mRNA_P-wetherbeei_contig19545.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19545.2.1
Unique NamemRNA_P-wetherbeei_contig19545.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19545.2.1 vs. uniprot
Match: A0A539E1M1_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539E1M1_9ACTN)

HSP 1 Score: 495 bits (1275), Expect = 3.830e-171
Identity = 272/379 (71.77%), Postives = 286/379 (75.46%), Query Frame = -1
Query:   25 VARLVPEDLDADSGFQFDGDRSALDSGWCELASERGEFLAGPTGEGNVGGGDDRCLDFGLSCRESTRSAGAEGAAATPLSHEGGGETGGERDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR--DDDGRPFGGCGYVGRCGRRGMKLGRRRRWEIDLGLGWKWRHRGRWREWWIADRGEVDRVAGEDQAGVPAGEGVGVDDQVHVVSDLGVGRRQRFAVSAIEPLGADVPDVVAGFDDHGLSRQPAG--AGGGRRLVAGGLSTRREHGHALREGTSLIHAAIWHRSADVQCEDLVAGTVESVREHAGGDRVGGVPASSDDLADQIGMFTVLVLNRVASVVRDDRRGGSALGLRGARHAGESGGGEH 1149
            +ARLVPEDLDADSGFQFDG+RSALD  WCELASERGEFLAGPTGEGNVGGGDDR LDFGLS RESTRSA AEG+A+ PLSHEGGGE  GERDG                                            DDDGR F GCG+VGR GRRGM LG R RW +DLGLGWKWR RGRWREW IAD GEVDRVAG+DQA   AGEGVGVDDQ+HVV DLGVGRRQRFAVSAIEPLGA+VPDVVAGFDDHGL+R+PAG  AG GR LVAGGLS RREHGHAL EG  L+HA    RSADVQ EDLV+G VESVRE  GGDRVGGV AS +DLADQIG FTVLVLNRV SVV  D RG SA GLRGA HAGE GGGEH
Sbjct:    1 MARLVPEDLDADSGFQFDGERSALDRRWCELASERGEFLAGPTGEGNVGGGDDRGLDFGLSFRESTRSADAEGSASAPLSHEGGGEPRGERDGSGHSGKGDERPVRGCVVVRDRGCGLLIAGRGVSGMPGRHRGAGLDDDGRRFSGCGHVGRGGRRGMSLGGRWRWVVDLGLGWKWRRRGRWREWRIADSGEVDRVAGKDQARATAGEGVGVDDQMHVVGDLGVGRRQRFAVSAIEPLGAEVPDVVAGFDDHGLAREPAGVAAGRGRGLVAGGLSARREHGHALGEGPPLVHATAGSRSADVQFEDLVSGAVESVREQPGGDRVGGVAASRNDLADQIGTFTVLVLNRVVSVVHGDCRGRSAGGLRGAMHAGERGGGEH 379          
BLAST of mRNA_P-wetherbeei_contig19545.2.1 vs. uniprot
Match: A0A6J7A483_9ZZZZ (Unannotated protein n=2 Tax=root TaxID=1 RepID=A0A6J7A483_9ZZZZ)

HSP 1 Score: 479 bits (1232), Expect = 2.710e-159
Identity = 261/340 (76.76%), Postives = 272/340 (80.00%), Query Frame = 1
Query:  271 MPDGGMYQGGAFPEGMTVLTPRGQSASDQ--PPAATSAGWLPGETVVVEPGDNVWDISAERLDRADGETLTPTNAEIADHMHLVIDTNTFPSGNPSLIFPGDTINFPAIGNPPLAPPTPVPPLPPQPEIDLPAPPATEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTPGTEQTA--LTDNDASPDRSLVTLAGVTGTVALASGLATALVRQRRRRRALGTGRPSRLSTRQAEVETAIVAASDVPFTRWAGEELAALARQLTPTAIKGAPIAVELEPGVGIEILWDQPCHTAPIPWEATDGGWSWRVHYDPDEPTPLAEWPSPIPALVTVGTR 1278
            MPDGG YQGGAFPEGMTVLTP  +S   +  P  +   GWLPGETVVVEPGDNVWD+SAERLDRADGET+TPTNAEIADHMHLVIDTNTFPSGNPSLIFPGDTINFPAIG+PPLA          QP  DLP PP TE     X                          XXX      QTA  +TD+D SPDRSLVTLAGVTGTVALASGL TALVRQRRRRRALGTGRPSRLSTRQAEVETAIVAASDVPFTRWAG+ELAALARQLTPTAIKGAP+AVELEPG+GIEILWDQPCHTAPIPWEATDGGWSWRVHYDPDEPTPLAEWPSPIPALVTVGTR
