mRNA_P-wetherbeei_contig19571.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19571.1.1
Unique NamemRNA_P-wetherbeei_contig19571.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19571.1.1 vs. uniprot
Match: D7FN14_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN14_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.300e-9
Identity = 34/74 (45.95%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:    1 IGVRATFSLRGVKPHAFASEPKQSE--AAPPATG---------RYDYAYTGRHDDGSLPPPKTGGPHGILLRAL 189
            +GV+ATF ++G   H F S  K+    AA  A G         +YD  YTGRHD G+LP  KTGGPHG L++A+
Sbjct:   18 VGVKATFRVQGQAVHQFDSSGKKDSTPAAAAAVGEEGPVEGTDKYDCRYTGRHDHGTLPALKTGGPHGELVKAI 91
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19571.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FN14_ECTSI1.300e-945.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19571contigP-wetherbeei_contig19571:640..828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog115417.EPrPW00000018037
Model size189
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.44e-06
EggNOG OGs2CFGI@1|root,2SAM3@2759|Eukaryota,1MHQ2@121069|Pythiales
Descriptionfunction. Source PGD
Cds size189
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186176.4212363-CDS-P-wetherbeei_contig19571:639..8281683186176.4212363-CDS-P-wetherbeei_contig19571:639..828Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19571 640..828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19571.1.1prot_P-wetherbeei_contig19571.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19571 640..828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19571.1.1

>prot_P-wetherbeei_contig19571.1.1 ID=prot_P-wetherbeei_contig19571.1.1|Name=mRNA_P-wetherbeei_contig19571.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=63bp
IGVRATFSLRGVKPHAFASEPKQSEAAPPATGRYDYAYTGRHDDGSLPPP
KTGGPHGILLRAL
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mRNA from alignment at P-wetherbeei_contig19571:640..828-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19571.1.1 ID=mRNA_P-wetherbeei_contig19571.1.1|Name=mRNA_P-wetherbeei_contig19571.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig19571:640..828- (Phaeothamnion wetherbeei SAG_119_79)
ATTGGCGTGCGGGCTACTTTTTCCCTTCGCGGAGTTAAGCCCCATGCGTT
TGCGTCTGAGCCAAAGCAGTCGGAGGCCGCACCGCCGGCGACTGGCCGCT
ACGACTACGCATACACGGGCCGGCATGATGACGGCTCGCTGCCCCCGCCG
AAGACGGGCGGACCTCACGGCATCCTGCTACGCGCTTTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19571:640..828-

>mRNA_P-wetherbeei_contig19571.1.1 ID=mRNA_P-wetherbeei_contig19571.1.1|Name=mRNA_P-wetherbeei_contig19571.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig19571:640..828- (Phaeothamnion wetherbeei SAG_119_79)
ATTGGCGTGCGGGCTACTTTTTCCCTTCGCGGAGTTAAGCCCCATGCGTT
TGCGTCTGAGCCAAAGCAGTCGGAGGCCGCACCGCCGGCGACTGGCCGCT
ACGACTACGCATACACGGGCCGGCATGATGACGGCTCGCTGCCCCCGCCG
AAGACGGGCGGACCTCACGGCATCCTGCTACGCGCTTTG
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