mRNA_P-wetherbeei_contig197.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig197.3.1
Unique NamemRNA_P-wetherbeei_contig197.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig197.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig197contigP-wetherbeei_contig197:1993..3908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size927
Hectar predicted targeting categoryother localisation
Exons5
Cds size747
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig197.3.1prot_P-wetherbeei_contig197.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig197 2171..3908 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186179.1289308-UTR-P-wetherbeei_contig197:1992..21701683186179.1289308-UTR-P-wetherbeei_contig197:1992..2170Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig197 1993..2170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186179.13681-CDS-P-wetherbeei_contig197:2170..23501683186179.13681-CDS-P-wetherbeei_contig197:2170..2350Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig197 2171..2350 +
1683186179.1442578-CDS-P-wetherbeei_contig197:2471..26051683186179.1442578-CDS-P-wetherbeei_contig197:2471..2605Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig197 2472..2605 +
1683186179.1518958-CDS-P-wetherbeei_contig197:2811..29891683186179.1518958-CDS-P-wetherbeei_contig197:2811..2989Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig197 2812..2989 +
1683186179.1590981-CDS-P-wetherbeei_contig197:3346..34601683186179.1590981-CDS-P-wetherbeei_contig197:3346..3460Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig197 3347..3460 +
1683186179.1687362-CDS-P-wetherbeei_contig197:3767..39081683186179.1687362-CDS-P-wetherbeei_contig197:3767..3908Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig197 3768..3908 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig197.3.1

>prot_P-wetherbeei_contig197.3.1 ID=prot_P-wetherbeei_contig197.3.1|Name=mRNA_P-wetherbeei_contig197.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=249bp
MASTMQVLDVLSKLREEVDRAGATESAQRDENRALTARGAALREAQQQSQ
VKMQQLINKEQALDDVAHGKQAALAEAKAHQAKLDALWRRRQSEESGHAK
LLDADLDAFIARGDAFRQQLARGLQRLRQQRARLATKEAERGEAETAAET
AARALQDSRDRAAKALEERNAERALIQEGLDEAAALESANTALESETFAI
EKAVREANESLAETKAAAAALVQRNRAMQGELRGLSRREARGRTQQRQQ
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mRNA from alignment at P-wetherbeei_contig197:1993..3908+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig197.3.1 ID=mRNA_P-wetherbeei_contig197.3.1|Name=mRNA_P-wetherbeei_contig197.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1916bp|location=Sequence derived from alignment at P-wetherbeei_contig197:1993..3908+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGAGGGGCAGGGGTGGGGGAGAGAAAGCTTGCGCTGCGGACATTTCGG
CGTTGGGCAGGGCGCACAGGTCGAACGAAGGGCCCGTCGCAAATGGAAGC
GTGGCGCCAGCTCGAGGCGCAAATCCCTTTCGAATTTTTGAAATTTAGAT
GTGCGTTTGAAGGAAAAGAAAAGACACAATGGCGTCGACGATGCAGGTGC