Sbjct:    1 MPDGGTYQGGAFPEGMTVLTPGERSLGGEGVPAVSGDVGWLPGETVVVEPGDNVWDLSAERLDRADGETVTPTNAEIADHMHLVIDTNTFPSGNPSLIFPGDTINFPAIGSPPLAXXXXXXXXXXQPATDLPTPPTTEAHPPPXAPPDVPTHTEAPTIVIETGTTVPPRHXXXXXXXXXQTAPAVTDHDTSPDRSLVTLAGVTGTVALASGLTTALVRQRRRRRALGTGRPSRLSTRQAEVETAIVAASDVPFTRWAGQELAALARQLTPTAIKGAPLAVELEPGIGIEILWDQPCHTAPIPWEATDGGWSWRVHYDPDEPTPLAEWPSPIPALVTVGTR 340          
BLAST of mRNA_P-wetherbeei_contig19545.2.1 vs. uniprot
Match: A0A2E0RWJ1_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RWJ1_9ACTN)

HSP 1 Score: 256 bits (655), Expect = 1.670e-76
Identity = 184/431 (42.69%), Postives = 233/431 (54.06%), Query Frame = 1
Query:    1 ITTTSTLA-VFPSSALSSMPGSTQAKGRPAATVV---ANDARHSIQNEHSEHPDLVSEIVARRRDTPYSIAARMFPDRLDGARDEILALNVGRPMPDGGMYQGGAFPEGMTVLTPR-------GQSASDQPPAATSAGW---LPGETVVVEPGDNVWDISAERLDRADGETLTPTNAEIADHMHLVIDTNTFPSGNPSLIFPGDTINFPAIGNPPL--------APPTPVPPLPPQ----------PEIDLPAPPATEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTPGTEQTALTDND----ASPDRSLVTLAGVTGTVALASGLATALVRQRRRRRALGTGRPSRLSTRQAEVETAIVAASDVPFTRWAGEELAALARQLTPTAIKGAPIAVELEPGVGIEILWDQPCHTAPIPWEATDGG 1185
            +TTTSTLA  +P       P +  +   P ATVV   AND   ++ +  S     V+E +A  RDTPY+IAA+ F DR+D AR+EI+ALN GRP PDG M++GG+FPEGM VL P          S    P +A    W   LP ET+VVEPGDNVW+++ ERLD  DG   +P +++IA H+  VI +NTF S +P+LIFPG+TI+FPAIG PP         A  T +P   P+          PE+   +PP T+                                   T   +E   +T  D    A  D +   L GVTG V LAS LA A+  +RRRRRA G    +      A  E AIVAASDVPF RW  +ELAALAR L P   +  P+AVEL+   G+E+LWDQP   AP PWEATDGG
Sbjct:  128 VTTTSTLAFAYP-------PAAAPSASHPTATVVDDEANDDSVTLTSRPS-----VAEHIAGPRDTPYAIAAQRFSDRIDEAREEIVALNHGRPTPDGHMWRGGSFPEGMQVLIPMEAPDNEDSPSGGPGPTSAAEGDWPAHLPAETIVVEPGDNVWNLAKERLDTVDGPETSPNDSDIAHHVDHVISSNTFTSSDPNLIFPGETIDFPAIGTPPANGARPSSGANETLIPADQPEQTNSDSDESEPEVAT-SPPLTDMATTEHTPADPATSVAAEAAAESEAAPATLPPP--TARPSEDPTITSTDLTDVAPEDEAPSPLLGVTGAVVLASALAAAMAWERRRRRARGVRTNN---ADDAAAELAIVAASDVPFVRWVAQELAALARSLDPDEHEAVPLAVELDESEGVEVLWDQPVLDAPPPWEATDGG 540          
BLAST of mRNA_P-wetherbeei_contig19545.2.1 vs. uniprot
Match: A0A524B2Q9_9ACTN (LysM domain-containing protein n=1 Tax=Acidimicrobiales bacterium mtb01 TaxID=1967499 RepID=A0A524B2Q9_9ACTN)

HSP 1 Score: 147 bits (372), Expect = 8.500e-35
Identity = 143/367 (38.96%), Postives = 180/367 (49.05%), Query Frame = 1
