mRNA_P-wetherbeei_contig196.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig196.5.1
Unique NamemRNA_P-wetherbeei_contig196.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig196.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig196contigP-wetherbeei_contig196:10471..11563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1093
Hectar predicted targeting categoryother localisation
Exons1
Cds size921
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186177.026652-UTR-P-wetherbeei_contig196:10470..106421683186177.026652-UTR-P-wetherbeei_contig196:10470..10642Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig196 10471..10642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186177.0372372-CDS-P-wetherbeei_contig196:10642..115631683186177.0372372-CDS-P-wetherbeei_contig196:10642..11563Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig196 10643..11563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig196.5.1prot_P-wetherbeei_contig196.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig196 10643..11563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig196.5.1

>prot_P-wetherbeei_contig196.5.1 ID=prot_P-wetherbeei_contig196.5.1|Name=mRNA_P-wetherbeei_contig196.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=307bp
MSFATPTRETAAHFGAPRAAQHVAQHAASSNAQGAALLNMLRSVADGGAA
AASSRPAVGGPAHARAESAASRQELYLRNVLLSAGGGAPLGRGTEAGAAT
TTAEPAGTSPAPAEAAAGGQASNPTVSVAGDGNLVSSGAGAGADGNLAGC
VPAAAGRRKKRNSCKSEIPCVTIPAAPQMAASQAAATAAAASGSRSGKEK
RSSSVTNTPVASRSATPNGRSVTPAGSRASTPSSANRRGDRRERSDGGGS
GGSSGGSAVKRPQQVVVPPPTAFAWSAFQNSPDPKSLPMPEFVDDSFHQL
PQPVLGV
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mRNA from alignment at P-wetherbeei_contig196:10471..11563+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig196.5.1 ID=mRNA_P-wetherbeei_contig196.5.1|Name=mRNA_P-wetherbeei_contig196.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1093bp|location=Sequence derived from alignment at P-wetherbeei_contig196:10471..11563+ (Phaeothamnion wetherbeei SAG_119_79)
TCGCAAGGAAGGGAACTTTGGGGGCAAATACCCACATCGGCAAAGGCAGC
TGCAAGTCAGGAGGGTTTAGTGCTTGTTGACGAAGCGGAGAAGGCTGTTG
GTGGCGGCTTCCGAGGGAATTCTTTCTAAAAGGGTCCGTTCCATTCAACT
TCGTCGAACGGAGACCTCTCGTATGAGTTTTGCGACGCCGACAAGAGAGA
CCGCAGCTCACTTTGGTGCGCCGCGTGCTGCCCAGCATGTTGCCCAGCAT
GCGGCGTCCTCGAATGCTCAGGGCGCAGCGTTGCTTAATATGCTTCGCAG
CGTTGCCGACGGGGGCGCTGCGGCAGCGTCGTCACGGCCTGCCGTTGGCG
GACCTGCACATGCCAGAGCGGAGTCAGCAGCATCTCGACAAGAACTGTAT
CTCAGGAACGTATTACTTTCCGCCGGCGGAGGCGCACCTTTGGGAAGAGG
GACGGAGGCAGGTGCAGCAACAACGACGGCCGAACCGGCAGGGACCTCTC
CGGCTCCCGCTGAAGCGGCAGCCGGAGGACAAGCATCAAACCCGACTGTC
AGCGTCGCAGGGGACGGAAACCTGGTATCAAGCGGCGCCGGCGCCGGCGC
CGACGGCAACCTGGCCGGATGCGTGCCGGCCGCGGCAGGCCGCCGCAAGA
AACGAAATTCATGCAAGAGCGAAATTCCCTGCGTCACGATACCCGCGGCG
CCGCAGATGGCGGCGTCGCAGGCTGCGGCGACGGCGGCCGCTGCGTCCGG
CAGCCGTTCCGGCAAGGAGAAGCGATCCAGCAGCGTTACCAACACGCCCG
TGGCGAGCCGCTCGGCCACCCCGAACGGTCGGTCGGTGACACCGGCGGGC
AGCCGCGCATCCACCCCCAGCTCCGCCAACCGACGCGGCGATCGACGGGA
ACGCAGCGACGGCGGCGGCAGCGGTGGCAGCAGCGGCGGCTCCGCCGTGA
AGCGGCCGCAGCAGGTCGTGGTGCCGCCGCCGACCGCCTTCGCGTGGTCG
GCGTTCCAGAACTCGCCGGACCCCAAGTCGCTCCCCATGCCCGAATTCGT
CGACGACTCATTCCACCAGCTGCCACAGCCGGTGCTCGGCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig196:10471..11563+

>mRNA_P-wetherbeei_contig196.5.1 ID=mRNA_P-wetherbeei_contig196.5.1|Name=mRNA_P-wetherbeei_contig196.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=921bp|location=Sequence derived from alignment at P-wetherbeei_contig196:10471..11563+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTTTTGCGACGCCGACAAGAGAGACCGCAGCTCACTTTGGTGCGCC
GCGTGCTGCCCAGCATGTTGCCCAGCATGCGGCGTCCTCGAATGCTCAGG
GCGCAGCGTTGCTTAATATGCTTCGCAGCGTTGCCGACGGGGGCGCTGCG
GCAGCGTCGTCACGGCCTGCCGTTGGCGGACCTGCACATGCCAGAGCGGA
GTCAGCAGCATCTCGACAAGAACTGTATCTCAGGAACGTATTACTTTCCG
CCGGCGGAGGCGCACCTTTGGGAAGAGGGACGGAGGCAGGTGCAGCAACA
ACGACGGCCGAACCGGCAGGGACCTCTCCGGCTCCCGCTGAAGCGGCAGC
CGGAGGACAAGCATCAAACCCGACTGTCAGCGTCGCAGGGGACGGAAACC
TGGTATCAAGCGGCGCCGGCGCCGGCGCCGACGGCAACCTGGCCGGATGC
GTGCCGGCCGCGGCAGGCCGCCGCAAGAAACGAAATTCATGCAAGAGCGA
AATTCCCTGCGTCACGATACCCGCGGCGCCGCAGATGGCGGCGTCGCAGG
CTGCGGCGACGGCGGCCGCTGCGTCCGGCAGCCGTTCCGGCAAGGAGAAG
CGATCCAGCAGCGTTACCAACACGCCCGTGGCGAGCCGCTCGGCCACCCC
GAACGGTCGGTCGGTGACACCGGCGGGCAGCCGCGCATCCACCCCCAGCT
CCGCCAACCGACGCGGCGATCGACGGGAACGCAGCGACGGCGGCGGCAGC
GGTGGCAGCAGCGGCGGCTCCGCCGTGAAGCGGCCGCAGCAGGTCGTGGT
GCCGCCGCCGACCGCCTTCGCGTGGTCGGCGTTCCAGAACTCGCCGGACC
CCAAGTCGCTCCCCATGCCCGAATTCGTCGACGACTCATTCCACCAGCTG
CCACAGCCGGTGCTCGGCGTC
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