mRNA_P-wetherbeei_contig1959.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1959.1.1
Unique NamemRNA_P-wetherbeei_contig1959.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1959.1.1 vs. uniprot
Match: D7G1T1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T1_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 2.130e-66
Identity = 188/365 (51.51%), Postives = 239/365 (65.48%), Query Frame = 1 
Query:  115 KKGLVEVDPRVRDFIKQAEAGDVKRLQNALKSRKFEVDADDAEGATALMRACGAGQLEAVKLLVDKGAGMWCVGPHKDPKNAFMWAAHEGRLEVIRYFVEEVGIAD-GINSTAGKSKRKSAMDYALERQEHHDRERSDQKYQVLAYIRQKGGVFGEGVTDPAIVFEAAAQGDAHYVLYCIVSCPAHLTTRYGSHAYSLLHVAANAGHLELAIVLLAYEAAVEASDRAGRTPLMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLSRAAP------------------DRPSEQA-------RRLLAVGDSTGRTPLILTFSGGVHVPVIRYLLGVLDGSLDPIAIGRP 1131
            KK  +EV+P V +FI  A  GD K ++   K+ K EVD DDA+G TALMRACG G L+ V+ L+  GAGMWC GP  DPK  FMWAAH GRL++IRYF+EEVG+ D  +N  AG+S RK+A+DYAL+   + D E  D+K  VLAY+ + G   GEGVTDP  VF+ AA+GD +YV YC+ +  + +   +G+   SLLHVA N G+ +L   L+++ A +EA +    TPL+   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX L+R  P                  + P  Q          LL + +  G TP+I  F+GGVHV VIRY++GV DG++DP+  G P
Sbjct:    8 KKAALEVNPLVLEFIDAATIGDTKTVKKIAKAGKIEVD-DDADGVTALMRACGNGHLKTVEELLVHGAGMWCAGPTSDPKTPFMWAAHHGRLDIIRYFIEEVGLDDLAVNKGAGRSGRKTALDYALDAGFNLDEEAKDRKALVLAYLHENGAEHGEGVTDPETVFDGAARGDVNYVHYCLEANGSIIKLSHGAEGSSLLHVACNTGNTDLTQSLISHGADLEARNAVEGTPLISAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLARDCPAAAPGSDDGAIVGAILEGEAPEHQPPARILSPHELLVMKNKAGHTPVIKAFAGGVHVAVIRYVVGVQDGNVDPVKCGVP 371
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BLAST of mRNA_P-wetherbeei_contig1959.1.1 vs. uniprot
Match: A0A6H5KEL6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEL6_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 2.690e-66
Identity = 189/363 (52.07%), Postives = 237/363 (65.29%), Query Frame = 1 
Query:  115 KKGLVEVDPRVRDFIKQAEAGDVKRLQNALKSRKFEVDADDAEGATALMRACGAGQLEAVKLLVDKGAGMWCVGPHKDPKNAFMWAAHEGRLEVIRYFVEEVGIAD-GINSTAGKSKRKSAMDYALERQEHHDRERSDQKYQVLAYIRQKGGVFGEGVTDPAIVFEAAAQGDAHYVLYCIVSCPAHLTTRYGSHAYSLLHVAANAGHLELAIVLLAYEAAVEASDRAGRTPLMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLSRAAP------------------DRPSEQA-------RRLLAVGDSTGRTPLILTFSGGVHVPVIRYLLGVLDGSLDPIAIG 1125
            K   ++V P+V +FI  A  GD   ++   K+ K EVD DDA+G TALMRACG G L+ V+ L+  GAGMWC GP  DPK  FMWAAH GRL++IRYFVEEVG+ D  IN  AG+S RK+A+DYAL+   + D    D+K  VLAY+ + G   GEGVTDP  VF  AA GD +YV YC+ +  + + + +G+   SLLHVA N G+++L   L+++ A +EA +   RTPL+  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LL+R  P                  D P  Q          LL + +  G TP+I  F+GGVHV VIRY++GV DG++DPI  G