Query:  226 DGARD-EILALNVGRPMP-DGGMYQGGAFPEGMTVLTPRGQSASDQPPAATSAGWLPGETVVVEPGDNVWDISAERLDRADGETLTPTNA-EIADHMHLVIDTNTFPSGNPSLIFPGDTINFPAIGNPPLAPPTPVPPLPPQPEIDLPAPP-------------ATEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTPGTEQTALTDNDASPDRSLVTLAGVTGTVALASGLATALVRQRRRRRALGTGRPSRLSTRQAEVETAIVAASDVPFTRWAGEELAALARQLTPTAIKGAPIAVELEPGVGIEILWDQPCHTAPIPWEATDGGWSWRVHYDPDEPTPLAEWPSPIPALVTVGTR 1278
            DG+R  EI+ LN     P D    Q    P    V   R  S +    +  S  +L  E V V  GD +WD+S +R++ A   T  P +  E  +++  VI  N     NP+LIFPG+   FP IG PP+       P+ P  E   P P               T               XXXXXXXXXXXXXXXXXXX    P              D ++  LAG+TG   L++G   A  RQ+RRR A G     R++    E E A+V   DV F RWA  ELA LAR+L PT ++G P+AVE+    G+E+LW+ P   AP PWEA DGGWSWR+ YD D   P     +PIP LVT GTR
Sbjct:  174 DGSRSSEIIDLNWQLRSPRDVRTGQVLRLPADARVPADRAPSNAAPAQSQESDTYLAPEVVTVVRGDTLWDLSEDRIEEA---THAPASGRETMEYLDEVIAANPETIENPNLIFPGEQFVFPEIGEPPV-------PIDPVQEGTPPTPXXXXXXXXXXXXXSTTVAQGTQVSLPVPTTAXXXXXXXXXXXXXXXXXXXPAVAPSFGPAGAVRGG---DSAVPWLAGLTGASVLSAGALAAFRRQQRRRAARGERTIRRVAAAHLETERALVRVGDVSFVRWANHELAELARELGPTDVQGTPVAVEMSAEHGLELLWEVPNPVAPRPWEAADGGWSWRLVYDADLHLPANPETAPIPGLVTFGTR 527          
BLAST of mRNA_P-wetherbeei_contig19545.2.1 vs. uniprot
Match: A0A349BBI3_9ACTN (LysM domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349BBI3_9ACTN)

HSP 1 Score: 138 bits (347), Expect = 1.550e-31
Identity = 75/143 (52.45%), Postives = 91/143 (63.64%), Query Frame = 1
Query:  850 TLAGVTGTVALASGLATALVRQRRRRRALGTGRPSRLSTRQAEVETAIVAASDVPFTRWAGEELAALARQLTPTAIKGAPIAVELEPGVGIEILWDQPCHTAPIPWEATDGGWSWRVHYDPDEPTPLAEWPSPIPALVTVGTR 1278
            TLAGVTG  ALA GLA  +   RRRR   G  R   L    AE E+A+VAA+D+P  RWAG+ELA L   L    I G P+AVE+    GIE+LW+ P   AP PW+A DGGW+WR+ YDP+   P +E  S IPALVT+G R
Sbjct:  383 TLAGVTG--ALAVGLALRIALLRRRRSVRGARRSRALPQALAETESAVVAAADIPLVRWAGQELAQLIANLKRHRITGGPVAVEISEEAGIELLWETPAPDAPTPWQAADGGWAWRLPYDPEADVPASELSSGIPALVTIGER 523          
BLAST of mRNA_P-wetherbeei_contig19545.2.1 vs. uniprot
Match: A0A3C2B7U3_9ACTN (LysM domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B7U3_9ACTN)

HSP 1 Score: 121 bits (304), Expect = 5.730e-26
Identity = 56/103 (54.37%), Postives = 72/103 (69.90%), Query Frame = 1
Query:  973 AEVETAIVAASDVPFTRWAGEELAALARQLTPTAIKGAPIAVELEPGVGIEILWDQPCHTAPI-PWEATDGGWSWRVHYDPDEPTPLAEWPSPIPALVTVGTR 1278
            ++ E A+VAA+DVP  RWAG+++A L R L P  + GAP+AVEL    GIEILWD P H+  +  W A DGGW+WR+ YDP+ P P  E P+ IPALVT+G R
Sbjct:  444 SDAEIAVVAAADVPLVRWAGQQMATLIRDLDPRKVTGAPLAVELSEEAGIEILWDAPQHSPTVGAWRAADGGWAWRLDYDPESPVPPDELPAGIPALVTIGQR 546          
BLAST of mRNA_P-wetherbeei_contig19545.2.1 vs. uniprot
Match: UPI0003460563 (LysM peptidoglycan-binding domain-containing protein n=1 Tax=Ilumatobacter nonamiensis TaxID=467093 RepID=UPI0003460563)

