mRNA_P-wetherbeei_contig19593.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig19593.2.1 vs. uniprot
Match: A0A7X6NXI8_9ACTN (Acyl-CoA dehydrogenase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6NXI8_9ACTN) HSP 1 Score: 222 bits (565), Expect = 3.450e-68 Identity = 130/238 (54.62%), Postives = 146/238 (61.34%), Query Frame = 1
Query: 43 ELLALTDPDDAAFGALPLPGSGATADRFLALWSFGARAPSFGRVAEAHHDAMAILAEAGRSAASAGLNGVWAAGGPDPLRLERGCAGRWHLRGSKHWCSAATFATSALVTAASPLGGT----------------------LVRVDLGRAGVQVGAPSWQSPAMAAVDTRSVHFDLDVDDTDLVGVDDWYLRRPGFWHGAVGVAASWAGCVDGVVGRLASMWRDDPHAMAHLGAIDATL 690
E LALT+ LPLPG+G TA RF LW+ AR+P GR+AEAH DA+AILAEAGRSAA GVWAAGGPDP L R AG L G+KHWCS A+ + ALVTA G LV VDL GV +G WQS A AA+DTRSV FDL VD+ ++GVDDWYLRR GFWHGAVGVAA WAG + G+V R DPHA AHLGAIDA L
Sbjct: 6 EFLALTE-------ELPLPGAGETARRFDQLWALAARSPQLGRLAEAHFDAVAILAEAGRSAAPGQRFGVWAAGGPDPATLRRTDAGL-RLVGTKHWCSGASIVSHALVTARQDTGNAAADDRGVGGSGGERGGGVDTNALVLVDLSAPGVTMGESDWQSAAFAAIDTRSVAFDLAVDEDSVIGVDDWYLRRRGFWHGAVGVAACWAGAISGIVERSVGHIPTDPHAQAHLGAIDAEL 235
BLAST of mRNA_P-wetherbeei_contig19593.2.1 vs. uniprot
Match: A0A1N7G8X8_9NOCA (Acyl-CoA dehydrogenase, middle domain n=1 Tax=Williamsia sterculiae TaxID=1344003 RepID=A0A1N7G8X8_9NOCA) HSP 1 Score: 153 bits (387), Expect = 8.430e-42 Identity = 103/204 (50.49%), Postives = 114/204 (55.88%), Query Frame = 1
Query: 88 LPLPGSGATADRFLALWSFGARAPSFGRVAEAHHDAMAILAEA-GRSAASAGLNGVWAAGGPDPLRLERGCAGRWHLRGSKHWCSAATFATSALVTAASPLGGTLVRVDLGRAGVQVGAPSWQSPAMAAVDTRSVHFDLDVDDTDLVGVDDWYLRRPGFWHGAVGVAASWAGCVDGVVGRLASMWRDDPHA--MAHLGAIDATL 690
+P PGSGAT +RF L GRV EAH DA+ I AE G L GVWAA P PL R GRW L G+K WCSAA+ AT ALVTA L VDL AG+ VG SW + M+ DTR VHFD V T + G DD YLRRPGFWHG VGVAA W G GV RL S DP +A LG +DA L
Sbjct: 21 VPRPGSGATVERFRYLAEHTRDDIPVGRVLEAHLDAVVIAAELDGPVVGDDQLWGVWAAEPPSPLLTARRNGGRWTLCGTKPWCSAASSATHALVTARVGDTRPLFAVDLAHAGIGVGETSWHAAGMSRTDTRKVHFD-GVPGTPVGGADD-YLRRPGFWHGGVGVAACWLGGATGVADRLRSRVTADPDPILLAQLGCVDAWL 222
BLAST of mRNA_P-wetherbeei_contig19593.2.1 vs. uniprot
Match: UPI001FEAD6AA (acyl-CoA/acyl-ACP dehydrogenase n=1 Tax=Pseudoxanthomonas suwonensis TaxID=314722 RepID=UPI001FEAD6AA) HSP 1 Score: 146 bits (368), Expect = 6.410e-39 Identity = 94/205 (45.85%), Postives = 113/205 (55.12%), Query Frame = 1
Query: 85 ALPLPGSGATADRFLALWSFGARAPSFGRVAEAHHDAMAILAEAGRSAASAG-LNGVWAAGGPDPLRLERGCAGRWHLRGSKHWCSAATFATSALVTAASPLGGTLVRVDLGRAGVQVGAPSWQSPAMAAVDTRSVHFDLDVDDTDLVGVDDWYLRRPGFWHGAVGVAASWAGCVDGVVGRLASMWR--DDPHAMAHLGAIDATL 690
ALPLPG G T R+ AL GA + +V EAHHDA+AILAE G + G L VWAA GP+ + R G L G K WCS A+F +ALVTA S LV VDL + GV+V AP W++ MAA+ + V FD +G YL RPGFWHG GVAA W G + R+A R DPH A LG +D L
