mRNA_P-wetherbeei_contig19587.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19587.1.1
Unique NamemRNA_P-wetherbeei_contig19587.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19587.1.1 vs. uniprot
Match: A0A7X6XL69_9BACT (DUF2264 domain-containing protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7X6XL69_9BACT)

HSP 1 Score: 236 bits (603), Expect = 1.710e-72
Identity = 120/191 (62.83%), Postives = 141/191 (73.82%), Query Frame = 1
Query:    1 SNNWVAMRALSHSLVAQKTGRPEDRERAGNLWSRVLSWQSESGLFVDSPGGLACPPTYHAKFCAMLALAQEFTDQDESGQMRQALLRGLDSLAGLVSPGGVLIPYGRSRHTLFGYAAAILALNWGAR-HADIKYAAPAHRLLKRLSAFQQGDGHIPCLLGPGEDRKANWDVYINNPDYNSYAAALLLLTGN 570
            SNNWVAMRAL++SL A  TG   D   A  LW +VLSWQ+  GLF+DSPGG A P TYHAKFCAMLALA   T +D S  M  AL  GLD+L  LVSP G+L+PYGRSR+TLFGYAAA+LAL  GA    + +YAA +  L  RL+ FQ+ DGHIPC+L  GE  KA+WDVY+NNPDYN+YAAALLLL G+
Sbjct:  129 SNNWVAMRALNYSLRAHLTGSKSDTREADRLWEKVLSWQTADGLFIDSPGGEATPVTYHAKFCAMLALAWTETGRDSSA-MAHALRHGLDALYHLVSPSGMLVPYGRSRNTLFGYAAALLALRRGATLFQETRYAAASTLLEARLTRFQRPDGHIPCVLNDGEAEKADWDVYVNNPDYNAYAAALLLLAGD 318          
BLAST of mRNA_P-wetherbeei_contig19587.1.1 vs. uniprot
Match: A0A7X7A5W3_9BACT (DUF2264 domain-containing protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7X7A5W3_9BACT)

HSP 1 Score: 224 bits (571), Expect = 7.360e-68
Identity = 115/188 (61.17%), Postives = 140/188 (74.47%), Query Frame = 1
Query:    1 SNNWVAMRALSHSLVAQKTGRPEDRERAGNLWSRVLSWQSESGLFVDSPGGLACPPTYHAKFCAMLALAQEFTDQDESGQMRQALLRGLDSLAGLVSPGGVLIPYGRSRHTLFGYAAAILALNWGAR-HADIKYAAPAHRLLKRLSAFQQGDGHIPCLLGPGEDRKANWDVYINNPDYNSYAAALLLL 561
            SNNWVAMRAL++SL A +TG   D   A  LW +V+SWQ+  GLF+DSPGG A P TYHAKFCAMLALA   T ++ S +M  AL  GLD+L  LVSP G+L+PYGRSR+TLFGYAAAILAL  GA    + +YAA +  L  RL+ +Q+ DGHIPC+L  GE  K +WDVY+NNPDYN+YAAA+LLL
Sbjct:  109 SNNWVAMRALNYSLRA-RTGSKSDAREADRLWEKVISWQTADGLFIDSPGGHATPVTYHAKFCAMLALASMETGRNSS-EMVDALRHGLDALCHLVSPTGMLVPYGRSRNTLFGYAAAILALRRGAALFQERRYAAVSALLEARLARYQRPDGHIPCVLNDGEAEKRDWDVYVNNPDYNAYAAAMLLL 294          
BLAST of mRNA_P-wetherbeei_contig19587.1.1 vs. uniprot
Match: A0A2H5ZV83_9BACT (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A2H5ZV83_9BACT)