HSP 1 Score: 94.0 bits (232), Expect = 8.200e-17
Identity = 106/409 (25.92%), Postives = 160/409 (39.12%), Query Frame = 1
Query:  166 VARRRDTPYSIAARMFPDRLDGAR-DEILALNVG-RPMPDGGMYQGGAFPEGMTVLTPRGQSASDQPPAATSAGWLPGETVVVEPGDNVWDISAERLDRADGETLTPTNAEIADHMHLVIDTNTFPSGNPSLIFPGDTINFPAIGNPPLAPPTPVPPLPPQPEIDLPAPPATEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTPGTEQTALTDNDASPDRSLVTLAGVTGTVALASGLATALVRQR------------------------------------RRRRALGTGRPSRLSTRQAEVETAIVAASDVPFTRWAGEELAALARQLTPTAIKGAPIAVELEPGVGIEILWDQPCHTAPIPWEATDGGWSWRVHYDPDEPTPLAEWPSPIPALVTVGTR 1278
            V +  DT + +A     D   GAR  EI+ LN   R   D    Q    P    + + R      +   A+ + +L   ++V+EPGD +WD+S ERL+ A+     P  A++  ++  VI+ N     +P LI+PG+    P IG    A P+P P           AP A                                      TP  E T   +ND +P  ++ T          ++G+  ++   +                                    +R  +L     +  +     +E+ +V A+DVP   WA  EL++L        + G P+AVE+    GIE+LW      AP PWE+TDGGW+WR  YD D         +P+P LVTVG R
Sbjct:  169 VVQTGDTLWKVAETALGD---GARCAEIIDLNADIRSARDVRSGQRLLLPADADIPSDRQGGPDAKAIVASESAFLEETSIVIEPGDTLWDLSTERLENANSNP--PAAADVVAYVQEVIERNPDVIEDPDLIYPGEVFVMPTIGT---ARPSPAP-----------APDAEPGLAEVDAEVVIVAPVVEQ-----------------VTP--EPTPHVENDPTPAPNVETPYQRDAAPTASNGVGASVAPDQAEEAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRLASLRGVHAAEQNPDDEALESFLVRAADVPLLTWARHELSSLFDLPELGPVSGVPVAVEISAVRGIEMLWSSQNRGAPRPWESTDGGWTWRATYDEDIEIHDMVDSTPLPGLVTVGAR 539          
BLAST of mRNA_P-wetherbeei_contig19545.2.1 vs. uniprot
Match: A0A7C4TJ52_9ACTN (LysM peptidoglycan-binding domain-containing protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7C4TJ52_9ACTN)

HSP 1 Score: 80.9 bits (198), Expect = 1.400e-12
Identity = 140/391 (35.81%), Postives = 176/391 (45.01%), Query Frame = 1
Query:  163 IVARRRDTPYSIAARMFPDRLDGARDEILALNVGRPMPDGGMYQG--GAFPEGMTVLTPR--GQSASDQPPAATSAGWLPGE--TVVVEPGDNVWDISAERLDRADGETLTPTNAEIADHMHLVIDTNT---FPSGNPSLIFPGDTINFPAIGNPPLAPPTPVPPLPPQPEIDLPAPPATEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTPGTEQTALTDNDASPDRSL-VTLAGVTGTVALA-SGL-----ATALVRQRRRRRALGTGRPSRLSTRQA-----EVETAIVAASDVPFTRWAGEELAALARQLTPTAIKGAPIAVELEPGVGIEILWDQPCHTAPIPWEATDGGWSWRVHYDPDEPTPLAEWPSPIPALVTVG 1272
            +  +R D+ ++IA R   D L     EIL LNVGR +PDG          P G  +L P   G+S  D  P          E  T+ V+PGDN+W IS +RL    G    PT+AE+  +   VID N       GNPSLI PG TI  PA G+   A P P P          P      XXXXXXXXXX        XXXXXXXXXXXXXXXXX  P   +         PD    ++  G T  +A+A SGL     A  L R  RRR+     R  R  TR A     ++  A+++ +D          LA LA  L   A    P  +  +    +E+L D P    P  W ++D G  W +   P       E  SP P LVT+G
