mRNA_P-wetherbeei_contig19549.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig19549.1.1 vs. uniprot
Match: A0A2N2TA64_9PROT (HTH tetR-type domain-containing protein n=1 Tax=Betaproteobacteria bacterium HGW-Betaproteobacteria-16 TaxID=2013707 RepID=A0A2N2TA64_9PROT) HSP 1 Score: 339 bits (869), Expect = 1.200e-115 Identity = 170/196 (86.73%), Postives = 183/196 (93.37%), Query Frame = 1
Query: 211 MTRVRSNDYELKKQVILDSAVVLIAQKGFDGATMSDVAAACGASKSHLYHYFSSKEDLLYAIVKEHITDQVAVLSAIVQEPRPAAERFTRFVGAFVQEGAKSRNHHLVLMNDIKFLPPVQREDVRKMEQELMQLMVNLLHEINPERMARAKAQSPYALLLFGMVIWTFTWYEKDGPISPAELADHISALFLDGFRA 798
MTR R+NDY+LKKQVILD AV LIAQKGFDGATMSDVAAACGASKSHLYHYF SKEDLL+AIVKEHIT+QVA LSAIV+EPRPA+ERFTRFVGAFVQEGAKSRNHHLVLMNDIKFLP VQRE+VRK+EQELM+LMV+LLHEINP+RMA AK SPYALLLFGMVIWTFTWYEK+G ISP ELA+ IS LFLDGFRA
Sbjct: 1 MTRERANDYDLKKQVILDQAVALIAQKGFDGATMSDVAAACGASKSHLYHYFPSKEDLLFAIVKEHITEQVAGLSAIVREPRPASERFTRFVGAFVQEGAKSRNHHLVLMNDIKFLPSVQREEVRKLEQELMRLMVSLLHEINPDRMAPAKVHSPYALLLFGMVIWTFTWYEKNGAISPEELAERISELFLDGFRA 196
BLAST of mRNA_P-wetherbeei_contig19549.1.1 vs. uniprot
Match: UPI000825E86B (TetR/AcrR family transcriptional regulator n=1 Tax=Hydrogenophaga palleronii TaxID=65655 RepID=UPI000825E86B) HSP 1 Score: 332 bits (852), Expect = 4.650e-113 Identity = 168/195 (86.15%), Postives = 176/195 (90.26%), Query Frame = 1
Query: 211 MTRVRSNDYELKKQVILDSAVVLIAQKGFDGATMSDVAAACGASKSHLYHYFSSKEDLLYAIVKEHITDQVAVLSAIVQEPRPAAERFTRFVGAFVQEGAKSRNHHLVLMNDIKFLPPVQREDVRKMEQELMQLMVNLLHEINPERMARAKAQSPYALLLFGMVIWTFTWYEKDGPISPAELADHISALFLDGFR 795
MTRVR+NDYE KKQVILDSAV LIAQKGFD ATMSDVAAACGASKSHLYHYF+SKEDLLY IVKEHIT+QVAVL+AIV EP P ERF RFVGAFVQEGAKSRNHHLVLMNDIKFLPP QREDVRK+EQELM LMV+LL EINPERMA+AK S YALLLFGMVIWTFTWYEK G ISPAELA+ IS LFLDGFR
Sbjct: 1 MTRVRANDYEFKKQVILDSAVALIAQKGFDAATMSDVAAACGASKSHLYHYFASKEDLLYVIVKEHITEQVAVLTAIVNEPTPPGERFNRFVGAFVQEGAKSRNHHLVLMNDIKFLPPGQREDVRKLEQELMSLMVSLLREINPERMAQAKVNSAYALLLFGMVIWTFTWYEKTGAISPAELAERISDLFLDGFR 195
BLAST of mRNA_P-wetherbeei_contig19549.1.1 vs. uniprot
Match: A0A4Q5PBH4_9BURK (TetR/AcrR family transcriptional regulator n=1 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A4Q5PBH4_9BURK) HSP 1 Score: 322 bits (824), Expect = 8.170e-109 Identity = 163/195 (83.59%), Postives = 172/195 (88.21%), Query Frame = 1