TTGATGTCCTCAGCAAACTGCGCGAGGAAGTAGACCGAGCAGGGGCCACG
GAGTCCGCTCAGAGGGACGAGAATCGCGCTCTCACGGCGCGTGGCGCAGC
TCTCCGGGAAGCCCAGCAGCAGAGCCAAGTCAAGATGCAGCAGCTAATCA
ACAAGGAGGTACGAAGACGGTGGCTTGTTGTTCCTGCGGAGCGTTTTGAC
CTTCGTTTCCTTGCACGGTTTGATTGAATCCCTTACCTCTTCCACAACTT
CTTTTCCCTCCGACTGCCTTGGCGCACAGCAAGCGCTGGACGACGTCGCA
CACGGCAAGCAGGCGGCACTGGCCGAGGCCAAGGCGCACCAGGCAAAGCT
GGACGCTCTGTGGCGGCGGCGACAGAGCGAGGAGAGCGGGCACGCCAAGC
TGCTGGACGCCGAGTGAGTCTCCCATGCCTCCAGTGTGTCTGTTTCGGGC
GTAGGATTGATAGCGACTGTTTTTAGAGTTCGGTCGCTTTTTCCCGTAGC
GTTCAATTTGGCGGGCTATCAATCAGCCTGCACACGGACAAGCACCTTCC
TCACCTATCAATAAACCTAAAGTTTAACGATGCGGGGCGAGCCTTTCCCT
TCCTTTCTGTTTCCGCCAGCCTCGACGCGTTCATCGCGCGCGGAGACGCC
TTCCGGCAGCAACTTGCCAGGGGCCTGCAGCGCCTACGGCAGCAGCGCGC
CCGGCTGGCGACCAAGGAGGCGGAGCGCGGCGAGGCGGAGACGGCGGCGG
AGACGGCGGCGCGGGCGCTCCAAGACAGCCGCGACCGCGCCGCCAAGGTG
GGCGCAGGGTACGGTGACGGACGCCGGGAGACGCTCGGTGGCGGCGTCGC
TCCGGGGGGGTGGGGGGGGATTCCATGGGGATGCTCGAAGAAAAGCCATT
CTCTTTCTTTCTTCATTAGTCTTCAGACTAGCGCTTTCGGCCGAACGGAA
GATGGGATCAGCAGACCTTCGCCTGCTGCGAGCCAACTCACTCGCCGCGG
CGTCCCCATCTTGTCTGCGTTACCGCCGCCCGCCGCCGCTGCTGCCGCCG
CTGCTGCTGCCACTGCCATTGCCGGCGGCGCTGCTGCCGCTGCCGCCATG
CCACCGCTGCCATCGCGGCGTCTTGACCCGTTCCTTCCCTTTCGGACCGA
CTAGGCGCTGGAGGAGAGGAACGCGGAGCGGGCGCTCATCCAGGAGGGTC
TGGACGAGGCGGCGGCGCTCGAGAGCGCCAACACCGCCCTCGAGTCGGAA
ACTTTCGCTATCGAGAAGGTGAGCGTGAGGTGAGCGCGACGGCTAGCTCG
CGTTCAATGCCCTCAATCCTTTTCTGGGCCGATCTATCCTTTTCTCCGCC
GGTCGATCGTTTTCTTCGGCCAATCTGAATCCTCTCTCTCTCTTGCTCTC
CGCCGGAAATGCGGTGGGGTCGCAACATTTTGGGGCCCCCATCCCTAGAC
CCTGGAAATTTGGGATGTACTATTCTTCCTTCCGATCGTGAACTCCATTG
CTGCCGTTCCTTCTTCTCTCATACTTCGCCACCGCCCGTGCCGCCGCCCG
GCATGCGCCGTCACCCGCGCTGCAGGCTGTGCGCGAGGCGAACGAATCGC
TGGCGGAGACCAAGGCGGCGGCGGCAGCGCTCGTACAGCGGAACCGCGCC
ATGCAGGGGGAGCTGCGGGGCCTCAGCCGCCGCGAGGCGCGGGGCCGCAC
GCAGCAGCGGCAGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig197:1993..3908+

>mRNA_P-wetherbeei_contig197.3.1 ID=mRNA_P-wetherbeei_contig197.3.1|Name=mRNA_P-wetherbeei_contig197.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=747bp|location=Sequence derived from alignment at P-wetherbeei_contig197:1993..3908+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTCGACGATGCAGGTGCTTGATGTCCTCAGCAAACTGCGCGAGGA
AGTAGACCGAGCAGGGGCCACGGAGTCCGCTCAGAGGGACGAGAATCGCG
CTCTCACGGCGCGTGGCGCAGCTCTCCGGGAAGCCCAGCAGCAGAGCCAA
GTCAAGATGCAGCAGCTAATCAACAAGGAGCAAGCGCTGGACGACGTCGC
ACACGGCAAGCAGGCGGCACTGGCCGAGGCCAAGGCGCACCAGGCAAAGC
TGGACGCTCTGTGGCGGCGGCGACAGAGCGAGGAGAGCGGGCACGCCAAG
CTGCTGGACGCCGACCTCGACGCGTTCATCGCGCGCGGAGACGCCTTCCG
GCAGCAACTTGCCAGGGGCCTGCAGCGCCTACGGCAGCAGCGCGCCCGGC
TGGCGACCAAGGAGGCGGAGCGCGGCGAGGCGGAGACGGCGGCGGAGACG
GCGGCGCGGGCGCTCCAAGACAGCCGCGACCGCGCCGCCAAGGCGCTGGA
GGAGAGGAACGCGGAGCGGGCGCTCATCCAGGAGGGTCTGGACGAGGCGG
CGGCGCTCGAGAGCGCCAACACCGCCCTCGAGTCGGAAACTTTCGCTATC
GAGAAGGCTGTGCGCGAGGCGAACGAATCGCTGGCGGAGACCAAGGCGGC
GGCGGCAGCGCTCGTACAGCGGAACCGCGCCATGCAGGGGGAGCTGCGGG
GCCTCAGCCGCCGCGAGGCGCGGGGCCGCACGCAGCAGCGGCAGCAG
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