mRNA_P-wetherbeei_contig19618.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19618.2.1
Unique NamemRNA_P-wetherbeei_contig19618.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19618.2.1 vs. uniprot
Match: A0A7C4TRH6_9HYPH (50S ribosomal protein L32 n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TRH6_9HYPH)

HSP 1 Score: 97.4 bits (241), Expect = 1.810e-25
Identity = 46/61 (75.41%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 MAVPRKKVSRMKRGFRRSADALKASVYVEDSKTGERRRPHHLYPKTGMYNGRQILEPKADA 183
            MAVP+KKVSRMKRGFRRSADALKA  YVED  +GERRRPHH+  KTG Y GRQ+LEPK++ 
Sbjct:    1 MAVPKKKVSRMKRGFRRSADALKAPTYVEDKDSGERRRPHHIDLKTGRYRGRQVLEPKSET 61
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BLAST of mRNA_P-wetherbeei_contig19618.2.1 vs. uniprot
Match: A0A0P6VSK7_9HYPH (50S ribosomal protein L32 n=1 Tax=Prosthecomicrobium hirschii TaxID=665126 RepID=A0A0P6VSK7_9HYPH)

HSP 1 Score: 95.9 bits (237), Expect = 7.390e-25
Identity = 45/61 (73.77%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 MAVPRKKVSRMKRGFRRSADALKASVYVEDSKTGERRRPHHLYPKTGMYNGRQILEPKADA 183
            MAVP++K SRMKRGFRRSADALKA  Y ED  +GE RRPHH+  KTGMY G+Q+LEPKADA
Sbjct:    1 MAVPKRKTSRMKRGFRRSADALKAPTYTEDKDSGELRRPHHIDLKTGMYRGKQVLEPKADA 61
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BLAST of mRNA_P-wetherbeei_contig19618.2.1 vs. uniprot
Match: A0A2W4TUM1_9PROT (50S ribosomal protein L32 n=2 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4TUM1_9PROT)

HSP 1 Score: 95.1 bits (235), Expect = 1.490e-24
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 MAVPRKKVSRMKRGFRRSADALKASVYVEDSKTGERRRPHHLYPKTGMYNGRQILEPKADA 183
            MAVPRKKVS MKRGFRRSADALK  V+VED +TGERRRPHH+  KTG Y GRQILEPK + 
Sbjct:    1 MAVPRKKVSPMKRGFRRSADALKPPVHVEDKETGERRRPHHIDLKTGKYRGRQILEPKNEV 61
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BLAST of mRNA_P-wetherbeei_contig19618.2.1 vs. uniprot
Match: A0A537RYN7_9PROT (50S ribosomal protein L32 n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A537RYN7_9PROT)

HSP 1 Score: 94.4 bits (233), Expect = 3.010e-24
Identity = 46/61 (75.41%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 MAVPRKKVSRMKRGFRRSADALKASVYVEDSKTGERRRPHHLYPKTGMYNGRQILEPKADA 183
            MAVPRKK SRMKRG RRSADAL A +YVED ++GERRRPHH+  K+G Y GRQILEPKAD 
Sbjct:    1 MAVPRKKTSRMKRGTRRSADALTAPLYVEDKESGERRRPHHIDLKSGKYRGRQILEPKADV 61
[Close]
BLAST of mRNA_P-wetherbeei_contig19618.2.1 vs. uniprot
Match: A0A0L0IWP3_9HYPH (50S ribosomal protein L32 n=16 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A0L0IWP3_9HYPH)

HSP 1 Score: 94.0 bits (232), Expect = 4.280e-24
Identity = 45/61 (73.77%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:    1 MAVPRKKVSRMKRGFRRSADALKASVYVEDSKTGERRRPHHLYPKTGMYNGRQILEPKADA 183
            MAVP++K SRMKRGFRRSADALK   YVED  +GE RRPHH+  KTGMY GRQIL+PKAD 
Sbjct:    1 MAVPKRKTSRMKRGFRRSADALKQPTYVEDKDSGELRRPHHVDLKTGMYRGRQILQPKADV 61
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BLAST of mRNA_P-wetherbeei_contig19618.2.1 vs. uniprot
Match: A0A6I3KNG3_9HYPH (50S ribosomal protein L32 n=1 Tax=Hyphomicrobium album TaxID=2665159 RepID=A0A6I3KNG3_9HYPH)