Query: 211 MTRVRSNDYELKKQVILDSAVVLIAQKGFDGATMSDVAAACGASKSHLYHYFSSKEDLLYAIVKEHITDQVAVLSAIVQEPRPAAERFTRFVGAFVQEGAKSRNHHLVLMNDIKFLPPVQREDVRKMEQELMQLMVNLLHEINPERMARAKAQSPYALLLFGMVIWTFTWYEKDGPISPAELADHISALFLDGFR 795
MTR R+ DYE KK+ ILD AV LIA KGFDGATM DVA ACG SKSHLYHYF SKEDLLYAIV+EHIT QVAVLSAIV+EPRPA ERFTRFVGAFVQ+GAKSR+HHLVLMNDIKFLP QREDVRKME ELMQLMV LL EINPE+MA K QSPYALLLFGMVIWTFTWYEK+GPISPAELAD IS LFL+GFR
Sbjct: 1 MTRARAGDYEDKKRSILDRAVTLIASKGFDGATMIDVANACGTSKSHLYHYFPSKEDLLYAIVREHITGQVAVLSAIVREPRPATERFTRFVGAFVQQGAKSRSHHLVLMNDIKFLPTAQREDVRKMELELMQLMVGLLREINPEKMASVKVQSPYALLLFGMVIWTFTWYEKNGPISPAELADRISDLFLNGFR 195
BLAST of mRNA_P-wetherbeei_contig19549.1.1 vs. uniprot
Match: UPI00198FFBC2 (TetR/AcrR family transcriptional regulator n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=UPI00198FFBC2) HSP 1 Score: 314 bits (805), Expect = 6.570e-106 Identity = 159/196 (81.12%), Postives = 170/196 (86.73%), Query Frame = 1
Query: 211 MTRVRSNDYELKKQVILDSAVVLIAQKGFDGATMSDVAAACGASKSHLYHYFSSKEDLLYAIVKEHITDQVAVLSAIVQEPRPAAERFTRFVGAFVQEGAKSRNHHLVLMNDIKFLPPVQREDVRKMEQELMQLMVNLLHEINPERMARAKAQSPYALLLFGMVIWTFTWYEKDGPISPAELADHISALFLDGFRA 798
MTR R++DYE KK+ ILD AV LIA KGFD ATM DVA ACG SKSHLYHYF SKEDLLYAIVK HITDQV VLSAIV+EPRPA ERF RFVGAFV+EGAKSRNHHLVLMNDIKFLP QREDVRKMEQ LMQLMV LL EINPE+M+ K QS YALLLFGMVIWTFTWYEK+GPISPAELA+ IS LFL+GFR+
Sbjct: 1 MTRARADDYEHKKRAILDRAVALIASKGFDHATMIDVANACGTSKSHLYHYFPSKEDLLYAIVKAHITDQVTVLSAIVREPRPAVERFARFVGAFVREGAKSRNHHLVLMNDIKFLPTAQREDVRKMEQALMQLMVGLLREINPEKMSAVKVQSSYALLLFGMVIWTFTWYEKNGPISPAELAEKISDLFLNGFRS 196
BLAST of mRNA_P-wetherbeei_contig19549.1.1 vs. uniprot
Match: A0A2P8KAW2_9BURK (HTH tetR-type domain-containing protein n=2 Tax=Variovorax sp. WS11 TaxID=1105204 RepID=A0A2P8KAW2_9BURK) HSP 1 Score: 265 bits (677), Expect = 5.100e-85 Identity = 150/269 (55.76%), Postives = 187/269 (69.52%), Query Frame = 1
Query: 1 MAPVHPCCRAAKASSTPACPAP-MTSNVSVLSMLSLCQVMGIGLI---VRLVGLI*KGSARHARSQYKFRGGIAMTRVRSNDYELKKQVILDSAVVLIAQKGFDGATMSDVAAACGASKSHLYHYFSSKEDLLYAIVKEHITDQVAVLSAIVQEPRPAAERFTRFVGAFVQEGAKSRNHHLVLMNDIKFLPPVQREDVRKMEQELMQLMVNLLHEINPERMARAKAQSPYALLLFGMVIWTFTWYEKDGPISPAELADHISALFLDGFR 795
