVGNEVFVTYVGETRGGKRFRNTEVLTIRGGQ 100          
BLAST of mRNA_P-wetherbeei_contig19709.1.1 vs. uniprot
Match: A0A2S9QGR0_9HYPH (Ketosteroid isomerase n=2 Tax=Labrys TaxID=204476 RepID=A0A2S9QGR0_9HYPH)

HSP 1 Score: 137 bits (346), Expect = 6.700e-40
Identity = 65/95 (68.42%), Postives = 74/95 (77.89%), Query Frame = 1
Query:   22 DAAVIARACYVAYAKKDRAAIEALIAPDFHFTSPLDNRLDRKTYFARCWPNSERIAGYDFVHVLSDGERVFVTYETRTEGGRFRNTEILTVRGGQ 306
            D   + R  Y AY   +RAAIE LIAPDFHF+SP DNRLDR TYF RCWPNS+ I G+DFVH+L+DG+RVFVTYE R   G FRNTE+LTVRGGQ
Sbjct:   13 DPITVVRKVYKAYVDGNRAAIEPLIAPDFHFSSPRDNRLDRDTYFQRCWPNSQAITGFDFVHLLADGDRVFVTYEGRGNQGGFRNTEVLTVRGGQ 107          
BLAST of mRNA_P-wetherbeei_contig19709.1.1 vs. uniprot
Match: UPI001CCD828F (nuclear transport factor 2 family protein n=1 Tax=Phyllobacterium sp. 2063 TaxID=2875708 RepID=UPI001CCD828F)

HSP 1 Score: 135 bits (340), Expect = 4.570e-39
Identity = 65/96 (67.71%), Postives = 77/96 (80.21%), Query Frame = 1
Query:   22 DAAVIARACYVAYAKKDRAAIEALIAPDFHFTSPLDNRLDRKTYFARCWPNSERIAGYDFVHVLSDGERVFVTYETR-TEGGRFRNTEILTVRGGQ 306
            D A +ARA Y AY  KDRAAIE LIA DFHFTSPLDNR+DR  YF RCWPNS  IAG++F+H++  G++VFVTYE R T+G RFRNTEILT+R G+
Sbjct:    4 DMAEVARATYEAYVAKDRAAIELLIAEDFHFTSPLDNRIDRAAYFERCWPNSRSIAGFEFIHLVPAGDKVFVTYEGRSTDGHRFRNTEILTIRNGK 99          
BLAST of mRNA_P-wetherbeei_contig19709.1.1 vs. uniprot
Match: A0A4Q1W137_9HYPH (Ketosteroid isomerase n=2 Tax=unclassified Bosea TaxID=2653178 RepID=A0A4Q1W137_9HYPH)

HSP 1 Score: 135 bits (339), Expect = 7.110e-39
Identity = 66/98 (67.35%), Postives = 78/98 (79.59%), Query Frame = 1
Query:   16 PTDAAVIARACYVAYAKKDRAAIEALIAPDFHFTSPLDNRLDRKTYFARCWPNSERIAGYDFVHVLSDGERVFVTYETRTEGGR-FRNTEILTVRGGQ 306
            P DA+ +ARACY AY  KDRAA++ALIA DFHF+SPLDNRLDR+TYF RCWPNSERI      H++  GE VFVTYE  + GG+ FRNTEILT+RGG+
Sbjct:    2 PDDASDLARACYQAYVDKDRAALDALIAEDFHFSSPLDNRLDRETYFERCWPNSERIRSCTLKHLIPIGETVFVTYEGESIGGKGFRNTEILTIRGGK 99          
BLAST of mRNA_P-wetherbeei_contig19709.1.1 vs. uniprot
Match: B1G9P9_PARG4 (SnoaL-like domain-containing protein n=6 Tax=Burkholderiaceae TaxID=119060 RepID=B1G9P9_PARG4)

HSP 1 Score: 132 bits (333), Expect = 5.310e-38
Identity = 68/96 (70.83%), Postives = 74/96 (77.08%), Query Frame = 1
Query:   22 DAAVIARACYVAYAKKDRAAIEALIAPDFHFTSPLDNRLDRKTYFARCWPNSERIAGYDFVHVLSDGERVFVTYETRTEGGR-FRNTEILTVRGGQ 306
            D A IARA Y+AY +KDRAAIEALI  DFHFTSPLDNRLDR TYF RCWPNSE I  + FV V+  GE+VFV YE  T G R FRNTE LTVRGG+
Sbjct:    4 DPADIARASYLAYVRKDRAAIEALIGADFHFTSPLDNRLDRSTYFTRCWPNSETITDFQFVDVVVHGEQVFVVYEATTLGSRRFRNTERLTVRGGK 99          
BLAST of mRNA_P-wetherbeei_contig19709.1.1 vs. uniprot
Match: A0A839U7N6_9HYPH (Ketosteroid isomerase-like protein n=3 Tax=Phyllobacterium TaxID=28100 RepID=A0A839U7N6_9HYPH)

HSP 1 Score: 132 bits (332), Expect = 7.770e-38
Identity = 66/96 (68.75%), Postives = 75/96 (78.12%), Query Frame = 1
Query:   22 DAAVIARACYVAYAKKDRAAIEALIAPDFHFTSPLDNRLDRKTYFARCWPNSERIAGYDFVHVLSDGERVFVTYETR-TEGGRFRNTEILTVRGGQ 306
            D   IARA Y AY  KDRAAIEALIA DF FTSPLDNR+DR TYFARCWPNSE +  ++F+H+L   ++VFVTYE R T+G RFRNTEIL VR GQ
Sbjct:    4 DITEIARASYEAYVAKDRAAIEALIAEDFRFTSPLDNRIDRATYFARCWPNSETVESFEFIHLLPYADKVFVTYEGRNTDGHRFRNTEILVVRDGQ 99          
BLAST of mRNA_P-wetherbeei_contig19709.1.1 vs. uniprot
Match: A0A0Q8T9B8_9BURK (Ketosteroid isomerase n=3 Tax=Acidovorax TaxID=12916 RepID=A0A0Q8T9B8_9BURK)