Sbjct: 26 ALPLPGRGDTLARWRALAGIGAEDLALAKVLEAHHDALAILAELGAPRPAPGTLLAVWAAEGPESTLVVRDGPGSARLHGRKPWCSGASFVDAALVTATSGDARQLVLVDLRQPGVRVPAPQWEAIGMAAIPSGPVEFDAVP--CQRIGAPGAYLDRPGFWHGGAGVAACWLGAAVAIAQRMADPARVARDPHLAATLGRVDMAL 228
BLAST of mRNA_P-wetherbeei_contig19593.2.1 vs. uniprot
Match: A0A0Q5VNM4_9ACTN (Acyl-CoA dehydrogenase n=2 Tax=Geodermatophilaceae TaxID=85030 RepID=A0A0Q5VNM4_9ACTN) HSP 1 Score: 144 bits (364), Expect = 2.620e-38 Identity = 105/237 (44.30%), Postives = 123/237 (51.90%), Query Frame = 1
Query: 1 ARPMDVRRVRAEDSELLALTDPDDAAFG-ALPLPGSGATADRFLALWSFGARAPSFGRVAEAHHDAMAILAEAGRSAASAGLN-GVWAAGGPDPLRLERGCAGRWHLRGSKHWCSAATFATSALVTAASPLGGTLVRVDLGRAGVQVGAPSWQSPAMAAVDTRSVHFDLDVDDTDL--VGVDDWYLRRPGFWHGAVGVAASWAGCVDGVVGRLASMWRD---DPHAMAHLGAIDATL 690
A P+DVR A++ A D A G PLPG+GATADR+ AL + G R+AE H DA+A+LAE G GVWAA P R AG W L G+K WCS A T+ALVTA + G L VDL AGV W S MA DT D+++DD VG YL RPGFWHG +GVAA WAG GV LA + R DPH A GA+D L
Sbjct: 2 ATPLDVRDRWADEVHRAATAFTDLLAAGWGPPLPGAGATADRWAALHALGRTDLPLARLAEGHADAVAVLAELDGPTVERGERLGVWAAEPPSGRVSARRTAGGWRLAGTKQWCSGARACTAALVTAHAEDGRRLFLVDLSAAGVTPRPGRWVSAGMAGSDTA----DVELDDVPALAVGGPRAYLDRPGFWHGGIGVAAVWAGGATGVADALADVVRTAAPDPHRDATWGAVDVAL 234
BLAST of mRNA_P-wetherbeei_contig19593.2.1 vs. uniprot
Match: UPI001E5C888B (acyl-CoA dehydrogenase n=1 Tax=Corynebacterium freneyi TaxID=134034 RepID=UPI001E5C888B) HSP 1 Score: 144 bits (363), Expect = 3.770e-38 Identity = 107/208 (51.44%), Postives = 115/208 (55.29%), Query Frame = 1
Query: 88 LPLPGSGATADRFLALWSFGARAP-SFGRVAEAHHDAMAILAEAG--RSAASAGLNGVWAAGGPDP-LRLERGCAGRWHLRGSKHWCSAATFATSALVTAASPLGGTLVRVDLGRAGVQVGAPSWQSPAMAAVDTRSVHFDLDVDDTDLVGVDDWYLRRPGFWHGAVGVAASWAGCVDG---VVGRLASMWRDDPHAMAHLGAIDATL 690
LP PGSG TA RFLALW G RA S GR+AEA HDA AILAE G R A L GVWAA P P L R +G W L G K WCS T ALVTA L DL GV A +W + MAA T V FD T VG YL RPGFWHG +GVAA W G V G V+ R AS PHA+AHLGA+DA L
Sbjct: 8 LPTPGSGDTAARFLALWE-GCRADVSEGRLAEADHDADAILAEIGDGRRVADGELWGVWAAEPPHPVLEARRDDSGGWLLDGVKAWCSGVGRCTHALVTARVDGKPRLFAADLRHPGVSGSADNWVNAGMAATATGEVAFDAVPAVT--VGGPREYLDRPGFWHGGIGVAACWLGGVSGLCDVLARTASR-HGKPHALAHLGAVDAAL 211
BLAST of mRNA_P-wetherbeei_contig19593.2.1 vs. uniprot
Match: A0A0Q6H1Q4_9NOCA (Acyl-CoA dehydrogenase n=5 Tax=Rhodococcus TaxID=1827 RepID=A0A0Q6H1Q4_9NOCA) HSP 1 Score: 142 bits (358), Expect = 1.580e-37 Identity = 97/207 (46.86%), Postives = 112/207 (54.11%), Query Frame = 1
Query: 82 GALPLPGSGATADRFLALWSFGARAPSFGRVAEAHHDAMAILAEAGRSAASAG-LNGVWAAGGPDPLRLERGCAGRWHLRGSKHWCSAATFATSALVTAASPLGGTLVRVDLGRAGVQVGAPSWQSPAMAAVDTRSVHFDLDVDDTDLVGVDDWYLRRPGFWHGAVGVAASWAGCVDGVVG---RLASMWRDDPHAMAHLGAIDATL 690