+ P PC RA A+S PA PAP +TS SV+SM+S G +I R + G A A + R G MTRVR+NDYE K+ VIL A LIA+KGFD ATM DVA CG SKSHLYHYF+SKEDLLYAIV +HIT Q A L IV P PA ERF +F+ +FVQ ++SR+ H++LMND+KFLP QR+ VRK+E E+ LM LL EINP MA+ + ++PYALLL+GM+IWTFTWY ++GP++PAELA IS LF++GFR
Sbjct: 2 IGPAQPCWRAETANSLPAWPAPTITSADSVVSMVSPTST-GFRIIYSPTRRFNYMSDGRAMQAIPSH-VRHGRQMTRVRANDYEDKRNVILRKAAALIARKGFDVATMMDVAEGCGTSKSHLYHYFTSKEDLLYAIVHDHITRQAADLIRIVHLPLPAEERFGQFIDSFVQGASESRDEHIMLMNDLKFLPRGQRDHVRKLEVEMTGLMEGLLREINPRLMAQERVETPYALLLYGMMIWTFTWYRRNGPMAPAELAHRISGLFVNGFR 268
BLAST of mRNA_P-wetherbeei_contig19549.1.1 vs. uniprot
Match: A0A1F4EB58_9BURK (HTH tetR-type domain-containing protein n=1 Tax=Burkholderiales bacterium RIFCSPHIGHO2_01_FULL_64_960 TaxID=1797553 RepID=A0A1F4EB58_9BURK) HSP 1 Score: 257 bits (657), Expect = 2.390e-83 Identity = 126/196 (64.29%), Postives = 152/196 (77.55%), Query Frame = 1
Query: 211 MTRVRSNDYELKKQVILDSAVVLIAQKGFDGATMSDVAAACGASKSHLYHYFSSKEDLLYAIVKEHITDQVAVLSAIVQEPRPAAERFTRFVGAFVQEGAKSRNHHLVLMNDIKFLPPVQREDVRKMEQELMQLMVNLLHEINPERMARAKAQSPYALLLFGMVIWTFTWYEKDGPISPAELADHISALFLDGFRA 798
MTRVR++DYE K+Q ILD A LIA+KGFD ATM DVA ACG SKSHLYHYF SKEDLLYAIV+EHIT Q A L+ IV +P A ERF +F+ AF+Q A+SRN HL+LMNDIKFLP Q + +R+ME +L +LM LL EINPE MA + Q P++LLLFGM+IWTF+WY + G I+P ELA HIS LF+ GF+A
Sbjct: 1 MTRVRADDYEAKRQTILDKAATLIARKGFDVATMMDVAKACGTSKSHLYHYFPSKEDLLYAIVQEHITTQAAELTRIVAQPLRAEERFAQFIDAFMQGAARSRNEHLILMNDIKFLPKAQLDQIRRMEADLTELMEGLLREINPEFMAEERLQKPFSLLLFGMMIWTFSWYRRTGSITPHELAHHISTLFIHGFKA 196
BLAST of mRNA_P-wetherbeei_contig19549.1.1 vs. uniprot
Match: A0A1M3BYC6_9BURK (HTH tetR-type domain-containing protein n=1 Tax=Burkholderiales bacterium 66-5 TaxID=1895728 RepID=A0A1M3BYC6_9BURK) HSP 1 Score: 257 bits (656), Expect = 3.390e-83 Identity = 128/196 (65.31%), Postives = 151/196 (77.04%), Query Frame = 1
Query: 211 MTRVRSNDYELKKQVILDSAVVLIAQKGFDGATMSDVAAACGASKSHLYHYFSSKEDLLYAIVKEHITDQVAVLSAIVQEPRPAAERFTRFVGAFVQEGAKSRNHHLVLMNDIKFLPPVQREDVRKMEQELMQLMVNLLHEINPERMARAKAQSPYALLLFGMVIWTFTWYEKDGPISPAELADHISALFLDGFRA 798