Sbjct:  178 VTVQRHDSLWAIAERHLGDGLRWK--EILDLNVGRMLPDGTTITATDDTPPTGTVLLLPADAGRSTPDPAPXXXXXXXXXXEASTITVQPGDNLWTISEDRLGIDLGRE--PTDAEVGPYWDEVIDANRDRFIQPGNPSLIHPGQTIVLPATGH---AAPAPTP-------ATTPXXXXXXXXXXXXXXXXEHQDQLDQXXXXXXXXXXXXXXXXXAAPHPAEEPPPSPAQGPDTGDGLSSMGATAPIAIAVSGLSSIVLAVGLKRLLRRRQRDAAVRRERRGTRDAPPDLRKLHHAVISQADDERVDDLHSILAWLATALAEAASPRRPRIIR-QSAESLEVLLDHPDPNPPAGWTSSDDGTIWNLEVPPHVDELPDELLSPAPLLVTIG 553          
BLAST of mRNA_P-wetherbeei_contig19545.2.1 vs. uniprot
Match: A0A349BCH0_9ACTN (BTAD domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349BCH0_9ACTN)

HSP 1 Score: 70.5 bits (171), Expect = 3.020e-9
Identity = 60/178 (33.71%), Postives = 86/178 (48.31%), Query Frame = 1
Query:   82 PAATVVANDARHS--IQNEHSEHPDLVSEIVARRRDTPYSIAARMFPDRLDGAR-DEILALNVGRPMPDGGMYQGG--AFPEGMTVLTPRGQSASDQPPAATSAGWLPGETVVVEPGDNVWDISAERLDRADGETLTPTNAEIADHMHLVIDTNTFPSGNPSLIFPGDTINFPAIGNP 600
            PA T  A+ A  S     + S+H         +R D+ + +A  +F D   G R  E+  LNVGR M DG +  G   A  +G T+  P G+     P  A+    +P E V+VE GDN+WD+S E L+ +        +AEIA +   VI  N    G+P+LI P   ++ P  G P
Sbjct:  137 PATTATAHRAASSGATSEKVSQHT-----YEVQRHDSWWGVAEALFGD---GTRWRELRDLNVGRAMNDGYVITGTTEAMNDGWTIWVPAGEGV---PLGASEI--VPAEDVIVERGDNLWDLSEEHLEASIEREAA--DAEIASYWQEVISANQPGLGDPNLIHPDQVVHLPGRGEP 299          
BLAST of mRNA_P-wetherbeei_contig19545.2.1 vs. uniprot
Match: A0A539E1I9_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539E1I9_9ACTN)

HSP 1 Score: 65.1 bits (157), Expect = 6.280e-9
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = -1
Query: 1192 ACSYGDQGGDGRGPFGEGCWFVGVVVDAP 1278
            ACSYGDQGGD RGPFGEGCWF+GVVVDAP
Sbjct:  131 ACSYGDQGGDRRGPFGEGCWFLGVVVDAP 159          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19545.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A539E1M1_9ACTN3.830e-17171.77Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A6J7A483_9ZZZZ2.710e-15976.76Unannotated protein n=2 Tax=root TaxID=1 RepID=A0A... [more]
A0A2E0RWJ1_9ACTN1.670e-7642.69Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A524B2Q9_9ACTN8.500e-3538.96LysM domain-containing protein n=1 Tax=Acidimicrob... [more]
A0A349BBI3_9ACTN1.550e-3152.45LysM domain-containing protein n=1 Tax=Acidimicrob... [more]
A0A3C2B7U3_9ACTN5.730e-2654.37LysM domain-containing protein n=1 Tax=Acidimicrob... [more]
UPI00034605638.200e-1725.92LysM peptidoglycan-binding domain-containing prote... [more]
A0A7C4TJ52_9ACTN1.400e-1235.81LysM peptidoglycan-binding domain-containing prote... [more]