G LPLPGSGAT +R+ AL + GR+ EAH+DA AILAEAG S+G L GVWAA + R G W L G K WCS A T ALVTA + L V L R+ V+ SW M DT +V FD VG D+Y R GFWHGA+GVAA W G GV R A R PHA+AHLGA+DA L
Sbjct: 17 GNLPLPGSGATGERWTALTDWTRADTVVGRLLEAHYDAAAILAEAGADPVSSGQLWGVWAAEVAPAVEARRLADGSWTLSGRKQWCSGAHRCTHALVTARADGVSRLFAVVLDRSTVRPEPNSWPPVGMHDSDTGAVSFDGAR--ASAVGDPDFYTGRAGFWHGAIGVAACWFGAASGVAEPLYRRAGEGRAGPHALAHLGAVDAAL 221
BLAST of mRNA_P-wetherbeei_contig19593.2.1 vs. uniprot
Match: A0A842JW35_9NOCA (Acyl-CoA dehydrogenase n=1 Tax=Rhodococcus sp. 4CII TaxID=2834580 RepID=A0A842JW35_9NOCA) HSP 1 Score: 142 bits (358), Expect = 1.690e-37 Identity = 95/205 (46.34%), Postives = 113/205 (55.12%), Query Frame = 1
Query: 88 LPLPGSGATADRFLALWSFGARAPSFGRVAEAHHDAMAILAEA-GRSAASAGLNGVWAAGGPDPLRLERGCAGRWHLRGSKHWCSAATFATSALVTAASPLGGTLVRVDLGRAGVQVGAPSWQSPAMAAVDTRSVHFDLDVDDTDLVGVDDWYLRRPGFWHGAVGVAASWAGCVDGVVGRL---ASMWRDDPHAMAHLGAIDATL 690
LPLPG GATADR+ L + +R + GR+ EAH DA AILAE G A + GVWA+ P P+ + W LRG+K WCS A+ T ALVTA L VDL V G W++P MAA DT SV FD DV +G YL RPGFWHG +GVAA W G V L A R D H +AHLGA+D +
Sbjct: 25 LPLPGGGATADRWAHLTRWSSRDLAVGRLLEAHADADAILAELDGTRAGRDEVWGVWASEPPHPVLDASESSSGWRLRGTKAWCSGASMCTHALVTARVAGQPRLFAVDLREPRVAAGTGGWRNPGMAATDTESVTFD-DVP-ARPIGAATAYLERPGFWHGGIGVAACWFGGALAVAEPLRARAGSGRADSHQLAHLGAVDVAV 227
BLAST of mRNA_P-wetherbeei_contig19593.2.1 vs. uniprot
Match: F4CVP2_PSEUX (Putative acyl-CoA dehydrogenase-related protein n=2 Tax=Pseudonocardia dioxanivorans TaxID=240495 RepID=F4CVP2_PSEUX) HSP 1 Score: 142 bits (358), Expect = 2.700e-37 Identity = 93/201 (46.27%), Postives = 111/201 (55.22%), Query Frame = 1
Query: 88 LPLPGSGATADRFLALWSFGARAPSFGRVAEAHHDAMAILAEAGRSAASAGLNGVWAAGGPDPLRLERGCAGRWHLRGSKHWCSAATFATSALVTAASPLGGTLVRVDLGRAGVQVGAPSWQSPAMAAVDTRSVHFD-LDVDDTDLVGVDDWYLRRPGFWHGAVGVAASWAGCVDGVVG--RLASMWRD-DPHAMAHLGAI 678
LP PG+GATA R+ AL +G SF R+ E H DA+AILAEAGR+ GVWAA + G AG W LRG +CS A ALV AA+P G + V L R GV+ A +WQ+ MA D+ V D + VDD LVG WY RPGFWHG GVAA W G GV+ RL D DPH +A G +
Sbjct: 43 LPAPGAGATAQRWAALARWGRTELSFARLCEGHTDAVAILAEAGRTPVPGATYGVWAARSGGTGAVLAGGAGAWRLRGRVRFCSGAHGLDRALVVAAAPDGSRIADVPLARPGVRPVAGTWQTVGMARSDSADVDLDDVPVDDDALVGGPGWYTARPGFWHGGGGVAAVWLGGAAGVLDDLRLVVTATDPDPHRLALFGEL 243
BLAST of mRNA_P-wetherbeei_contig19593.2.1 vs. uniprot
Match: A0A0S9R166_9ACTN (Uncharacterized protein n=5 Tax=Actinomycetia TaxID=1760 RepID=A0A0S9R166_9ACTN) HSP 1 Score: 140 bits (354), Expect = 4.460e-37 Identity = 92/203 (45.32%), Postives = 110/203 (54.19%), Query Frame = 1
