mRNA_P-wetherbeei_contig19617.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig19617.1.1 vs. uniprot
Match: A0A835YL62_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL62_9STRA) HSP 1 Score: 192 bits (488), Expect = 8.990e-51 Identity = 128/303 (42.24%), Postives = 167/303 (55.12%), Query Frame = 1
Query: 1 THGTFEALSPVDPQSLAQLRSMGFSEGMCLQALRRGGSVEDAVNWLFQQSTSGGSGDTNGXXXXXXXXXXXASTARGRAPDAVTPVSGLPFVLCSAEEASLLHAAAGRLVNEAELVAAASTAVARLGTGAADRSGGSXXXXXXXTVTAVSGVIGDAGPNLLLRAFRSPIFQSVLNVTAMRPEFLPDLIRHSLPREWTAAAVGGDGDGGVGARIAVLWTPGRGGHPDAAWFRKFWAYLSRRCPHALAFFAESWPVVPTNEGVVCSLSVRAAVVASELLDDNVRHLLVALGGRTLMGGLFQAEAG 909
++G F+ + + A LR+MGF+EG CL+A +++DAVNWL + + A A RA +V P++L S EE +LL A RL++EA L ++ + G XXXXXX G G A LL R FRS FQ+ LNV ++R +FLPDL+ SLPR W +GG GA ++ WTP +GGHP A WFR W Y +RRCP A+ FAESWPVVPTNEG VC LS+R+AVV+++ LD VR LL G TL+ GLF AEAG
Sbjct: 631 SYGCFQTVGALHKDHAA-LRAMGFTEGQCLRAFTHCDTLQDAVNWLMADDNAEAA----------------AVAAPQRASTSVA-AGAEPYLLASGEEVALLTGAGSRLISEAAL---------------SESAAGGRXXXXXXXXXXARGAEGHA---LLRRVFRSAAFQATLNVASLRADFLPDLVALSLPRAWR--------EGGEGA-VSWPWTPAQGGHPGADWFRALWRYFARRCPDAVGAFAESWPVVPTNEGRVCRLSLRSAVVSADGLDAGVRALLRRAGALTLLAGLFDAEAG 888
BLAST of mRNA_P-wetherbeei_contig19617.1.1 vs. uniprot
Match: D8LJG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG5_ECTSI) HSP 1 Score: 143 bits (361), Expect = 5.590e-34 Identity = 78/164 (47.56%), Postives = 100/164 (60.98%), Query Frame = 1
Query: 433 TVTAVSGVIGDAGPN--LLLRAFRSPIFQSVLNVTAMRPEFLPDLIRHSLPREWTAAAVGGDGDGGVGARIAVLWTPGRGGHPDAAWFRKFWAYLSRRCPHALAFFAESWPVVPTNEGVVCSLSVRAAVVASELLDDNVRHLLVALGGRTLMGGLFQAEAGPAA 918
T A +G + AG + +LRA RSP QS L+VT MR + LPDLI +LP EW A G G G+ A WTPG+ GHPD WFR+ W YL+ P A+ AES+PVVPT VVC LS+R+AV+ + L +VR++LV G RTL+ G+F G AA
Sbjct: 83 TAGAAAGRVRTAGEDDGRVLRALRSPALQSALHVTTMRDDLLPDLIGQTLPPEWRGAGAAGGG----GSSTAFPWTPGKSGHPDVDWFRRLWGYLASSRPTAVRLLAESYPVVPTGNSVVCPLSLRSAVIDGDRLGKDVRNILVGAGCRTLLPGVFARGVGDAA 242
BLAST of mRNA_P-wetherbeei_contig19617.1.1 vs. uniprot
Match: A0A6H5K4B9_9PHAE (UBA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4B9_9PHAE) HSP 1 Score: 140 bits (352), Expect = 7.190e-33 Identity = 75/147 (51.02%), Postives = 92/147 (62.59%), Query Frame = 1
Query: 481 LLRAFRSPIFQSVLNVTAMRPEFLPDLIRHSLPREWTAA-AVGGDGDGGVGARIAVLWTPGRGGHPDAAWFRKFWAYLSRRCPHALAFFAESWPVVPTNEGVVCSLSVRAAVVASELLDDNVRHLLVALGGRTLMGGLFQAEAGPAA 918
+LRA RSP QS LNVT MR + LPDLI +LP EW A A GGD + A WTPG+ GHPD WFR+ W YL+ P A+ AES+PVVPT VVC LS+R+AV+ L +VR++LV G RTL+ G+F G AA
Sbjct: 468 VLRALRSPALQSALNVTTMRDDLLPDLIGQTLPPEWRGAVAAGGDS-----SSTAFPWTPGKSGHPDVDWFRRLWGYLASSRPTAVRLLAESYPVVPTGNSVVCPLSLRSAVIDGGRLSKDVRNILVGAGCRTLLPGVFARGVGDAA 609
BLAST of mRNA_P-wetherbeei_contig19617.1.1 vs. uniprot
Match: A0A7S2UBA9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UBA9_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 8.460e-9 Identity = 43/148 (29.05%), Postives = 70/148 (47.30%), Query Frame = 1
Query: 478 LLLRAFRSPIFQSVLNVTAMRPEFLPDLIRHSLPREWTAAAVGGDGDGGVGARIAVLWTPGR----GGHPDAAWFRKFWAYL--SRRCPHALAFFAESWPVVPTNEGVVCSLSVRAAVVASELLDDNVRHLLVALGGRTLMGGLFQAE 903
++ + F S ++LNV + + L D++ +P +W G D + W P P WF++ W Y+ S +L AE + +VPT EGVVCSLS ++V+ + L V+ +V+LGGRT G+ +
Sbjct: 210 IVRKFFSSEEVATLLNVVPLVSDMLADVVSRVIPADWK----GSD---------SAPWNPSSCDSDASIPSQEWFKRLWRYICSSSGGGDSLGLIAEQFCIVPTQEGVVCSLSPGSSVMDASKLSHQVKEAVVSLGGRTFCEGVLPTD 344
BLAST of mRNA_P-wetherbeei_contig19617.1.1 vs. uniprot
