mRNA_P-wetherbeei_contig19584.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19584.2.1
Unique NamemRNA_P-wetherbeei_contig19584.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19584.2.1 vs. uniprot
Match: A0A127EW03_9HYPH (Tricarboxylate transport protein n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127EW03_9HYPH)

HSP 1 Score: 64.3 bits (155), Expect = 5.940e-11
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    1 AALLLSGLPSSAQDYPNRPITMIVPFPAGGGVDVIGRIVAEKL 129
            A LLL G PS AQ++PNR +TM+VPF AGGG DV+GRIVA +L
Sbjct:   12 ALLLLPGAPSQAQNWPNRAVTMVVPFAAGGGTDVLGRIVARRL 54          
BLAST of mRNA_P-wetherbeei_contig19584.2.1 vs. uniprot
Match: A0A127ESM3_9HYPH (Extra-cytoplasmic solute receptor family protein n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127ESM3_9HYPH)

HSP 1 Score: 63.9 bits (154), Expect = 8.260e-11
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:    1 AALLLSGLPSSA-------QDYPNRPITMIVPFPAGGGVDVIGRIVAEKL 129
            AA LL G  S+A       QDYP +PITMIVPFPAGGGVDV+GRIV EKL
Sbjct:   10 AATLLLGAFSNALAPNAWAQDYPTKPITMIVPFPAGGGVDVVGRIVGEKL 59          
BLAST of mRNA_P-wetherbeei_contig19584.2.1 vs. uniprot
Match: X1JKP5_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1JKP5_9ZZZZ)

HSP 1 Score: 59.3 bits (142), Expect = 8.610e-11
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    1 AALLLSGLPSSAQDYPNRPITMIVPFPAGGGVDVIGRIVAEKL 129
            AA L SGL + AQDYP+RP+ +IVPFPAGG  D+I RIVA+KL
Sbjct:   14 AAALFSGL-ACAQDYPSRPVKIIVPFPAGGSNDIIARIVAQKL 55          
BLAST of mRNA_P-wetherbeei_contig19584.2.1 vs. uniprot
Match: A0A4D7AW25_9HYPH (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Phreatobacter stygius TaxID=1940610 RepID=A0A4D7AW25_9HYPH)

HSP 1 Score: 63.2 bits (152), Expect = 1.540e-10
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 1
Query:    4 ALLLSGLPSSA--QDYPNRPITMIVPFPAGGGVDVIGRIVAEKL 129
            A+LL GLP+SA  QD+P RPI +IVPFPAGG  D+IGR+VAEK+
Sbjct:   10 AVLLPGLPASAVAQDFPTRPIRLIVPFPAGGPADIIGRLVAEKM 53          
BLAST of mRNA_P-wetherbeei_contig19584.2.1 vs. uniprot
Match: A0A261V1R6_9BORD (Tat pathway signal protein n=1 Tax=Bordetella genomosp. 4 TaxID=463044 RepID=A0A261V1R6_9BORD)

HSP 1 Score: 63.2 bits (152), Expect = 1.580e-10
Identity = 28/43 (65.12%), Postives = 37/43 (86.05%), Query Frame = 1
Query:    1 AALLLSGLPSSAQDYPNRPITMIVPFPAGGGVDVIGRIVAEKL 129
            A L+   LP++AQ+YP+RPIT+IVPF AGGGVDV+ R++AEKL
Sbjct:   16 AGLVSHALPAAAQEYPSRPITLIVPFSAGGGVDVMARLLAEKL 58          
BLAST of mRNA_P-wetherbeei_contig19584.2.1 vs. uniprot
Match: A0A1Q7BW51_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium 13_2_20CM_2_64_7 TaxID=1803507 RepID=A0A1Q7BW51_9PROT)

HSP 1 Score: 61.2 bits (147), Expect = 7.500e-10
Identity = 24/35 (68.57%), Postives = 32/35 (91.43%), Query Frame = 1
Query:   25 PSSAQDYPNRPITMIVPFPAGGGVDVIGRIVAEKL 129
            P+ A+DYP+RP+T+I+PFPAGGGVD IGR++A KL
Sbjct:   20 PAVAEDYPSRPVTLIIPFPAGGGVDTIGRVIAAKL 54          
BLAST of mRNA_P-wetherbeei_contig19584.2.1 vs. uniprot
Match: A0A4Q5TTT6_9BURK (Uncharacterized protein (Fragment) n=1 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A4Q5TTT6_9BURK)

HSP 1 Score: 57.8 bits (138), Expect = 7.550e-10
Identity = 25/43 (58.14%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    1 AALLLSGLPSSAQDYPNRPITMIVPFPAGGGVDVIGRIVAEKL 129
            A+LLL+G  + AQ +P +PI ++VPFPAGG  D++GR+VAEKL
Sbjct:   14 ASLLLAGGAAHAQAWPAKPIRLVVPFPAGGSTDIVGRLVAEKL 56          
BLAST of mRNA_P-wetherbeei_contig19584.2.1 vs. uniprot
Match: A0A840SUR8_9RHOB (Tripartite-type tricarboxylate transporter receptor subunit TctC n=1 Tax=Amaricoccus macauensis TaxID=57001 RepID=A0A840SUR8_9RHOB)