Sbjct:    8 KNAALQVSPQVLEFIDAAAIGDTNTVKKIAKAGKIEVD-DDADGVTALMRACGNGHLKTVEELLLHGAGMWCAGPTSDPKTPFMWAAHHGRLDIIRYFVEEVGLDDLAINKAAGRSGRKTALDYALDAGINLDEGAKDRKALVLAYLHENGAEHGEGVTDPETVFNGAAHGDVNYVHYCLEANGSIIKSSHGAERSSLLHVACNTGNIDLTQNLISHGADLEARNAVERTPLITAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLARDCPAAAPGSDDGAIVGAILEGDAPEHQPPARILSPHELLVMKNKAGHTPVIKAFAGGVHVAVIRYVVGVQDGNVDPIKCG 369
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1959.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1T1_ECTSI2.130e-6651.51Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KEL6_9PHAE2.690e-6652.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1959contigP-wetherbeei_contig1959:1588..3841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G1T1
PFAMsAnk_2,Ank_4,Ank_5,FYVE,SAM_1
Model size1415
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00078
KEGG koko:K00921
KEGG ReactionR05802,R10951
KEGG Pathwayko00562,ko04070,ko04145,ko04810,map00562,map04070,map04145,map04810
Hectar predicted targeting categoryother localisation
GOsGO:0008150,GO:0018996,GO:0022404,GO:0032501,GO:0042303,GO:0042395
Exons4
Evalue3.49e-67
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota
EC2.7.1.150
Descriptionprotein ubiquitination
Cds size1413
COG categoryI
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186176.6751919-CDS-P-wetherbeei_contig1959:1589..21401683186176.6751919-CDS-P-wetherbeei_contig1959:1589..2140Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1959 1590..2140 -
1683186176.686789-CDS-P-wetherbeei_contig1959:2500..28001683186176.686789-CDS-P-wetherbeei_contig1959:2500..2800Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1959 2501..2800 -
1683186176.6978786-CDS-P-wetherbeei_contig1959:2982..33281683186176.6978786-CDS-P-wetherbeei_contig1959:2982..3328Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1959 2983..3328 -
1683186176.7055502-CDS-P-wetherbeei_contig1959:3625..38411683186176.7055502-CDS-P-wetherbeei_contig1959:3625..3841Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1959 3626..3841 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1959.1.1prot_P-wetherbeei_contig1959.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1959 1590..3841 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1959.1.1

>prot_P-wetherbeei_contig1959.1.1 ID=prot_P-wetherbeei_contig1959.1.1|Name=mRNA_P-wetherbeei_contig1959.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=471bp
