mRNA_P-wetherbeei_contig19659.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19659.1.1
Unique NamemRNA_P-wetherbeei_contig19659.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19659.1.1 vs. uniprot
Match: A0A522HEZ8_9BURK (Uncharacterized protein n=1 Tax=Candidimonas sp. TaxID=1912597 RepID=A0A522HEZ8_9BURK)

HSP 1 Score: 57.8 bits (138), Expect = 1.600e-8
Identity = 41/115 (35.65%), Postives = 60/115 (52.17%), Query Frame = 1 
Query:    1 MIDFDKVTNAPLFGVYARPVTYSPSNKLVKPAEPLLGIFDRAH--EIVLDEMANSELRQAGHSTTVPVLTVRLADFVTLPAQNDQLTIA--GEAFRVWSVQPDGEGCADLILRKV 333
            MID+D+    P   V+   VTY+P   +      ++G++D  +  ++VL++         G +TT P+L VRLA+F T PAQNDQ+ I      F V  V  D  G A L L +V
Sbjct:    1 MIDWDEHVLKPTADVFGESVTYTP---VAGAPLTIIGVYDEGYKQDVVLEDGV------VGVTTTKPLLGVRLAEFATPPAQNDQVFIPRINTTFIVSDVDADSHGWAKLKLNRV 106
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BLAST of mRNA_P-wetherbeei_contig19659.1.1 vs. uniprot
Match: UPI00193F0DED (hypothetical protein n=1 Tax=Sodalis sp. dw_23 TaxID=2697027 RepID=UPI00193F0DED)

HSP 1 Score: 52.0 bits (123), Expect = 2.890e-6
Identity = 39/111 (35.14%), Postives = 57/111 (51.35%), Query Frame = 1 
Query:    4 IDFDKVTNAPLFGVYARPVTYSPSNKLVKPAEPLLGIFDRAHEIVLDEMANSELRQAGHSTTVPVLTVRLADFVTLPAQNDQLTI--AGEAFRVWSVQPDGEGCADLILRK 330
            ID+D    APL  V+  PV Y P+      A  + GIFDRA+   ++ +   +      +TT+PVL VR A FV+ PA+ D+L +      F V  +Q D  G   L+L +
Sbjct:    3 IDWDINLLAPLQEVFGEPVNYRPAGSA---AYDITGIFDRAYTRDVEPLDPDD---PTINTTLPVLGVRDAVFVSPPARGDRLYVYRVDTVFVVKDIQLDSHGGCKLLLNR 107
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BLAST of mRNA_P-wetherbeei_contig19659.1.1 vs. uniprot
Match: UPI0012BD3E8A (hypothetical protein n=1 Tax=Sansalvadorimonas verongulae TaxID=2172824 RepID=UPI0012BD3E8A)

HSP 1 Score: 48.9 bits (115), Expect = 3.690e-5
Identity = 22/50 (44.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:  181 STTVPVLTVRLADFVTLPAQNDQLTIAGEAFRVWSVQPDGEGCADLILRK 330
            ++T P + V L+DF T P Q+D + I G  + V  V+PDGEG A+L+L++
Sbjct:   50 ASTDPKIAVSLSDFTTAPDQDDPVVIRGLRYLVDEVRPDGEGMAELMLKR 99
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19659.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A522HEZ8_9BURK1.600e-835.65Uncharacterized protein n=1 Tax=Candidimonas sp. T... [more]
UPI00193F0DED2.890e-635.14hypothetical protein n=1 Tax=Sodalis sp. dw_23 Tax... [more]
UPI0012BD3E8A3.690e-544.00hypothetical protein n=1 Tax=Sansalvadorimonas ver... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19659contigP-wetherbeei_contig19659:418..753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog391038.Bphy_1881
Model size336
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.09e-08
EggNOG OGs2DK90@1|root,32UEN@2|Bacteria,1N2TH@1224|Proteobacteria,2W510@28216|Betaproteobacteria,1KBG1@119060|Burkholderiaceae
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186178.2727358-CDS-P-wetherbeei_contig19659:417..7531683186178.2727358-CDS-P-wetherbeei_contig19659:417..753Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19659 418..753 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19659.1.1prot_P-wetherbeei_contig19659.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19659 418..753 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19659.1.1

>prot_P-wetherbeei_contig19659.1.1 ID=prot_P-wetherbeei_contig19659.1.1|Name=mRNA_P-wetherbeei_contig19659.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp
MIDFDKVTNAPLFGVYARPVTYSPSNKLVKPAEPLLGIFDRAHEIVLDEM
ANSELRQAGHSTTVPVLTVRLADFVTLPAQNDQLTIAGEAFRVWSVQPDG
EGCADLILRKV*
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mRNA from alignment at P-wetherbeei_contig19659:418..753-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19659.1.1 ID=mRNA_P-wetherbeei_contig19659.1.1|Name=mRNA_P-wetherbeei_contig19659.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig19659:418..753- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCGACTTCGACAAGGTGACCAACGCGCCGCTGTTCGGCGTCTACGC
GCGGCCGGTCACCTACAGCCCGTCGAACAAGCTGGTCAAGCCGGCCGAGC
CGCTGCTGGGCATCTTCGACCGCGCGCACGAGATCGTGCTCGACGAGATG
GCCAATTCGGAGCTGCGGCAGGCCGGCCATTCGACCACGGTGCCCGTGCT
GACGGTACGCCTGGCCGACTTCGTGACGCTGCCGGCGCAAAACGACCAGC
TTACGATCGCGGGCGAGGCGTTTCGCGTCTGGTCGGTGCAGCCGGACGGC
GAAGGCTGCGCCGATCTGATCCTGCGAAAGGTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19659:418..753-

>mRNA_P-wetherbeei_contig19659.1.1 ID=mRNA_P-wetherbeei_contig19659.1.1|Name=mRNA_P-wetherbeei_contig19659.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig19659:418..753- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCGACTTCGACAAGGTGACCAACGCGCCGCTGTTCGGCGTCTACGC
GCGGCCGGTCACCTACAGCCCGTCGAACAAGCTGGTCAAGCCGGCCGAGC
CGCTGCTGGGCATCTTCGACCGCGCGCACGAGATCGTGCTCGACGAGATG
GCCAATTCGGAGCTGCGGCAGGCCGGCCATTCGACCACGGTGCCCGTGCT
GACGGTACGCCTGGCCGACTTCGTGACGCTGCCGGCGCAAAACGACCAGC
TTACGATCGCGGGCGAGGCGTTTCGCGTCTGGTCGGTGCAGCCGGACGGC
GAAGGCTGCGCCGATCTGATCCTGCGAAAGGTCTGA
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