Match: A0A1V9ZU53_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZU53_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 6.190e-8 Identity = 45/140 (32.14%), Postives = 60/140 (42.86%), Query Frame = 1
Query: 502 PIFQSV---LNVTAMRPEFLPDLIRHSLPREWTAAAVGGDGDGGVGARIAVLWTPGRGGHPDAAWFRKFWAYLSRRCPHALAFFAESWPVVPTNEGVVCSLSVRAAVVASELLDDNVRHLLVALGGRTLMGGLFQAEAGP 912
P+ S+ LNV M L D + LP W A V W P AWF+ WAY+ P L E+WP+VPT GV CSL R+A++ L ++ +L+ +G L LF AE P
Sbjct: 655 PVLHSIATSLNVQQMSVHDLSDFLPLVLPAHWARQA-------------RVEWALDTTDVPTFAWFQDLWAYIGNT-PAVLDELQETWPLVPTQNGVACSLRRRSAILHPAWLAPSIVAILLRVGVDMLASDLFVAEVAP 780
BLAST of mRNA_P-wetherbeei_contig19617.1.1 vs. uniprot
Match: A0A835YPX6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPX6_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 5.060e-7 Identity = 38/93 (40.86%), Postives = 51/93 (54.84%), Query Frame = 1
Query: 541 PEFLPDLIRHSLPREWTAAAVGGDGDGGVGARIAVLWTPGRGGHPDAAWFRKFWAYLSRRCPHALAFFAESWPVVPTNEGVVCSLSVRAAVVA 819
PE L+R++ R GDG AR+ L + G D A W YLS+RCP A+ FFAE+WP+VPT+E VC LS+R+ +A
Sbjct: 398 PEMRATLLRNACER----------GDGA--ARVQSLLSKGAVWPNDLA--ELLWRYLSKRCPKAVNFFAEAWPIVPTDERRVCRLSLRSPTLA 476
BLAST of mRNA_P-wetherbeei_contig19617.1.1 vs. uniprot
Match: A0A1W0A4K0_9STRA (UBA domain-containing protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A4K0_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 2.300e-5 Identity = 33/112 (29.46%), Postives = 51/112 (45.54%), Query Frame = 1
Query: 523 NVTAMRPEFLPDLIRHSLPREWTAAAVGGDGDGGVGARIAVLWTPGRGGHPDAAWFRKFWAYLSRRCPHALAFFAESWPVVPTNEGVVCSLSVRAAVVASELLDDNVRHLLV 858
N+ M L D + +LP W+ + V W+P P WF+ WAY+ P AL ESWP+VPT GVVC+L ++++ + L + +L+
Sbjct: 665 NIQQMSVADLRDFLPVALPGTWSG-------------QTRVNWSPESTDLPTFQWFQDLWAYIGSS-PKALEDLEESWPIVPTQSGVVCTLRRHSSILHTAWLAPTLIDILL 762
BLAST of mRNA_P-wetherbeei_contig19617.1.1 vs. uniprot
Match: A0A067CGM9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CGM9_SAPPC) HSP 1 Score: 56.6 bits (135), Expect = 5.590e-5 Identity = 35/128 (27.34%), Postives = 55/128 (42.97%), Query Frame = 1
Query: 520 LNVTAMRPEFLPDLIRHSLPREWTAAAVGGDGDGGVGARIAVLWTPGRGGHPDAAWFRKFWAYLSRRCPHALAFFAESWPVVPTNEGVVCSLSVRAAVVASELLDDNVRHLLVALGGRTLMGGLFQAE 903
+NV M + L D LP W + V W+ P AWF+ WAY+ P L + WP+VPT G VCSL +++++ + L ++ +L+ + L LF+ E
Sbjct: 655 VNVQVMGVQDLGDFFPLVLPPHWARQS-------------RVAWSIDATDLPTLAWFQDLWAYIGNS-PSTLLDLCDQWPIVPTQNGAVCSLRKQSSILHTAWLAPSIVAILLRMQVDVLAHDLFRTE 768 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19617.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig19617.1.1 >prot_P-wetherbeei_contig19617.1.1 ID=prot_P-wetherbeei_contig19617.1.1|Name=mRNA_P-wetherbeei_contig19617.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=354bp THGTFEALSPVDPQSLAQLRSMGFSEGMCLQALRRGGSVEDAVNWLFQQSback to top mRNA from alignment at P-wetherbeei_contig19617:128..1191+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig19617.1.1 ID=mRNA_P-wetherbeei_contig19617.1.1|Name=mRNA_P-wetherbeei_contig19617.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1064bp|location=Sequence derived from alignment at P-wetherbeei_contig19617:128..1191+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig19617:128..1191+ >mRNA_P-wetherbeei_contig19617.1.1 ID=mRNA_P-wetherbeei_contig19617.1.1|Name=mRNA_P-wetherbeei_contig19617.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1062bp|location=Sequence derived from alignment at P-wetherbeei_contig19617:128..1191+ (Phaeothamnion wetherbeei SAG_119_79)back to top |