Query: 88 LPLPGSGATADRFLALWSFGARAPSFGRVAEAHHDAMAILAEAGRSAASAGLNGVWAAGGPDPLRLERGCAGRWHLRGSKHWCSAATFATSALVTAASPLGGTLVRVDLGRAGVQVG--APSWQSPAMAAVDTRSVHFDLDVDDTDLVGVDDWYLRRPGFWHGAVGVAASWAGCVDGVVGRLASMWRDDPHAMAHLGAIDATL 690
LPLPGSGAT DR AL + G S ++AE HHDA+AI AE + G+ VWAA P + RWHL G+K +CS A T ALVTA L VDL + GV V AP+W P MA D R+V LD D VG Y++RPGFWHGA+G+AA W G V L R D H +AH GA+ A L
Sbjct: 16 LPLPGSGATHDRLDALVALGHEDLSLAKLAEPHHDAVAIGAELDHPIDTDGVWAVWAAAPPFAVVRATRTGDRWHLDGTKAFCSGADLVTHALVTAEDDGHDRLFAVDLDQPGVAVDEQAPTWVGPGMA--DARTVTLRLDAVDAVDVGAPGAYVQRPGFWHGAIGIAAVWTGGARAVADVLERSARLDEHGLAHRGAVRAAL 216
BLAST of mRNA_P-wetherbeei_contig19593.2.1 vs. uniprot
Match: A0A0Q5W4Z2_9ACTN (Acyl-CoA dehydrogenase n=2 Tax=Modestobacter sp. Leaf380 TaxID=1736356 RepID=A0A0Q5W4Z2_9ACTN) HSP 1 Score: 140 bits (354), Expect = 4.570e-37 Identity = 100/211 (47.39%), Postives = 113/211 (53.55%), Query Frame = 1
Query: 70 DAAFGALPLPGSGATADRFLALWSFGARAPSFGRVAEAHHDAMAILAEAGRSAASAGLN-GVWAAGGPDPLRLERGCAGRWHLRGSKHWCSAATFATSALVTAASPLGGTLVRVDLGRAGVQVGAPSWQSPAMAAVDTRSVHFDLDVDDTDLVGVDDWYLRRPGFWHGAVGVAASWAGCVDGVVGRLASMWR---DDPHAMAHLGAIDATL 690
DA + A PLPGSGATA+R+ AL GA R+AE H DA+A+LAE A AG GVWAA P G W L G K WCS A TSALVTA + G L VDLG GV +W +P MA DT V D DV VG YL RPGFWHG +GVAA WAG GV LA + +DPH A GA+D L
Sbjct: 3 DAGWSA-PLPGSGATAERWRALHDLGATDLPLARLAEGHADAVAVLAELDGPAPGAGERLGVWAAEPPSGRVGAERAGGGWRLSGVKQWCSGARVCTSALVTAHADDGRRLFLVDLGVRGVAPSPGAWAAPGMAGSDTADVLLD-DVPAL-AVGGPRAYLDRPGFWHGGIGVAAVWAGGAAGVARALADVVATAPEDPHRDAAWGAVDVAL 210 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19593.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig19593.2.1 >prot_P-wetherbeei_contig19593.2.1 ID=prot_P-wetherbeei_contig19593.2.1|Name=mRNA_P-wetherbeei_contig19593.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=227bp MDVRRVRAEDSELLALTDPDDAAFGALPLPGSGATADRFLALWSFGARAPback to top mRNA from alignment at P-wetherbeei_contig19593:583..1272+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig19593.2.1 ID=mRNA_P-wetherbeei_contig19593.2.1|Name=mRNA_P-wetherbeei_contig19593.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=690bp|location=Sequence derived from alignment at P-wetherbeei_contig19593:583..1272+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig19593:583..1272+ >mRNA_P-wetherbeei_contig19593.2.1 ID=mRNA_P-wetherbeei_contig19593.2.1|Name=mRNA_P-wetherbeei_contig19593.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=681bp|location=Sequence derived from alignment at P-wetherbeei_contig19593:583..1272+ (Phaeothamnion wetherbeei SAG_119_79)back to top |