HSP 1 Score: 110 bits (275), Expect = 9.990e-25
Identity = 77/197 (39.09%), Postives = 103/197 (52.28%), Query Frame = 1
Query:    1 SNNWVAMRALSHSLVAQKTGRPEDRERAGNLWSR-VLSWQSESGLFVDSP--GGLA-CPP-TYHAKFCAMLALAQEFTDQDESGQMRQALLRGLDSLAGLVSPGGVLIPYGRSRHTLFGYAAAI------LALNWGARHADIKYAAPAHRLLKRLSAFQQGDGHIPCLLGPGEDRKANWDVYINNPDYNSYAAALLL 558
            +NNW AMRA+          RP D E A     R VL  Q E+GL+ D P  GGL  C P TYHAKFCAMLA+   F    + GQ   AL RG+ +LA L +P G  + +GRS ++L+GYAAA+      LAL           A  A R+ + L+   + DG       P E  +  WD Y++  DY ++AA L++
Sbjct:  129 TNNWHAMRAVCLLQRGMACNRPTDVEAALRCLRRDVLPLQDEAGLWADYPPGGGLRRCTPLTYHAKFCAMLAM---FVRDLQDGQAADALRRGVVALADLCAPDGETLYFGRSCNSLYGYAAALYATSVALALGVAQEEERAAVAWAADRIREFLARLVRPDGSFRTFPTPFERERLGWDDYVHRLDYAAFAALLMV 322          
BLAST of mRNA_P-wetherbeei_contig19587.1.1 vs. uniprot
Match: A0A2H5ZR22_9BACT (Uncharacterized protein n=1 Tax=bacterium HR31 TaxID=2035426 RepID=A0A2H5ZR22_9BACT)

HSP 1 Score: 107 bits (268), Expect = 8.770e-24
Identity = 75/200 (37.50%), Postives = 99/200 (49.50%), Query Frame = 1
Query:    1 SNNWVAMRALSHSLVAQKTGRPEDRERAGN-LWSRVLSWQSESGLFVDSP-----GGLACPPTYHAKFCAMLALAQEFTDQDESGQMRQALLRGLDSLAGLVSPGGVLIPYGRSRHTLFGYAAAILALNWGARHADI------KYAAPAHRLLKRLSAFQQGDGHIPCLLGPGEDRKANWDVYINNPDYNSYAAALLLLT 564
            +NNW AMRA+         GR  D E A   +   VL  Q  SGLF D P     G    P TYHAKFCAMLA+   F       Q+++AL RG+ +L  L +P G  + +GRS ++L+GYAA + AL      A +      + AA A R+   L      DG       P E  +  WD Y+N  DY ++AA LL+ T
Sbjct:  129 TNNWHAMRAVCLLQRGLALGRAADVEAARRCMQHEVLPLQGGSGLFADYPPRGSAGDRCTPLTYHAKFCAMLAM---FLSDLPDAQVQEALRRGVIALTYLCAPDGETLYFGRSCNSLYGYAATLYALRRSLEQAVVGGEQATRAAAAASRVAGFLGHLLWADGASRTYPTPFERERLGWDDYVNRLDYAAFAAYLLVQT 325          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19587.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7X6XL69_9BACT1.710e-7262.83DUF2264 domain-containing protein n=1 Tax=Armatimo... [more]
A0A7X7A5W3_9BACT7.360e-6861.17DUF2264 domain-containing protein n=1 Tax=Armatimo... [more]
A0A2H5ZV83_9BACT9.990e-2539.09Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]
A0A2H5ZR22_9BACT8.770e-2437.50Uncharacterized protein n=1 Tax=bacterium HR31 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19587contigP-wetherbeei_contig19587:665..1234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1158760.AQXP01000053_gene1484
Model size570
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.05e-09
EggNOG OGs2EZ40@1|root,33SA7@2|Bacteria,1NUAM@1224|Proteobacteria
Cds size552
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186176.5765023-UTR-P-wetherbeei_contig19587:664..6821683186176.5765023-UTR-P-wetherbeei_contig19587:664..682Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19587 665..682 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186176.5846756-CDS-P-wetherbeei_contig19587:682..12341683186176.5846756-CDS-P-wetherbeei_contig19587:682..1234Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19587 683..1234 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19587.1.1prot_P-wetherbeei_contig19587.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19587 683..1234 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19587.1.1

