mRNA_P-wetherbeei_contig1970.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1970.1.3
Unique NamemRNA_P-wetherbeei_contig1970.1.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1970.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1970contigP-wetherbeei_contig1970:1346..2943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1257
Hectar predicted targeting categoryother localisation
Exons2
Cds size729
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186179.4677393-UTR-P-wetherbeei_contig1970:1345..16001683186179.4677393-UTR-P-wetherbeei_contig1970:1345..1600Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1970 1346..1600 -
1683186179.5071473-UTR-P-wetherbeei_contig1970:2670..29431683186179.5071473-UTR-P-wetherbeei_contig1970:2670..2943Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1970 2671..2943 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186179.4851482-CDS-P-wetherbeei_contig1970:1600..16891683186179.4851482-CDS-P-wetherbeei_contig1970:1600..1689Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1970 1601..1689 -
1683186179.4978194-CDS-P-wetherbeei_contig1970:2030..26701683186179.4978194-CDS-P-wetherbeei_contig1970:2030..2670Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1970 2031..2670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1970.1.3prot_P-wetherbeei_contig1970.1.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1970 1601..2670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1970.1.3

>prot_P-wetherbeei_contig1970.1.3 ID=prot_P-wetherbeei_contig1970.1.3|Name=mRNA_P-wetherbeei_contig1970.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=243bp
MAFAWYSSRQRRHHRDSGAETRWQPFIVRSGSRDPCRKRCSVMCRLVCSE
LFFGYLFPARDGRDHFGINAKLLRCVYLRGMTTCKHHVAFRRGRRRRRFI
AARSCKAACCLVGFGDWRFLASRSYWDWISLTSNLFVLSRVSWPRPTDFP
DTCSSRSSSVISLSPRRPLLRHRTERSISHGGPSGCVLRGARTAGWGWPR
CPPRACRSQGPRQDDLRDARPEGAACLAVPADDGGRRVSFDA*
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mRNA from alignment at P-wetherbeei_contig1970:1346..2943-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1970.1.3 ID=mRNA_P-wetherbeei_contig1970.1.3|Name=mRNA_P-wetherbeei_contig1970.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1598bp|location=Sequence derived from alignment at P-wetherbeei_contig1970:1346..2943- (Phaeothamnion wetherbeei SAG_119_79)
GGCCGGCTGCCTAGTGTCTCGCCCGCTGCCACCGCCCCCGCCGCCGGCGC
CGCTGCCACCGCGGATACCGCCGCCGCCGCCGCTGCTGCCACTGCGCCGC
CAACACTGCTTGACCGATACTGCATCTCCTCGTGTTGATACTCAAACGGT
CGGTTATTGGCGCTCTCGGCCCTCTCGGTCGGTCGGAAAAGGCCATCAGG
GAATGCAGTTGACGCCGGCGGCTTGACCGTGCCCCTGTTGTGCCAAAGCG