MTRVR++DYE K+Q ILD A LIA+KGFD ATM DVA ACGASKSHLYHYFSSKEDLL+AIV EHIT Q A L+ IV +P PA ERF +FV F+Q A+SRN HL+LMNDIKFLP Q + +R++E L +LM +LL EINPE MA Q PYALLLFGM+IWTF+WY + G I+P ELA IS LF+ GF+A
Sbjct: 1 MTRVRADDYEAKRQTILDKAAALIARKGFDVATMLDVAKACGASKSHLYHYFSSKEDLLFAIVHEHITAQAAELNRIVAQPLPAEERFAQFVDTFMQGAARSRNEHLILMNDIKFLPKAQLDQIRRLEANLTELMEDLLREINPEFMAEEHLQKPYALLLFGMMIWTFSWYRRTGSIAPHELAQRISTLFVHGFKA 196
BLAST of mRNA_P-wetherbeei_contig19549.1.1 vs. uniprot
Match: A0A0Q7LJE1_9BURK (HTH tetR-type domain-containing protein n=3 Tax=unclassified Variovorax TaxID=663243 RepID=A0A0Q7LJE1_9BURK) HSP 1 Score: 253 bits (647), Expect = 9.310e-82 Identity = 123/203 (60.59%), Postives = 151/203 (74.38%), Query Frame = 1
Query: 211 MTRVRSNDYELKKQVILDSAVVLIAQKGFDGATMSDVAAACGASKSHLYHYFSSKEDLLYAIVKEHITDQVAVLSAIVQEPRPAAERFTRFVGAFVQEGAKSRNHHLVLMNDIKFLPPVQREDVRKMEQELMQLMVNLLHEINPERMARAKAQSPYALLLFGMVIWTFTWYEKDGPISPAELADHISALFLDGFRAEHVTPAA 819
MTRVR++DY+ K+Q ILD A L A+KGF+G+TM +VA ACGASKSHLYHYF+ KEDLL+ IV+ HIT Q+A L +V + PA ERF R+V FV GA SRN HLVLMNDIKFLP QR +VRK+E+ ++ L+V +LHEINPE M + PYA+LLFGM+IWTFTWYEK G I P ELA IS LF+ GF+ + P A
Sbjct: 1 MTRVRADDYDDKRQSILDQAAALFARKGFEGSTMIEVAQACGASKSHLYHYFARKEDLLFEIVRVHITAQLAELETVVTQALPAEERFNRYVETFVARGANSRNEHLVLMNDIKFLPDAQRREVRKLEKRIVDLLVGVLHEINPELMPARSPRGPYAMLLFGMIIWTFTWYEKSGAIPPRELAARISQLFVHGFKGQRFVPPA 203
BLAST of mRNA_P-wetherbeei_contig19549.1.1 vs. uniprot
Match: UPI001551CB9F (TetR/AcrR family transcriptional regulator n=1 Tax=Caenimonas soli TaxID=2735555 RepID=UPI001551CB9F) HSP 1 Score: 253 bits (646), Expect = 1.040e-81 Identity = 125/195 (64.10%), Postives = 151/195 (77.44%), Query Frame = 1
Query: 211 MTRVRSNDYELKKQVILDSAVVLIAQKGFDGATMSDVAAACGASKSHLYHYFSSKEDLLYAIVKEHITDQVAVLSAIVQEPRPAAERFTRFVGAFVQEGAKSRNHHLVLMNDIKFLPPVQREDVRKMEQELMQLMVNLLHEINPERMARAKAQSPYALLLFGMVIWTFTWYEKDGPISPAELADHISALFLDGFR 795
MTRVR++DY+ KKQ+IL A LIA+KGFD ATM DVA ACG SKSHLYHYF+SKE+LLYAIV EHIT Q L+ IV +P PA ERFT+FV +FVQ A+SRN HL+LMND+KFLP QRE +RK+E E+ +LM LL EINP+ M + Q PYALLLFGM+IWTF+WY + G I+P ELA IS LF+ GF+
