mRNA_P-wetherbeei_contig197.5.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig197.5.2 vs. uniprot
Match: A0A835ZJ13_9STRA (Translation protein SH3-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ13_9STRA) HSP 1 Score: 103 bits (256), Expect = 1.470e-21 Identity = 48/92 (52.17%), Postives = 73/92 (79.35%), Query Frame = 2
Query: 974 QMLPWATSDRAEVIRGVVLGQNRKGADSSVLLLDVIAGEGVERRIPLHSPLIKSITVLQESFIKTGREKGRRVRRAKIYYLRDLDSNFYRVT 1249
QMLP+ T+ +AE +RG+VLG+ ++G SS ++ DV+ E +ERR+PL+SPL+KSITVL+ I G+++G+RVR +KIYYLR+LD+ + +VT
Sbjct: 93 QMLPYMTAPKAEPVRGIVLGRFKRGIASSFIVRDVLYDEAIERRVPLYSPLLKSITVLKRRAIYEGKQEGKRVRPSKIYYLRNLDNKYSQVT 184
BLAST of mRNA_P-wetherbeei_contig197.5.2 vs. uniprot
Match: A0A7S2P9J5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P9J5_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 1.230e-19 Identity = 46/83 (55.42%), Postives = 62/83 (74.70%), Query Frame = 2
Query: 1001 RAEVIRGVVLGQNRKGADSSVLLLDVIAGEGVERRIPLHSPLIKSITVLQESFIKTGREKGRRVRRAKIYYLRDLDSNFYRVT 1249
R + IRGVVLG+ KG D+ + L DV+ GE VER++ LHSP++KS+ VL+E F+ G++KGRRV+RAK+YYLRD RVT
Sbjct: 82 RYDKIRGVVLGRENKGLDTGIYLKDVLFGEHVERKVKLHSPMVKSLKVLEEGFVNRGKKKGRRVKRAKLYYLRDRKPEETRVT 164
BLAST of mRNA_P-wetherbeei_contig197.5.2 vs. uniprot
Match: K0SBD7_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBD7_THAOC) HSP 1 Score: 99.8 bits (247), Expect = 1.430e-19 Identity = 49/81 (60.49%), Postives = 62/81 (76.54%), Query Frame = 2
Query: 1007 EVIRGVVLGQNRKGADSSVLLLDVIAGEGVERRIPLHSPLIKSITVLQESFIKTGREKGRRVRRAKIYYLRDLDSNFYRVT 1249
E IRGVVLG++ KG D+S+ L DV+ GE VER++ LHSPL+KS+ VL+E F+ GR KGRRV+RAK+YYLRD RVT
Sbjct: 199 EKIRGVVLGRHNKGLDTSINLRDVLFGEPVERKVKLHSPLVKSLKVLEEGFVNRGRRKGRRVKRAKLYYLRDRKPEETRVT 279
BLAST of mRNA_P-wetherbeei_contig197.5.2 vs. uniprot
Match: B8BTE2_THAPS (50S ribosomal protein l19-like protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTE2_THAPS) HSP 1 Score: 95.1 bits (235), Expect = 5.080e-19 Identity = 45/79 (56.96%), Postives = 60/79 (75.95%), Query Frame = 2
Query: 1013 IRGVVLGQNRKGADSSVLLLDVIAGEGVERRIPLHSPLIKSITVLQESFIKTGREKGRRVRRAKIYYLRDLDSNFYRVT 1249
IRGVVLG+ +G D+S+ L DV+ GE VER+I LHSP++K++ VL+E F+ G+ KG+RVRRAK+YYLRD RVT
Sbjct: 72 IRGVVLGRENRGMDTSIYLKDVLFGEHVERKIKLHSPMVKTLKVLEEGFVNRGKRKGKRVRRAKLYYLRDRKPEETRVT 150
BLAST of mRNA_P-wetherbeei_contig197.5.2 vs. uniprot
Match: D7FKS2_ECTSI (50S ribosomal protein l19-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKS2_ECTSI) HSP 1 Score: 91.7 bits (226), Expect = 2.420e-17 Identity = 45/83 (54.22%), Postives = 60/83 (72.29%), Query Frame = 2
Query: 1001 RAEVIRGVVLGQNRKGADSSVLLLDVIAGEGVERRIPLHSPLIKSITVLQESFIKTGREKGRRVRRAKIYYLRDLDSNFYRVT 1249
R +RGV+L + KG DSS+LL DVI G VE IPL SPLI+S+ V++ +FI G+ +G+RVR A+IYY+RDLD YR+T
Sbjct: 132 RTSQVRGVLLRKVNKGIDSSILLRDVINGNPVEHHIPLFSPLIQSVEVMETAFIYQGKLRGKRVRPARIYYIRDLDQKLYRIT 214
BLAST of mRNA_P-wetherbeei_contig197.5.2 vs. uniprot
Match: A0A8J9SNI4_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SNI4_PHATR) HSP 1 Score: 86.7 bits (213), Expect = 4.900e-17 Identity = 42/76 (55.26%), Postives = 60/76 (78.95%), Query Frame = 2
Query: 995 SDRAEVIRGVVLGQNRKGADSSVLLLDVIAGEGVERRIPLHSPLIKSITVLQESFIKTGREKGRRVRRAKIYYLRD 1222
SD ++IRGVV+G R+ D++VLL DV+ GE +ERR+PLHSPL++S+ VL+E+FI G+ K V+RAK+Y+LRD
