mRNA_P-wetherbeei_contig19596.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19596.1.1
Unique NamemRNA_P-wetherbeei_contig19596.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19596.1.1 vs. uniprot
Match: UPI0012DEB2D9 (hypothetical protein n=1 Tax=Chitinilyticum aquatile TaxID=362520 RepID=UPI0012DEB2D9)

HSP 1 Score: 55.1 bits (131), Expect = 8.160e-8
Identity = 23/61 (37.70%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:   25 LTVVRGSAYADYVRSYKMLVNGKVVGSIARNSKLELLVPSGPVTVEARIDWGRSAPLTIDA 207
            +T+ R S YAD +R+Y++L+NGK VG+IA    +   V  G  T++  +DW ++  +T  A
Sbjct:   15 ITLTRDSGYADRLRNYQVLINGKTVGAIANGKTVTFTVEPGTHTIQVCLDWAKTPVITFQA 75
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BLAST of mRNA_P-wetherbeei_contig19596.1.1 vs. uniprot
Match: A0A1H2MPM4_9ACTN (Uncharacterized protein n=1 Tax=Microlunatus sagamiharensis TaxID=546874 RepID=A0A1H2MPM4_9ACTN)

HSP 1 Score: 49.3 bits (116), Expect = 4.050e-5
Identity = 22/69 (31.88%), Postives = 39/69 (56.52%), Query Frame = 1 
Query:   31 VVRGSAYADYVRSYKMLVNGKVVGSIARNSKLELLVPSGPVTVEARIDWGRSAPLTIDAKPDVPIEVEV 237
            V R +AY D +R Y++  +G  VG +     +++ +P G  ++EARIDW RS  + +D      +++ V
Sbjct:   18 VTRSAAYRDLIRPYQLYADGHRVGEVRARQSVDIPLPVGRRSLEARIDWCRSKVVQVDVLEQECVDLTV 86
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19596.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI0012DEB2D98.160e-837.70hypothetical protein n=1 Tax=Chitinilyticum aquati... [more]
A0A1H2MPM4_9ACTN4.050e-531.88Uncharacterized protein n=1 Tax=Microlunatus sagam... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19596contigP-wetherbeei_contig19596:6..260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog319003.Bra1253DRAFT_04928
Model size255
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.89e-23
EggNOG OGs2EGPH@1|root,32PRU@2|Bacteria,1Q8S0@1224|Proteobacteria,2UY1A@28211|Alphaproteobacteria
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186176.9245095-CDS-P-wetherbeei_contig19596:5..2601683186176.9245095-CDS-P-wetherbeei_contig19596:5..260Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19596 6..260 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19596.1.1prot_P-wetherbeei_contig19596.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19596 6..260 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19596.1.1

>prot_P-wetherbeei_contig19596.1.1 ID=prot_P-wetherbeei_contig19596.1.1|Name=mRNA_P-wetherbeei_contig19596.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=85bp
MTRAATCHLTVVRGSAYADYVRSYKMLVNGKVVGSIARNSKLELLVPSGP
VTVEARIDWGRSAPLTIDAKPDVPIEVEVSNNWGA
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mRNA from alignment at P-wetherbeei_contig19596:6..260-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19596.1.1 ID=mRNA_P-wetherbeei_contig19596.1.1|Name=mRNA_P-wetherbeei_contig19596.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig19596:6..260- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGCGAGCGGCGACTTGCCATCTGACGGTAGTGCGAGGTTCGGCGTA
TGCTGACTACGTCAGATCCTACAAAATGCTAGTCAACGGCAAGGTGGTGG
GCAGCATTGCGCGCAACAGCAAGCTCGAACTGCTGGTTCCGAGCGGCCCG
GTCACGGTCGAGGCACGGATCGACTGGGGCCGGAGCGCGCCGCTGACGAT
CGACGCGAAACCGGATGTGCCGATCGAAGTCGAGGTATCCAACAATTGGG
GTGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19596:6..260-

>mRNA_P-wetherbeei_contig19596.1.1 ID=mRNA_P-wetherbeei_contig19596.1.1|Name=mRNA_P-wetherbeei_contig19596.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig19596:6..260- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGCGAGCGGCGACTTGCCATCTGACGGTAGTGCGAGGTTCGGCGTA
TGCTGACTACGTCAGATCCTACAAAATGCTAGTCAACGGCAAGGTGGTGG
GCAGCATTGCGCGCAACAGCAAGCTCGAACTGCTGGTTCCGAGCGGCCCG
GTCACGGTCGAGGCACGGATCGACTGGGGCCGGAGCGCGCCGCTGACGAT
CGACGCGAAACCGGATGTGCCGATCGAAGTCGAGGTATCCAACAATTGGG
GTGCT
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