HSP 1 Score: 93.2 bits (230), Expect = 8.650e-24
Identity = 46/61 (75.41%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 MAVPRKKVSRMKRGFRRSADALKASVYVEDSKTGERRRPHHLYPKTGMYNGRQILEPKADA 183
            MAVPRKKVSRMKRG RRS DAL    Y+ED  +GERRRPHH+  KTG Y GRQILEPKADA
Sbjct:    1 MAVPRKKVSRMKRGMRRSHDALGNPTYIEDKDSGERRRPHHIDLKTGKYRGRQILEPKADA 61
[Close]
BLAST of mRNA_P-wetherbeei_contig19618.2.1 vs. uniprot
Match: A0A2N6AVJ6_9HYPH (50S ribosomal protein L32 n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2N6AVJ6_9HYPH)

HSP 1 Score: 92.0 bits (227), Expect = 2.480e-23
Identity = 43/60 (71.67%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    1 MAVPRKKVSRMKRGFRRSADALKASVYVEDSKTGERRRPHHLYPKTGMYNGRQILEPKAD 180
            MAVP+ K++RMKRGFRRS DALK +VYVED ++GE RRPHH+  K+G YNGRQILEPK D
Sbjct:    1 MAVPKSKITRMKRGFRRSHDALKQAVYVEDKESGELRRPHHIDLKSGKYNGRQILEPKGD 60
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BLAST of mRNA_P-wetherbeei_contig19618.2.1 vs. uniprot
Match: UPI0019C467EB (50S ribosomal protein L32 n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=UPI0019C467EB)

HSP 1 Score: 92.0 bits (227), Expect = 2.480e-23
Identity = 46/61 (75.41%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 MAVPRKKVSRMKRGFRRSADALKASVYVEDSKTGERRRPHHLYPKTGMYNGRQILEPKADA 183
            MAVPRKKVSRMK+G RRS DAL A  YVED  +GERRRPHH+  KTG Y GRQILEPKAD 
Sbjct:    1 MAVPRKKVSRMKQGTRRSHDALVAPAYVEDKDSGERRRPHHIDLKTGKYRGRQILEPKADV 61
[Close]
BLAST of mRNA_P-wetherbeei_contig19618.2.1 vs. uniprot
Match: A0A7C2R3L2_9HYPH (50S ribosomal protein L32 n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2R3L2_9HYPH)

HSP 1 Score: 91.7 bits (226), Expect = 3.530e-23
Identity = 45/61 (73.77%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:    1 MAVPRKKVSRMKRGFRRSADALKASVYVEDSKTGERRRPHHLYPKTGMYNGRQILEPKADA 183
            MAVPRKKVSRMKRG RRSADAL A VYVED  +GERRRPHH+  K+G Y GRQ+L PKA+ 
Sbjct:    1 MAVPRKKVSRMKRGNRRSADALAAPVYVEDKDSGERRRPHHIDLKSGRYRGRQVLPPKAEV 61
[Close]
BLAST of mRNA_P-wetherbeei_contig19618.2.1 vs. uniprot
Match: A0A849TTD7_9HYPH (50S ribosomal protein L32 n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A849TTD7_9HYPH)