A0A349BCH0_9ACTN3.020e-933.71BTAD domain-containing protein n=1 Tax=Acidimicrob... [more]
A0A539E1I9_9ACTN6.280e-993.10Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19545contigP-wetherbeei_contig19545:1..1278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1146883.BLASA_1809
PFAMsBTAD,LysM
Model size1278
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue0.000261
EggNOG OGsCOG1652@1|root,COG3629@1|root,COG1652@2|Bacteria,COG3629@2|Bacteria,2I8YV@201174|Actinobacteria,4EUPJ@85013|Frankiales
DescriptionEvidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology
Cds size1278
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186175.7416492-CDS-P-wetherbeei_contig19545:0..12781683186175.7416492-CDS-P-wetherbeei_contig19545:0..1278Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19545 1..1278 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19545.2.1prot_P-wetherbeei_contig19545.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19545 1..1278 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19545.2.1

>prot_P-wetherbeei_contig19545.2.1 ID=prot_P-wetherbeei_contig19545.2.1|Name=mRNA_P-wetherbeei_contig19545.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=426bp
ITTTSTLAVFPSSALSSMPGSTQAKGRPAATVVANDARHSIQNEHSEHPD
LVSEIVARRRDTPYSIAARMFPDRLDGARDEILALNVGRPMPDGGMYQGG
AFPEGMTVLTPRGQSASDQPPAATSAGWLPGETVVVEPGDNVWDISAERL
DRADGETLTPTNAEIADHMHLVIDTNTFPSGNPSLIFPGDTINFPAIGNP
PLAPPTPVPPLPPQPEIDLPAPPATELHPPPPAPPDVPTPTEGPTIVIAT
GTTVPPRHPADTTPGTEQTALTDNDASPDRSLVTLAGVTGTVALASGLAT
ALVRQRRRRRALGTGRPSRLSTRQAEVETAIVAASDVPFTRWAGEELAAL
ARQLTPTAIKGAPIAVELEPGVGIEILWDQPCHTAPIPWEATDGGWSWRV
HYDPDEPTPLAEWPSPIPALVTVGTR
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mRNA from alignment at P-wetherbeei_contig19545:1..1278-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19545.2.1 ID=mRNA_P-wetherbeei_contig19545.2.1|Name=mRNA_P-wetherbeei_contig19545.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1278bp|location=Sequence derived from alignment at P-wetherbeei_contig19545:1..1278- (Phaeothamnion wetherbeei SAG_119_79)
ATCACCACCACGTCCACGCTCGCCGTGTTCCCCTCCTCCGCTCTCTCCAG CATGCCTGGCTCCACGCAAGCCAAGGGCCGACCCGCCGCGACGGTCGTCG CGAACGACGCTCGCCACTCGATTCAGAACGAGCACAGTGAACATCCCGAT CTGGTCAGCGAGATCGTCGCTCGACGCCGGGACACCCCCTACTCGATCGC CGCCCGCATGTTCCCTGACCGACTCGACGGTGCCCGCGACGAGATCCTCG CACTGAACGTCGGCCGACCGATGCCAGATGGCGGCATGTATCAGGGAGGT GCCTTCCCGGAGGGCATGACCGTGCTCACGCCTCGTGGACAGTCCGCCAG CGACCAACCGCCGGCCGCCACCAGCGCCGGCTGGCTGCCGGGAGAGACCG TGGTCGTCGAACCCGGCGACAACGTCTGGGACATCAGCGCCGAGCGGCTC