mRNA_P-wetherbeei_contig19691.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19691.1.1
Unique NamemRNA_P-wetherbeei_contig19691.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19691.1.1 vs. uniprot
Match: A0A370WT10_9GAMM (Sulfotransferase family protein n=1 Tax=Dyella monticola TaxID=1927958 RepID=A0A370WT10_9GAMM)

HSP 1 Score: 56.6 bits (135), Expect = 6.220e-6
Identity = 30/80 (37.50%), Postives = 47/80 (58.75%), Query Frame = 1 
Query:   19 LARALEALSAGELDLTIRLCEEILAVDPKRVEALNLLGVATNMNGDPAAALGYFVQATDISPNDPLCWLNRGGTLRKLGR 258
            L  A++ALS G+ D   R    ++A+ PK  EA  LLG+++ M GDP  A   F QA  + P+DP+  ++ G +L + G+
Sbjct:   23 LDEAVKALSRGQPDAAERTLIGVMAMAPKSAEAHRLLGISSQMRGDPVKAADAFRQADTLRPDDPVILMSYGISLFECGK 102
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BLAST of mRNA_P-wetherbeei_contig19691.1.1 vs. uniprot
Match: A0A7V7E422_9PROT (Glycosyltransferase family protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A7V7E422_9PROT)

HSP 1 Score: 53.9 bits (128), Expect = 5.300e-5
Identity = 30/84 (35.71%), Postives = 44/84 (52.38%), Query Frame = 1 
Query:   28 ALEALSAGELDLTIRLCEEILAVDPKRVEALNLLGVATNMNGDPAAALGYFVQATDISPNDPLCWLNRGGTLRKLGRHIEAVDA 279
            A+E+   G L    R   ++LA +P+ V+AL+LLG+AT+  G PA       +A  +SP    C+ N G     LGR  +A  A
Sbjct:   13 AIESQQTGHLTTACRQYRQVLANNPRHVDALHLLGIATHRLGQPALGAKLICRAIRVSPKAATCFYNLGIVHSDLGRAEDACTA 96
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19691.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A370WT10_9GAMM6.220e-637.50Sulfotransferase family protein n=1 Tax=Dyella mon... [more]
A0A7V7E422_9PROT5.300e-535.71Glycosyltransferase family protein n=1 Tax=Rhodosp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19691contigP-wetherbeei_contig19691:522..1139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1279038.KB907338_gene935
PFAMsGlyco_transf_9,TPR_1,TPR_11,TPR_16,TPR_2,TPR_4,TPR_8
Model size618
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.74e-07
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1MUZK@1224|Proteobacteria,2TS0U@28211|Alphaproteobacteria,2JPRT@204441|Rhodospirillales
DescriptionTetratricopeptide repeat
Cds size618
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186179.0742607-CDS-P-wetherbeei_contig19691:521..11391683186179.0742607-CDS-P-wetherbeei_contig19691:521..1139Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19691 522..1139 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19691.1.1prot_P-wetherbeei_contig19691.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19691 522..1139 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19691.1.1

>prot_P-wetherbeei_contig19691.1.1 ID=prot_P-wetherbeei_contig19691.1.1|Name=mRNA_P-wetherbeei_contig19691.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=206bp
MINDVPLARALEALSAGELDLTIRLCEEILAVDPKRVEALNLLGVATNMN
GDPAAALGYFVQATDISPNDPLCWLNRGGTLRKLGRHIEAVDALDHAIDF
APGAAAVWVERGLCRMGMNDFTAAVDDFKKALAFAPDDNAARLNQAIALH
HAGRIDAAIAAFRDAVTRAPDDADLAFRLGLAYQDADRHELAAVEFERAI
RLAPGL
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mRNA from alignment at P-wetherbeei_contig19691:522..1139-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19691.1.1 ID=mRNA_P-wetherbeei_contig19691.1.1|Name=mRNA_P-wetherbeei_contig19691.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=618bp|location=Sequence derived from alignment at P-wetherbeei_contig19691:522..1139- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCAACGATGTGCCGCTCGCGCGTGCGCTGGAGGCTCTTTCCGCCGG
CGAACTCGATCTGACCATCCGCCTGTGCGAGGAAATTCTTGCCGTGGACC
CCAAGCGTGTCGAGGCGCTCAATCTCCTCGGAGTCGCCACTAACATGAAC
GGGGATCCGGCCGCGGCACTCGGGTACTTTGTTCAAGCCACCGATATCTC
ACCGAACGATCCGCTCTGCTGGCTCAACCGGGGCGGCACGCTGCGCAAAC
TCGGCCGTCATATCGAAGCCGTCGACGCACTAGATCATGCGATCGATTTC
GCACCAGGTGCGGCTGCGGTCTGGGTGGAACGTGGCCTTTGCCGGATGGG
CATGAATGATTTCACAGCAGCGGTGGACGATTTTAAAAAGGCACTCGCAT
TCGCGCCGGACGACAACGCCGCCCGGCTCAACCAAGCGATTGCCCTGCAT
CATGCGGGACGTATCGATGCGGCGATCGCAGCCTTTCGCGACGCGGTCAC
GCGTGCACCGGACGACGCCGACCTCGCGTTCCGGCTCGGCCTCGCCTATC
AGGATGCGGATCGCCACGAATTGGCGGCAGTCGAGTTCGAGCGTGCGATC
CGGCTCGCCCCCGGCCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19691:522..1139-

>mRNA_P-wetherbeei_contig19691.1.1 ID=mRNA_P-wetherbeei_contig19691.1.1|Name=mRNA_P-wetherbeei_contig19691.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=618bp|location=Sequence derived from alignment at P-wetherbeei_contig19691:522..1139- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCAACGATGTGCCGCTCGCGCGTGCGCTGGAGGCTCTTTCCGCCGG
CGAACTCGATCTGACCATCCGCCTGTGCGAGGAAATTCTTGCCGTGGACC
CCAAGCGTGTCGAGGCGCTCAATCTCCTCGGAGTCGCCACTAACATGAAC
GGGGATCCGGCCGCGGCACTCGGGTACTTTGTTCAAGCCACCGATATCTC
ACCGAACGATCCGCTCTGCTGGCTCAACCGGGGCGGCACGCTGCGCAAAC
TCGGCCGTCATATCGAAGCCGTCGACGCACTAGATCATGCGATCGATTTC
GCACCAGGTGCGGCTGCGGTCTGGGTGGAACGTGGCCTTTGCCGGATGGG
CATGAATGATTTCACAGCAGCGGTGGACGATTTTAAAAAGGCACTCGCAT
TCGCGCCGGACGACAACGCCGCCCGGCTCAACCAAGCGATTGCCCTGCAT
CATGCGGGACGTATCGATGCGGCGATCGCAGCCTTTCGCGACGCGGTCAC
GCGTGCACCGGACGACGCCGACCTCGCGTTCCGGCTCGGCCTCGCCTATC
AGGATGCGGATCGCCACGAATTGGCGGCAGTCGAGTTCGAGCGTGCGATC
CGGCTCGCCCCCGGCCTC
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