HSP 1 Score: 132 bits (331), Expect = 9.780e-38
Identity = 63/94 (67.02%), Postives = 74/94 (78.72%), Query Frame = 1
Query:   22 DAAVIARACYVAYAKKDRAAIEALIAPDFHFTSPLDNRLDRKTYFARCWPNSERIAGYDFVHVLSDGERVFVTYE-TRTEGGRFRNTEILTVRG 300
            DA  + RA Y AY +KDR AIEALI  DFHF+SPLDNR+DR TYFARCWPNSE I+G+ F+ ++  G  VFVTYE TR  GGRFRNTE++TVRG
Sbjct:    3 DATALVRASYEAYVRKDREAIEALIDQDFHFSSPLDNRIDRATYFARCWPNSESISGFQFIRLVQQGPAVFVTYEGTRQGGGRFRNTEVVTVRG 96          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19709.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A429WYG2_9BURK8.580e-4267.00Nuclear transport factor 2 family protein n=2 Tax=... [more]
A0A6P2E6S7_9BURK7.470e-4168.04Ketosteroid isomerase-related protein n=2 Tax=uncl... [more]
A0A1I3ZIE9_9HYPH1.290e-4069.07Ketosteroid isomerase-related protein n=1 Tax=Meso... [more]
UPI0019CF433E5.250e-4068.37Nuclear transport factor 2 family protein n=1 Tax=... [more]
A0A2S9QGR0_9HYPH6.700e-4068.42Ketosteroid isomerase n=2 Tax=Labrys TaxID=204476 ... [more]
UPI001CCD828F4.570e-3967.71nuclear transport factor 2 family protein n=1 Tax=... [more]
A0A4Q1W137_9HYPH7.110e-3967.35Ketosteroid isomerase n=2 Tax=unclassified Bosea T... [more]
B1G9P9_PARG45.310e-3870.83SnoaL-like domain-containing protein n=6 Tax=Burkh... [more]
A0A839U7N6_9HYPH7.770e-3868.75Ketosteroid isomerase-like protein n=3 Tax=Phyllob... [more]
A0A0Q8T9B8_9BURK9.780e-3867.02Ketosteroid isomerase n=3 Tax=Acidovorax TaxID=129... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19709contigP-wetherbeei_contig19709:964..1269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1169143.KB911037_gene3845
PFAMsSnoaL_2
Model size306
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.02e-38
EggNOG OGsCOG3631@1|root,COG3631@2|Bacteria,1N028@1224|Proteobacteria,2W9MI@28216|Betaproteobacteria,1K9XF@119060|Burkholderiaceae
DescriptionSnoaL-like domain
Cds size306
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186179.6605783-CDS-P-wetherbeei_contig19709:963..12691683186179.6605783-CDS-P-wetherbeei_contig19709:963..1269Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19709 964..1269 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19709.1.1prot_P-wetherbeei_contig19709.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19709 964..1269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19709.1.1

>prot_P-wetherbeei_contig19709.1.1 ID=prot_P-wetherbeei_contig19709.1.1|Name=mRNA_P-wetherbeei_contig19709.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=102bp
MTDLRPTDAAVIARACYVAYAKKDRAAIEALIAPDFHFTSPLDNRLDRKT
YFARCWPNSERIAGYDFVHVLSDGERVFVTYETRTEGGRFRNTEILTVRG
GQ
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mRNA from alignment at P-wetherbeei_contig19709:964..1269+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19709.1.1 ID=mRNA_P-wetherbeei_contig19709.1.1|Name=mRNA_P-wetherbeei_contig19709.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig19709:964..1269+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGACCTCAGGCCTACCGATGCCGCCGTCATCGCCCGCGCCTGTTA CGTCGCCTATGCCAAAAAGGACCGCGCCGCGATCGAGGCGCTGATCGCGC CGGATTTCCATTTCACCAGCCCGCTCGACAACCGCCTCGACCGCAAGACC TACTTCGCGCGGTGCTGGCCGAACAGCGAGAGGATCGCAGGCTACGACTT CGTCCATGTGCTGTCCGACGGCGAGCGCGTATTCGTCACCTATGAGACGC GGACCGAGGGCGGGCGCTTTCGCAACACCGAGATCCTGACGGTGCGGGGC GGCCAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19709:964..1269+

>mRNA_P-wetherbeei_contig19709.1.1 ID=mRNA_P-wetherbeei_contig19709.1.1|Name=mRNA_P-wetherbeei_contig19709.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig19709:964..1269+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGACCTCAGGCCTACCGATGCCGCCGTCATCGCCCGCGCCTGTTA
CGTCGCCTATGCCAAAAAGGACCGCGCCGCGATCGAGGCGCTGATCGCGC
CGGATTTCCATTTCACCAGCCCGCTCGACAACCGCCTCGACCGCAAGACC
TACTTCGCGCGGTGCTGGCCGAACAGCGAGAGGATCGCAGGCTACGACTT
CGTCCATGTGCTGTCCGACGGCGAGCGCGTATTCGTCACCTATGAGACGC
GGACCGAGGGCGGGCGCTTTCGCAACACCGAGATCCTGACGGTGCGGGGC
GGCCAA
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