Sbjct: 1 MTRVRADDYDDKKQIILGKAAALIARKGFDMATMMDVAKACGTSKSHLYHYFASKEELLYAIVHEHITRQATDLARIVAQPLPAEERFTQFVDSFVQGAARSRNEHLMLMNDLKFLPTGQREHIRKLEIEMTELMEQLLREINPKLMTEERVQKPYALLLFGMMIWTFSWYRRSGEITPRELAQRISELFVHGFK 195
BLAST of mRNA_P-wetherbeei_contig19549.1.1 vs. uniprot
Match: UPI0006547971 (TetR/AcrR family transcriptional regulator n=1 Tax=Caenimonas sp. SL110 TaxID=1450524 RepID=UPI0006547971) HSP 1 Score: 251 bits (641), Expect = 8.650e-81 Identity = 124/203 (61.08%), Postives = 154/203 (75.86%), Query Frame = 1
Query: 211 MTRVRSNDYELKKQVILDSAVVLIAQKGFDGATMSDVAAACGASKSHLYHYFSSKEDLLYAIVKEHITDQVAVLSAIVQEPRPAAERFTRFVGAFVQEGAKSRNHHLVLMNDIKFLPPVQREDVRKMEQELMQLMVNLLHEINPERMARAKAQSPYALLLFGMVIWTFTWYEKDGPISPAELADHISALFLDGFRAEHVTPAA 819
MTRVR++DY+ K+ IL A LIA+KGFD ATM DVA ACG SKSHLYHYF SKEDLLYAIV EHIT Q A L+ I+ P PA ERF F+ +FVQ A+SR+ H++LMND+KFLP QRE VRK+E E+ L+ LL EINP+ M++ K ++PYALLL+GM+IWTFTWY ++G I+PAELA IS LF++GFR + P A
Sbjct: 1 MTRVRAHDYDDKRNAILGKAATLIARKGFDVATMMDVAQACGTSKSHLYHYFPSKEDLLYAIVHEHITQQAADLARIIHLPLPAEERFGLFIDSFVQGAARSRDEHIMLMNDLKFLPRGQREHVRKLEVEMTSLLEGLLREINPQLMSQQKLETPYALLLYGMMIWTFTWYRRNGSIAPAELAQRISDLFINGFRGAQLLPGA 203 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19549.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig19549.1.1 >prot_P-wetherbeei_contig19549.1.1 ID=prot_P-wetherbeei_contig19549.1.1|Name=mRNA_P-wetherbeei_contig19549.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=204bp MTRVRSNDYELKKQVILDSAVVLIAQKGFDGATMSDVAAACGASKSHLYHback to top mRNA from alignment at P-wetherbeei_contig19549:224..1045- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig19549.1.1 ID=mRNA_P-wetherbeei_contig19549.1.1|Name=mRNA_P-wetherbeei_contig19549.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=822bp|location=Sequence derived from alignment at P-wetherbeei_contig19549:224..1045- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig19549:224..1045- >mRNA_P-wetherbeei_contig19549.1.1 ID=mRNA_P-wetherbeei_contig19549.1.1|Name=mRNA_P-wetherbeei_contig19549.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=612bp|location=Sequence derived from alignment at P-wetherbeei_contig19549:224..1045- (Phaeothamnion wetherbeei SAG_119_79)back to top |