mRNA_P-wetherbeei_contig19594.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19594.1.1
Unique NamemRNA_P-wetherbeei_contig19594.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19594.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19594contigP-wetherbeei_contig19594:6..329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1218084.BBJK01000015_gene1522
PFAMsTPR_16,TPR_17,TPR_7,TPR_8
Model size324
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.00012
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1N4HS@1224|Proteobacteria,2VMAM@28216|Betaproteobacteria,1K5Q1@119060|Burkholderiaceae
DescriptionTetratricopeptide repeat
Cds size297
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186176.882139-CDS-P-wetherbeei_contig19594:5..3021683186176.882139-CDS-P-wetherbeei_contig19594:5..302Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19594 6..302 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186176.893896-UTR-P-wetherbeei_contig19594:302..3291683186176.893896-UTR-P-wetherbeei_contig19594:302..329Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19594 303..329 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19594.1.1prot_P-wetherbeei_contig19594.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19594 6..302 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19594.1.1

>prot_P-wetherbeei_contig19594.1.1 ID=prot_P-wetherbeei_contig19594.1.1|Name=mRNA_P-wetherbeei_contig19594.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=99bp
MEASARALDKLRKGHYGQARNALESLLRKRPWSVPVRFNLALALEGLGLL
EEAQRHLERALGLDAAHADSYYNRARLLELLDLPLEARSHWARFLRLDP
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mRNA from alignment at P-wetherbeei_contig19594:6..329-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19594.1.1 ID=mRNA_P-wetherbeei_contig19594.1.1|Name=mRNA_P-wetherbeei_contig19594.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig19594:6..329- (Phaeothamnion wetherbeei SAG_119_79)
CCGCGAGGCTCGAGAAATTTTCAAGCTATGGAAGCGAGCGCCCGGGCCCT
GGACAAATTGCGCAAAGGCCACTATGGACAGGCTCGCAACGCGCTGGAAT
CGCTCCTGCGCAAACGCCCCTGGTCGGTGCCCGTGCGCTTCAATCTGGCG
CTGGCTCTCGAGGGACTGGGCCTCCTTGAGGAAGCTCAGCGCCATCTCGA
GCGGGCTCTCGGCCTGGATGCGGCCCACGCCGACAGCTACTACAACCGGG
CTCGCCTCCTAGAACTGCTCGACCTGCCCCTCGAAGCCCGTTCCCACTGG
GCCCGTTTCTTGCGTCTGGACCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19594:6..329-

>mRNA_P-wetherbeei_contig19594.1.1 ID=mRNA_P-wetherbeei_contig19594.1.1|Name=mRNA_P-wetherbeei_contig19594.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig19594:6..329- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGCGAGCGCCCGGGCCCTGGACAAATTGCGCAAAGGCCACTATGG
ACAGGCTCGCAACGCGCTGGAATCGCTCCTGCGCAAACGCCCCTGGTCGG
TGCCCGTGCGCTTCAATCTGGCGCTGGCTCTCGAGGGACTGGGCCTCCTT
GAGGAAGCTCAGCGCCATCTCGAGCGGGCTCTCGGCCTGGATGCGGCCCA
CGCCGACAGCTACTACAACCGGGCTCGCCTCCTAGAACTGCTCGACCTGC
CCCTCGAAGCCCGTTCCCACTGGGCCCGTTTCTTGCGTCTGGACCCC
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