Sbjct: 18 SDDTDLIRGVVIGITRRALDTTVLLRDVVFGEPIERRVPLHSPLLRSLKVLEENFIYKGKRK---VKRAKLYFLRD 90
BLAST of mRNA_P-wetherbeei_contig197.5.2 vs. uniprot
Match: A0A1Z5JBA1_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JBA1_FISSO) HSP 1 Score: 88.2 bits (217), Expect = 1.730e-16 Identity = 47/87 (54.02%), Postives = 63/87 (72.41%), Query Frame = 2
Query: 989 ATSDRAEVIRGVVLGQNRKGADSSVLLLDVIAGEGVERRIPLHSPLIKSITVLQESFIKTGREKGRRVRRAKIYYLRDLDSNFYRVT 1249
A + E IRGVVLG +RKG D SVLL DV+ G+ VERRI LHSPL++S+ +L+E+F+ G+ K V+RAK+Y+LRD + RVT
Sbjct: 101 AEKNEIEKIRGVVLGISRKGLDHSVLLRDVVFGQPVERRILLHSPLLQSVKLLEENFVYKGKRK---VKRAKLYFLRDRNPELTRVT 184
BLAST of mRNA_P-wetherbeei_contig197.5.2 vs. uniprot
Match: A0A7S3MA30_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MA30_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 5.310e-15 Identity = 46/91 (50.55%), Postives = 66/91 (72.53%), Query Frame = 2
Query: 980 LPWATSDRAEVIRGVVLGQNRKGA--DSSVLLLDVIAGEGVERRIPLHSPLIKSITVLQESFIKTGREKGRRVRRAKIYYLRDLDSNFYRV 1246
LP+ ++ +VI+GVV+G+ K D+S+LLL+V +G VERRIP++SPLIK I V+Q++FI G++ RVRR+K+YYL DL FY V
Sbjct: 74 LPYMSATVPDVIKGVVIGRFNKHMRMDASLLLLNVESGTKVERRIPIYSPLIKDIKVIQKAFIHKGKK---RVRRSKLYYLSDLHPKFYTV 161
BLAST of mRNA_P-wetherbeei_contig197.5.2 vs. uniprot
Match: A0A7S2ID41_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2ID41_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 1.190e-14 Identity = 39/70 (55.71%), Postives = 57/70 (81.43%), Query Frame = 2
Query: 1013 IRGVVLGQNRKGADSSVLLLDVIAGEGVERRIPLHSPLIKSITVLQESFIKTGREKGRRVRRAKIYYLRD 1222
IRGVVLG++ KG SSV + DV+ GE ++R++PLHSPL+KS+ VL+++F+ G++K V+RAK+YYLRD
Sbjct: 68 IRGVVLGKSNKGLGSSVQIRDVMYGEPIDRQVPLHSPLLKSLKVLEKNFVHKGKKK---VKRAKLYYLRD 134
BLAST of mRNA_P-wetherbeei_contig197.5.2 vs. uniprot
Match: A0A7S3PU14_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PU14_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 2.360e-14 Identity = 43/85 (50.59%), Postives = 60/85 (70.59%), Query Frame = 2
Query: 995 SDRAEVIRGVVLGQNRKGADSSVLLLDVIAGEGVERRIPLHSPLIKSITVLQESFIKTGREKGRRVRRAKIYYLRDLDSNFYRVT 1249
S+ E IRGVVLG +++G + L DV+ GE ++R+IPL+SPLIK I VL+E+F+ +K R+V+RAK+YYLRD RVT
Sbjct: 41 SNETEKIRGVVLGMDKRGLGTGFYLRDVVFGEPIDRKIPLYSPLIKDIKVLEENFVF---KKKRKVKRAKLYYLRDRLPQETRVT 122 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig197.5.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig197.5.2 >prot_P-wetherbeei_contig197.5.2 ID=prot_P-wetherbeei_contig197.5.2|Name=mRNA_P-wetherbeei_contig197.5.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=407bp MLAGVNRLLLRRAPGQRARQVLTAAEHQKPKVERLMHSQRRRESPGGPRAback to top mRNA from alignment at P-wetherbeei_contig197:5447..7883- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig197.5.2 ID=mRNA_P-wetherbeei_contig197.5.2|Name=mRNA_P-wetherbeei_contig197.5.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2437bp|location=Sequence derived from alignment at P-wetherbeei_contig197:5447..7883- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig197:5447..7883- >mRNA_P-wetherbeei_contig197.5.2 ID=mRNA_P-wetherbeei_contig197.5.2|Name=mRNA_P-wetherbeei_contig197.5.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1221bp|location=Sequence derived from alignment at P-wetherbeei_contig197:5447..7883- (Phaeothamnion wetherbeei SAG_119_79)back to top |