HSP 1 Score: 91.3 bits (225), Expect = 5.010e-23
Identity = 45/61 (73.77%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 MAVPRKKVSRMKRGFRRSADALKASVYVEDSKTGERRRPHHLYPKTGMYNGRQILEPKADA 183
            MAVPR K SRMKRGFRRSADALKA  Y ED  +GE RRPHH+  K+G Y GRQILEPKAD 
Sbjct:    1 MAVPRGKTSRMKRGFRRSADALKAPTYTEDKDSGELRRPHHVDLKSGKYRGRQILEPKADV 61
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19618.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4TRH6_9HYPH1.810e-2575.4150S ribosomal protein L32 n=1 Tax=Hyphomicrobiales... [more]
A0A0P6VSK7_9HYPH7.390e-2573.7750S ribosomal protein L32 n=1 Tax=Prosthecomicrobi... [more]
A0A2W4TUM1_9PROT1.490e-2477.0550S ribosomal protein L32 n=2 Tax=Proteobacteria b... [more]
A0A537RYN7_9PROT3.010e-2475.4150S ribosomal protein L32 n=2 Tax=Alphaproteobacte... [more]
A0A0L0IWP3_9HYPH4.280e-2473.7750S ribosomal protein L32 n=16 Tax=Alphaproteobact... [more]
A0A6I3KNG3_9HYPH8.650e-2475.4150S ribosomal protein L32 n=1 Tax=Hyphomicrobium a... [more]
A0A2N6AVJ6_9HYPH2.480e-2371.6750S ribosomal protein L32 n=1 Tax=Hyphomicrobiales... [more]
UPI0019C467EB2.480e-2375.4150S ribosomal protein L32 n=2 Tax=unclassified Hyp... [more]
A0A7C2R3L2_9HYPH3.530e-2373.7750S ribosomal protein L32 n=1 Tax=Hyphomicrobiales... [more]
A0A849TTD7_9HYPH5.010e-2373.7750S ribosomal protein L32 n=1 Tax=Hyphomicrobiacea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19618contigP-wetherbeei_contig19618:1074..1262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1101190.ARWB01000001_gene3444
PFAMsRibosomal_L32p
Model size189
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02911
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.01e-24
EggNOG OGsCOG0333@1|root,COG0333@2|Bacteria,1PU42@1224|Proteobacteria,2V5AG@28211|Alphaproteobacteria,36YVN@31993|Methylocystaceae
DescriptionRibosomal L32p protein family
Cds size189
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186177.4459774-CDS-P-wetherbeei_contig19618:1073..12621683186177.4459774-CDS-P-wetherbeei_contig19618:1073..1262Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19618 1074..1262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19618.2.1prot_P-wetherbeei_contig19618.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19618 1074..1262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19618.2.1

>prot_P-wetherbeei_contig19618.2.1 ID=prot_P-wetherbeei_contig19618.2.1|Name=mRNA_P-wetherbeei_contig19618.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=63bp
MAVPRKKVSRMKRGFRRSADALKASVYVEDSKTGERRRPHHLYPKTGMYN
GRQILEPKADAY*
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mRNA from alignment at P-wetherbeei_contig19618:1074..1262+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19618.2.1 ID=mRNA_P-wetherbeei_contig19618.2.1|Name=mRNA_P-wetherbeei_contig19618.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig19618:1074..1262+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGTACCCAGGAAAAAAGTTTCCCGCATGAAGCGCGGCTTCCGCCG
TTCCGCGGACGCATTGAAGGCTTCAGTCTACGTCGAGGACAGCAAGACCG
GCGAGCGTCGCCGGCCGCATCACCTCTATCCCAAGACCGGCATGTACAAT
GGCCGCCAGATTCTGGAACCGAAGGCCGACGCGTATTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19618:1074..1262+

>mRNA_P-wetherbeei_contig19618.2.1 ID=mRNA_P-wetherbeei_contig19618.2.1|Name=mRNA_P-wetherbeei_contig19618.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig19618:1074..1262+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGTACCCAGGAAAAAAGTTTCCCGCATGAAGCGCGGCTTCCGCCG
TTCCGCGGACGCATTGAAGGCTTCAGTCTACGTCGAGGACAGCAAGACCG
GCGAGCGTCGCCGGCCGCATCACCTCTATCCCAAGACCGGCATGTACAAT
GGCCGCCAGATTCTGGAACCGAAGGCCGACGCGTATTAA
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