LRPSSRLLGDSGSRRPQRTIKKDFSSPSGDPQRAKMPKKKGLVEVDPRVR
DFIKQAEAGDVKRLQNALKSRKFEVDADDAEGATALMRACGAGQLEAVKL
LVDKGAGMWCVGPHKDPKNAFMWAAHEGRLEVIRYFVEEVGIADGINSTA
GKSKRKSAMDYALERQEHHDRERSDQKYQVLAYIRQKGGVFGEGVTDPAI
VFEAAAQGDAHYVLYCIVSCPAHLTTRYGSHAYSLLHVAANAGHLELAIV
LLAYEAAVEASDRAGRTPLMMAAQAGHEPVLRLLMEHDARIDAQDLNGST
ALHMAAFSGHLPCVKALLSRAAPDRPSEQARRLLAVGDSTGRTPLILTFS
GGVHVPVIRYLLGVLDGSLDPIAIGRPQREYRNSELEAEATQAHQDLLSG
KGGSAMPASMSADGGATGAGGGSFRRIVSTPDVVKPRSLAARRLRSGRAA
SVGDTAAPGAAAPTAAAAAAS
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mRNA from alignment at P-wetherbeei_contig1959:1588..3841-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1959.1.1 ID=mRNA_P-wetherbeei_contig1959.1.1|Name=mRNA_P-wetherbeei_contig1959.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2254bp|location=Sequence derived from alignment at P-wetherbeei_contig1959:1588..3841- (Phaeothamnion wetherbeei SAG_119_79)
CTCCGTCCATCGTCGCGACTTCTAGGCGATAGCGGCAGCCGTCGCCCCCA
GCGAACAATCAAAAAAGATTTCTCATCTCCCTCGGGAGATCCCCAGCGCG
CCAAAATGCCCAAAAAGAAGGGCCTAGTCGAGGTCGATCCTCGAGTCCGT
GACTTCATCAAGCAGGCAGAGGCCGGCGACGTCAAACGGCTCCAAAATGC
GCTTAAGAGCCGCAAGGTTTGGCCTTCGTTTTTCGATTGATCTTCAGTAG
TGTCTGTCTCTCGAGGATGTTCAGATCGAAAAGGGAGTGACCTTGCGGCA
CCTTGGTTCCTCCAAACCAGACGACCCTTTTCACGTGACTTCTGGGCGTC
GATCATGCGTATACTTTTAAACTCCTCCATATGCCACTGGGGGCTTCCGA
CTGGTTCACACGCCGCTTTCGTTTCGACCAACAAAATCCATTGCTCTTCA
AACGGCAACACGTTTCCTTCCCCTTCTCGCCCCATCCATTCCTCCTCGTT
CCAAACCCCAAAGTTTGAAGTGGACGCCGACGACGCGGAGGGCGCAACAG
CGCTGATGCGGGCGTGCGGCGCCGGCCAGCTGGAAGCCGTCAAGCTGCTC
GTTGACAAGGGCGCCGGTATGTGGTGCGTCGGCCCCCACAAGGACCCCAA
GAACGCCTTCATGTGGGCGGCGCACGAAGGCCGCCTGGAAGTGATCCGCT
ACTTTGTCGAGGAGGTTGGCATTGCCGACGGCATCAACTCCACGGCGGGG
AAGAGCAAACGCAAGAGCGCCATGGACTACGCGCTGGAGCGGCAGGAGCA
CCACGACAGAGAGCGCTCCGACCAAAAGTACCAGGTCCTAGCCTACATCC
GCCAGAAAGGTGTGAAGGGTAAAAGAGAAAGGCGAAAATAGAAAAGAAAA
ACGTTTGATTTCTTCAATCCCAGCGCATGCCTTTCGTTTCACTTCAATCC
TTTGGATCGAGAAAGCTCTGATAACTGTCCTCTGCCAAATCCTCGCCTTG
TGTGCGCGTATTTCGGACGGCGTTGCCGGCCGCGGCCGCAGGTGGCGTGT
TCGGCGAGGGCGTCACGGACCCGGCTATTGTGTTCGAGGCGGCGGCGCAG
GGCGACGCCCACTACGTGCTCTATTGCATCGTGTCGTGCCCAGCGCACCT
GACGACGCGCTATGGTTCGCATGCCTACTCGCTGCTGCACGTGGCGGCCA
ACGCCGGCCACCTCGAGCTGGCCATCGTGCTGCTGGCGTACGAGGCGGCC
GTCGAAGCTAGCGATCGCGCCGGTCGGACGCCGCTCATGATGGCGGCGCA
GGCTGGCCACGAGCCCGTCCTTCGCCTCCTCATGGAGCACGGTGAGTACT
TTTACCTCTTTCAGATTATAGAGTCACCTGACCGGGAAAGCGTGTATGAG
CCGGGCTTATGGAATACGGGGCTCGTCTGCTTTCTCTTTTTTGGCTACGC
ACGTTTCCTGGCAGGTAAGAGAGAGCAAAGTAGGCCGCCACTATGAAAAA
AGGCTCTCGGAATCGCGTTTTGAACGCGGTTCCCGGGAAATCCCGTTCTA
AAAGCTGCCAAAAATGACTCAGAAGAGAAGGAATAGACCTGCTTGGCAAT