HSP 1 Score: 61.2 bits (147), Expect = 7.590e-10
Identity = 24/43 (55.81%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    1 AALLLSGLPSSAQDYPNRPITMIVPFPAGGGVDVIGRIVAEKL 129
            AAL    LP++AQDYP +P+T+++PF AGG  DV+GRI+AE++
Sbjct:   12 AALAAVALPAAAQDYPTQPVTLVIPFAAGGSTDVVGRIIAERM 54          
BLAST of mRNA_P-wetherbeei_contig19584.2.1 vs. uniprot
Match: A0A6L8VL18_9RHOB (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Frigidibacter albus TaxID=1465486 RepID=A0A6L8VL18_9RHOB)

HSP 1 Score: 61.2 bits (147), Expect = 7.650e-10
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 1
Query:    1 AALLLSGLP--SSAQDYPNRPITMIVPFPAGGGVDVIGRIVAEKL 129
            AA+ L+ LP  + AQDYPNRPITMIVPFPAGG  D+  R+VA+K+
Sbjct:    8 AAMALTVLPFAAQAQDYPNRPITMIVPFPAGGATDIAARMVAQKM 52          
BLAST of mRNA_P-wetherbeei_contig19584.2.1 vs. uniprot
Match: A0A127ENJ9_9HYPH (Extra-cytoplasmic solute receptor n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127ENJ9_9HYPH)

HSP 1 Score: 61.2 bits (147), Expect = 7.670e-10
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 1
Query:    4 ALLLSGLPSSAQDYPNRPITMIVPFPAGGGVDVIGRIVAEKL 129
            AL  + +P++AQDYPNRPITMIVP+P GG  D IGRI+ + +
Sbjct:   14 ALSFAAMPAAAQDYPNRPITMIVPYPPGGATDTIGRIIQDSM 55          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19584.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A127EW03_9HYPH5.940e-1167.44Tricarboxylate transport protein n=1 Tax=Rhodoplan... [more]
A0A127ESM3_9HYPH8.260e-1168.00Extra-cytoplasmic solute receptor family protein n... [more]
X1JKP5_9ZZZZ8.610e-1167.44Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A4D7AW25_9HYPH1.540e-1068.18Tripartite tricarboxylate transporter substrate bi... [more]
A0A261V1R6_9BORD1.580e-1065.12Tat pathway signal protein n=1 Tax=Bordetella geno... [more]
A0A1Q7BW51_9PROT7.500e-1068.57Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A4Q5TTT6_9BURK7.550e-1058.14Uncharacterized protein (Fragment) n=1 Tax=Comamon... [more]
A0A840SUR8_9RHOB7.590e-1055.81Tripartite-type tricarboxylate transporter recepto... [more]
A0A6L8VL18_9RHOB7.650e-1064.44Tripartite tricarboxylate transporter substrate bi... [more]
A0A127ENJ9_9HYPH7.670e-1059.52Extra-cytoplasmic solute receptor n=1 Tax=Rhodopla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19584contigP-wetherbeei_contig19584:1136..1264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog936455.KI421499_gene214
PFAMsTctC
Model size129
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.25e-10
EggNOG OGsCOG3181@1|root,COG3181@2|Bacteria,1MU58@1224|Proteobacteria,2TQWK@28211|Alphaproteobacteria,3JV1H@41294|Bradyrhizobiaceae
DescriptionTripartite tricarboxylate transporter family receptor
Cds size129
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186176.5528002-CDS-P-wetherbeei_contig19584:1135..12641683186176.5528002-CDS-P-wetherbeei_contig19584:1135..1264Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19584 1136..1264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19584.2.1prot_P-wetherbeei_contig19584.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19584 1136..1264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19584.2.1

>prot_P-wetherbeei_contig19584.2.1 ID=prot_P-wetherbeei_contig19584.2.1|Name=mRNA_P-wetherbeei_contig19584.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=43bp
AALLLSGLPSSAQDYPNRPITMIVPFPAGGGVDVIGRIVAEKL
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mRNA from alignment at P-wetherbeei_contig19584:1136..1264+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19584.2.1 ID=mRNA_P-wetherbeei_contig19584.2.1|Name=mRNA_P-wetherbeei_contig19584.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=129bp|location=Sequence derived from alignment at P-wetherbeei_contig19584:1136..1264+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCGCTGCTGCTCTCGGGTCTGCCGTCGTCGGCGCAGGACTATCCCAA CCGCCCGATCACGATGATCGTGCCGTTCCCGGCGGGCGGCGGCGTCGATG TGATCGGCCGCATCGTCGCGGAAAAGCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19584:1136..1264+

>mRNA_P-wetherbeei_contig19584.2.1 ID=mRNA_P-wetherbeei_contig19584.2.1|Name=mRNA_P-wetherbeei_contig19584.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=129bp|location=Sequence derived from alignment at P-wetherbeei_contig19584:1136..1264+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCGCTGCTGCTCTCGGGTCTGCCGTCGTCGGCGCAGGACTATCCCAA
CCGCCCGATCACGATGATCGTGCCGTTCCCGGCGGGCGGCGGCGTCGATG
TGATCGGCCGCATCGTCGCGGAAAAGCTC
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