>prot_P-wetherbeei_contig19587.1.1 ID=prot_P-wetherbeei_contig19587.1.1|Name=mRNA_P-wetherbeei_contig19587.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=184bp
MRALSHSLVAQKTGRPEDRERAGNLWSRVLSWQSESGLFVDSPGGLACPP
TYHAKFCAMLALAQEFTDQDESGQMRQALLRGLDSLAGLVSPGGVLIPYG
RSRHTLFGYAAAILALNWGARHADIKYAAPAHRLLKRLSAFQQGDGHIPC
LLGPGEDRKANWDVYINNPDYNSYAAALLLLTGN
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mRNA from alignment at P-wetherbeei_contig19587:665..1234+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19587.1.1 ID=mRNA_P-wetherbeei_contig19587.1.1|Name=mRNA_P-wetherbeei_contig19587.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=570bp|location=Sequence derived from alignment at P-wetherbeei_contig19587:665..1234+ (Phaeothamnion wetherbeei SAG_119_79)
TCCAACAACTGGGTGGCGATGCGTGCCCTAAGCCACAGCCTGGTGGCGCA GAAAACGGGGCGCCCCGAGGATCGAGAAAGAGCGGGGAACCTGTGGTCTA GAGTCCTCTCCTGGCAGAGCGAAAGCGGGCTATTTGTCGACTCACCCGGC GGTCTTGCCTGTCCTCCGACGTATCATGCAAAATTTTGCGCCATGCTGGC CCTCGCTCAAGAGTTCACAGACCAGGACGAGAGCGGACAAATGCGTCAAG CCCTTCTGAGAGGCCTTGACTCCCTTGCGGGCCTGGTCTCCCCGGGTGGC GTTCTGATCCCCTACGGTCGCTCGCGCCATACTCTATTTGGCTACGCAGC CGCGATACTCGCCCTGAACTGGGGAGCGCGTCACGCGGACATCAAGTATG CAGCACCCGCCCACCGACTCTTAAAGCGCTTGAGTGCATTTCAGCAAGGG GACGGGCACATCCCATGCCTGCTTGGACCTGGCGAGGACCGCAAGGCGAA TTGGGATGTATACATCAACAATCCGGACTACAACTCTTATGCCGCAGCTC TTTTGTTGCTAACTGGCAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19587:665..1234+

>mRNA_P-wetherbeei_contig19587.1.1 ID=mRNA_P-wetherbeei_contig19587.1.1|Name=mRNA_P-wetherbeei_contig19587.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig19587:665..1234+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTGCCCTAAGCCACAGCCTGGTGGCGCAGAAAACGGGGCGCCCCGA
GGATCGAGAAAGAGCGGGGAACCTGTGGTCTAGAGTCCTCTCCTGGCAGA
GCGAAAGCGGGCTATTTGTCGACTCACCCGGCGGTCTTGCCTGTCCTCCG
ACGTATCATGCAAAATTTTGCGCCATGCTGGCCCTCGCTCAAGAGTTCAC
AGACCAGGACGAGAGCGGACAAATGCGTCAAGCCCTTCTGAGAGGCCTTG
ACTCCCTTGCGGGCCTGGTCTCCCCGGGTGGCGTTCTGATCCCCTACGGT
CGCTCGCGCCATACTCTATTTGGCTACGCAGCCGCGATACTCGCCCTGAA
CTGGGGAGCGCGTCACGCGGACATCAAGTATGCAGCACCCGCCCACCGAC
TCTTAAAGCGCTTGAGTGCATTTCAGCAAGGGGACGGGCACATCCCATGC
CTGCTTGGACCTGGCGAGGACCGCAAGGCGAATTGGGATGTATACATCAA
CAATCCGGACTACAACTCTTATGCCGCAGCTCTTTTGTTGCTAACTGGCA
AC
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