GGGCAACCCTGCCGCCTTGCTGCTGTAACCGCTACCTCGTCCCCTTCAAT
TTTTCTTCATCACATTCTTGGCCGCTTGTCGTCATCATCCTCGACCTCCA
GATGCGCGCATCGACGCACAGGACCTGAACGGCAGCACGGCGCTGCACAT
GGCGGCCTTCAGCGGCCATCTCCCCTGTGTCAAGGCGCTCCTCTCGCGTG
CCGCCCCCGACCGCCCCTCGGAGCAGGCACGGCGGCTGCTGGCCGTCGGC
GACTCCACCGGCCGGACGCCGCTCATCCTCACCTTCTCCGGCGGCGTCCA
CGTGCCGGTCATACGCTACCTGCTCGGCGTTCTGGACGGCAGCCTGGACC
CCATTGCCATCGGCAGGCCGCAGCGCGAGTACCGCAACAGCGAGCTCGAG
GCCGAGGCGACGCAGGCGCACCAGGACCTGCTCTCCGGGAAGGGTGGCAG
CGCGATGCCCGCCTCGATGTCCGCCGATGGCGGTGCGACCGGCGCTGGTG
GCGGGTCGTTCCGCAGGATAGTGTCCACACCGGACGTGGTCAAGCCCCGC
AGCCTTGCAGCGCGGCGCCTGCGGAGCGGACGCGCCGCCAGCGTCGGCGA
CACGGCTGCGCCCGGCGCCGCCGCCCCCACAGCCGCCGCTGCGGCTGCCT
CCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1959:1588..3841-

>mRNA_P-wetherbeei_contig1959.1.1 ID=mRNA_P-wetherbeei_contig1959.1.1|Name=mRNA_P-wetherbeei_contig1959.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1413bp|location=Sequence derived from alignment at P-wetherbeei_contig1959:1588..3841- (Phaeothamnion wetherbeei SAG_119_79)
CTCCGTCCATCGTCGCGACTTCTAGGCGATAGCGGCAGCCGTCGCCCCCA
GCGAACAATCAAAAAAGATTTCTCATCTCCCTCGGGAGATCCCCAGCGCG
CCAAAATGCCCAAAAAGAAGGGCCTAGTCGAGGTCGATCCTCGAGTCCGT
GACTTCATCAAGCAGGCAGAGGCCGGCGACGTCAAACGGCTCCAAAATGC
GCTTAAGAGCCGCAAGTTTGAAGTGGACGCCGACGACGCGGAGGGCGCAA
CAGCGCTGATGCGGGCGTGCGGCGCCGGCCAGCTGGAAGCCGTCAAGCTG
CTCGTTGACAAGGGCGCCGGTATGTGGTGCGTCGGCCCCCACAAGGACCC
CAAGAACGCCTTCATGTGGGCGGCGCACGAAGGCCGCCTGGAAGTGATCC
GCTACTTTGTCGAGGAGGTTGGCATTGCCGACGGCATCAACTCCACGGCG
GGGAAGAGCAAACGCAAGAGCGCCATGGACTACGCGCTGGAGCGGCAGGA
GCACCACGACAGAGAGCGCTCCGACCAAAAGTACCAGGTCCTAGCCTACA
TCCGCCAGAAAGGTGGCGTGTTCGGCGAGGGCGTCACGGACCCGGCTATT
GTGTTCGAGGCGGCGGCGCAGGGCGACGCCCACTACGTGCTCTATTGCAT
CGTGTCGTGCCCAGCGCACCTGACGACGCGCTATGGTTCGCATGCCTACT
CGCTGCTGCACGTGGCGGCCAACGCCGGCCACCTCGAGCTGGCCATCGTG
CTGCTGGCGTACGAGGCGGCCGTCGAAGCTAGCGATCGCGCCGGTCGGAC
GCCGCTCATGATGGCGGCGCAGGCTGGCCACGAGCCCGTCCTTCGCCTCC
TCATGGAGCACGATGCGCGCATCGACGCACAGGACCTGAACGGCAGCACG
GCGCTGCACATGGCGGCCTTCAGCGGCCATCTCCCCTGTGTCAAGGCGCT
CCTCTCGCGTGCCGCCCCCGACCGCCCCTCGGAGCAGGCACGGCGGCTGC
TGGCCGTCGGCGACTCCACCGGCCGGACGCCGCTCATCCTCACCTTCTCC
GGCGGCGTCCACGTGCCGGTCATACGCTACCTGCTCGGCGTTCTGGACGG
CAGCCTGGACCCCATTGCCATCGGCAGGCCGCAGCGCGAGTACCGCAACA
GCGAGCTCGAGGCCGAGGCGACGCAGGCGCACCAGGACCTGCTCTCCGGG
AAGGGTGGCAGCGCGATGCCCGCCTCGATGTCCGCCGATGGCGGTGCGAC
CGGCGCTGGTGGCGGGTCGTTCCGCAGGATAGTGTCCACACCGGACGTGG
TCAAGCCCCGCAGCCTTGCAGCGCGGCGCCTGCGGAGCGGACGCGCCGCC
AGCGTCGGCGACACGGCTGCGCCCGGCGCCGCCGCCCCCACAGCCGCCGC
TGCGGCTGCCTCC
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