AGCCTTTTTAGGGTCCACATCACATGGCATTTGCGTGGTACTCATCCAGA
CAACGCCGTCATCACCGAGATTCGGGGGCGGAAACGCGTTGGCAGCCTTT
CATAGTCAGAAGCGGTTCACGAGACCCATGCCGAAAGCGATGTTCAGTGA
TGTGCCGTCTGGTATGCTCAGAGCTTTTCTTTGGCTATCTCTTTCCTGCC
CGGGATGGAAGAGACCATTTTGGGATTAACGCGAAGTTGCTGAGGTGCGT
TTATCTAAGGGGAATGACAACTTGTAAACATCATGTGGCATTCCGCCGCG
GCCGCCGCCGCCGCCGCTTCATCGCCGCCCGCAGCTGCAAGGCGGCCTGC
TGCCTCGTCGGTTTTGGAGACTGGCGTTTCCTGGCGTCTCGTTCCTATTG
GGACTGGATCTCATTAACATCGAACTTATTTGTTCTTTCCCGCGTCTCTT
GGCCGCGCCCAACCGACTTTCCCGATACTTGCTCTTCTCGTTCGTCCTCC
GTGATTTCTCTCAGTCCCCGCCGTCCTCTGCTCCGGCACCGGACAGAACG
ATCCATATCGCATGGTGGCCCATCTGGGTGCGTCCTTCGCGGCGCTCGCA
CTGCTGGTTGGGGCTGGCCTCGATGCCCTCCACGGGCCTGCCGCTCCCAA
GGCCCTCGCCAAGGTAGGTACCGTCGGATCGGTGGGCGGTCGGTTTCGGG
CAGTCACAGAAGGTGGTTAAAGAAGCGGTGACAGAGATGTTGAATAGCTT
TCGGCAGCTGAGGCACGATTTCTTGAAGGTCTTGGGGCGATGCGGGCATC
TGAGCGTGTGCGCTAGCCTGCGAAAGACTTGTTCACGGTAATTATTGGTT
TAGTGTGCGTTGCTGAGTAGGAATGGTAGCGGCCAAGGAGGGCAGCTAGA
GCCTAGAATCCGTGCATCGCTCGTGCCTCCCACCTCTTTCCAATTTTTCT
TTTTATCTTCTCTGCCCTTCACCCTCTTCTCGCCTGCCGATCCGACTGCT
GCAGATGATCTGCGGGACGCACGACCCGAGGGTGCTGCGTGCCTTGCCGT
CCCTGCAGATGACGGTGGCCGGCGGGTTTCTTTTGATGCGTGAGCTAGAT
AAATCGTCAGTGTAGTCTTCGGGGCTGCATTACGTTCGCAAGAGGAAGAA
TAGTTGGCTGTCATGTGTGCCTGCCGGTGAATTCTTCATTGAAAGTGCTC
GCTAGGGTTGCAGCAGGTTCTTTTGGAGCCCGGGCACGGCGACCGTGGAT
AGAACGCTGCGCCTCTAGGGCAGCTGCCTCACAGCGTCCCGCGTGCTGCA
AACCCTCTCGACTTACCCGTTTGATGATCGTCCAAAGGCCATGCCCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1970:1346..2943-

>mRNA_P-wetherbeei_contig1970.1.3 ID=mRNA_P-wetherbeei_contig1970.1.3|Name=mRNA_P-wetherbeei_contig1970.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=729bp|location=Sequence derived from alignment at P-wetherbeei_contig1970:1346..2943- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCATTTGCGTGGTACTCATCCAGACAACGCCGTCATCACCGAGATTC
GGGGGCGGAAACGCGTTGGCAGCCTTTCATAGTCAGAAGCGGTTCACGAG
ACCCATGCCGAAAGCGATGTTCAGTGATGTGCCGTCTGGTATGCTCAGAG
CTTTTCTTTGGCTATCTCTTTCCTGCCCGGGATGGAAGAGACCATTTTGG
GATTAACGCGAAGTTGCTGAGGTGCGTTTATCTAAGGGGAATGACAACTT
GTAAACATCATGTGGCATTCCGCCGCGGCCGCCGCCGCCGCCGCTTCATC
GCCGCCCGCAGCTGCAAGGCGGCCTGCTGCCTCGTCGGTTTTGGAGACTG
GCGTTTCCTGGCGTCTCGTTCCTATTGGGACTGGATCTCATTAACATCGA
ACTTATTTGTTCTTTCCCGCGTCTCTTGGCCGCGCCCAACCGACTTTCCC
GATACTTGCTCTTCTCGTTCGTCCTCCGTGATTTCTCTCAGTCCCCGCCG
TCCTCTGCTCCGGCACCGGACAGAACGATCCATATCGCATGGTGGCCCAT
CTGGGTGCGTCCTTCGCGGCGCTCGCACTGCTGGTTGGGGCTGGCCTCGA
TGCCCTCCACGGGCCTGCCGCTCCCAAGGCCCTCGCCAAGATGATCTGCG
GGACGCACGACCCGAGGGTGCTGCGTGCCTTGCCGTCCCTGCAGATGACG
GTGGCCGGCGGGTTTCTTTTGATGCGTGA
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