GATCGCGCTGACGGCGAAACGCTGACGCCGACCAACGCCGAGATCGCTGA CCACATGCACCTGGTCATCGACACCAACACCTTCCCCAGCGGGAACCCCA GCCTGATCTTCCCCGGCGACACGATCAACTTCCCCGCGATCGGCAATCCA CCACTCGCGCCACCGACCCCGGTGCCGCCACTTCCACCCCAGCCCGAGAT CGATCTCCCAGCGCCGCCGGCGACCGAGCTTCATCCCCCGCCGCCCGCAC CGCCCGACGTACCCACACCCACCGAAGGGCCGACCATCGTCATCGCGACC GGCACCACGGTGCCGCCTCGGCATCCCGCTGACACCACGCCCGGCACTGA GCAAACCGCGCTCACGGACAACGACGCATCTCCGGACCGGTCGCTCGTCA CCCTCGCCGGAGTGACCGGAACCGTCGCGCTCGCCTCCGGTCTCGCCACC GCCCTCGTGCGACAGCGGCGTCGCCGCCGCGCCCTCGGCACCGGCCGACC GAGTCGACTCTCGACACGACAAGCCGAAGTCGAGACAGCGATCGTCGCCG CCTCCGACGTTCCCTTCACCCGTTGGGCCGGCGAGGAACTCGCCGCGCTC GCTCGCCAACTCACACCAACCGCTATCAAGGGCGCTCCGATCGCCGTCGA ACTGGAACCCGGAGTCGGCATCGAGATCCTCTGGGACCAACCGTGCCACA CCGCACCCATCCCATGGGAAGCCACCGACGGCGGCTGGTCATGGCGCGTC CACTACGACCCCGACGAACCAACACCCCTCGCCGAATGGCCCTCGCCCAT CCCCGCCTTGGTCACCGTAGGAACACGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19545:1..1278-

>mRNA_P-wetherbeei_contig19545.2.1 ID=mRNA_P-wetherbeei_contig19545.2.1|Name=mRNA_P-wetherbeei_contig19545.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1278bp|location=Sequence derived from alignment at P-wetherbeei_contig19545:1..1278- (Phaeothamnion wetherbeei SAG_119_79)
ATCACCACCACGTCCACGCTCGCCGTGTTCCCCTCCTCCGCTCTCTCCAG
CATGCCTGGCTCCACGCAAGCCAAGGGCCGACCCGCCGCGACGGTCGTCG
CGAACGACGCTCGCCACTCGATTCAGAACGAGCACAGTGAACATCCCGAT
CTGGTCAGCGAGATCGTCGCTCGACGCCGGGACACCCCCTACTCGATCGC
CGCCCGCATGTTCCCTGACCGACTCGACGGTGCCCGCGACGAGATCCTCG
CACTGAACGTCGGCCGACCGATGCCAGATGGCGGCATGTATCAGGGAGGT
GCCTTCCCGGAGGGCATGACCGTGCTCACGCCTCGTGGACAGTCCGCCAG
CGACCAACCGCCGGCCGCCACCAGCGCCGGCTGGCTGCCGGGAGAGACCG
TGGTCGTCGAACCCGGCGACAACGTCTGGGACATCAGCGCCGAGCGGCTC
GATCGCGCTGACGGCGAAACGCTGACGCCGACCAACGCCGAGATCGCTGA
CCACATGCACCTGGTCATCGACACCAACACCTTCCCCAGCGGGAACCCCA
GCCTGATCTTCCCCGGCGACACGATCAACTTCCCCGCGATCGGCAATCCA
CCACTCGCGCCACCGACCCCGGTGCCGCCACTTCCACCCCAGCCCGAGAT
CGATCTCCCAGCGCCGCCGGCGACCGAGCTTCATCCCCCGCCGCCCGCAC
CGCCCGACGTACCCACACCCACCGAAGGGCCGACCATCGTCATCGCGACC
GGCACCACGGTGCCGCCTCGGCATCCCGCTGACACCACGCCCGGCACTGA
GCAAACCGCGCTCACGGACAACGACGCATCTCCGGACCGGTCGCTCGTCA
CCCTCGCCGGAGTGACCGGAACCGTCGCGCTCGCCTCCGGTCTCGCCACC
GCCCTCGTGCGACAGCGGCGTCGCCGCCGCGCCCTCGGCACCGGCCGACC
GAGTCGACTCTCGACACGACAAGCCGAAGTCGAGACAGCGATCGTCGCCG
CCTCCGACGTTCCCTTCACCCGTTGGGCCGGCGAGGAACTCGCCGCGCTC
GCTCGCCAACTCACACCAACCGCTATCAAGGGCGCTCCGATCGCCGTCGA
ACTGGAACCCGGAGTCGGCATCGAGATCCTCTGGGACCAACCGTGCCACA
CCGCACCCATCCCATGGGAAGCCACCGACGGCGGCTGGTCATGGCGCGTC
CACTACGACCCCGACGAACCAACACCCCTCGCCGAATGGCCCTCGCCCAT
CCCCGCCTTGGTCACCGTAGGAACACGC
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