mRNA_P-wetherbeei_contig19532.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19532.1.3
Unique NamemRNA_P-wetherbeei_contig19532.1.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19532.1.3 vs. uniprot
Match: A0A2I0WX22_9ASPA (Gamma-tubulin complex component n=2 Tax=Epidendroideae TaxID=158332 RepID=A0A2I0WX22_9ASPA)

HSP 1 Score: 172 bits (435), Expect = 8.660e-46
Identity = 97/212 (45.75%), Postives = 128/212 (60.38%), Query Frame = 1
Query:   46 GLVRQAFAAALQEELTDYYRLIAVLEGQLNSNSDSASHAAAQPLGPAAAGAGAAASEFSTAAGSGNTIAPG--LTLLRLGVWATEPLERMKLMAAVVDGVGHLRGGALVGCLHAYTRHGDPAVRGFVRRLVGLVCQPLFGAVGRWVFEGELHDPCREFFVASNDAVANDVMWQQRYFVDKSMLPCFIPPSLANKILVIGKAINFMHACCGDT 675
            G V QAF +ALQ+EL+DYY+L+AVLE Q           +A P+                +AGS +  +PG  L+L RL VW  EP+ RM+LMA +VDG   LRGGA+ G +HA+ +HGDP V+ F+ RL+  VC PLF  V  WV EGEL D   EFF++S    A   +W++ Y +  SMLP FI P LA +IL  GK+INF+  CC D+
Sbjct:  250 GTVGQAFCSALQDELSDYYKLLAVLESQ-----------SANPI---------------PSAGSDSGGSPGNYLSLRRLSVWLAEPMVRMRLMALLVDGCQELRGGAMAGAIHAHAQHGDPLVQEFMGRLLRRVCSPLFEMVRTWVLEGELEDVFAEFFISSQPVKAES-LWREGYDIQSSMLPDFISPLLAQRILRTGKSINFLRVCCEDS 434          
BLAST of mRNA_P-wetherbeei_contig19532.1.3 vs. uniprot
Match: R7VEL5_CAPTE (Gamma-tubulin complex component n=1 Tax=Capitella teleta TaxID=283909 RepID=R7VEL5_CAPTE)

HSP 1 Score: 171 bits (434), Expect = 1.470e-45
Identity = 91/209 (43.54%), Postives = 122/209 (58.37%), Query Frame = 1
Query:   46 GLVRQAFAAALQEELTDYYRLIAVLEGQLNSNSDSASHAAAQPLGPAAAGAGAAASEFSTAAGSGNTIAPGLTLLRLGVWATEPLERMKLMAAVVDGVGHLRGGALVGCLHAYTRHGDPAVRGFVRRLVGLVCQPLFGAVGRWVFEGELHDPCREFFVASNDAVANDVMWQQRYFVDKSMLPCFIPPSLANKILVIGKAINFMHACCGD 672
            GLV Q+F +ALQ+ELTDYYRLIAVLE QL+   +   H                               P L+L +L VW  EPL R+K +AA+VD     RGG L   +H+Y +HGDP+++  V+  + LV QP+F  + RW+++GEL D   EFFVASN  V +D +W  +Y V K+M+P FI P  ANKIL+ GK+INF+   C D
Sbjct:  298 GLVAQSFLSALQQELTDYYRLIAVLESQLHQE-EVGGH-------------------------------PTLSLRQLVVWTCEPLVRIKALAAMVDVCQGKRGGGLASAIHSYLQHGDPSIQALVKHTLTLVVQPIFSTITRWIYDGELEDAYHEFFVASNPVVKDDRLWHDKYTVRKAMIPSFISPDQANKILLTGKSINFLRQVCKD 474          
BLAST of mRNA_P-wetherbeei_contig19532.1.3 vs. uniprot
Match: A0A1D1YX60_9ARAE (Gamma-tubulin complex component n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YX60_9ARAE)

HSP 1 Score: 171 bits (432), Expect = 2.420e-45
Identity = 94/209 (44.98%), Postives = 124/209 (59.33%), Query Frame = 1
Query:   46 GLVRQAFAAALQEELTDYYRLIAVLEGQLNSNSDSASHAAAQPLGPAAAGAGAAASEFSTAAGSGNTIAPGLTLLRLGVWATEPLERMKLMAAVVDGVGHLRGGALVGCLHAYTRHGDPAVRGFVRRLVGLVCQPLFGAVGRWVFEGELHDPCREFFVASNDAVANDVMWQQRYFVDKSMLPCFIPPSLANKILVIGKAINFMHACCGD 672
            G + QAF AALQ+EL+DYY+L+AVLE Q +++          P+ P            S +   GN     LTL RL VW  EP  RM+LMA +VDG   LRGGA+ G +H + +HGDP V+ F+ RL+  VC PLF  V  WV EG+L D   EFF+ S    A   +W++ Y +  SMLP FI P+LA++IL  GK+INF+  CC D
Sbjct:  270 GTIGQAFCAALQDELSDYYKLLAVLESQSSNH----------PIPP-----------VSVSVSGGNY----LTLRRLAVWLAEPTVRMRLMAVLVDGCRSLRGGAMAGAIHGHAQHGDPLVQEFMGRLLRRVCSPLFEMVRSWVLEGQLDDVFAEFFIVSQPVKAES-LWREGYRIQSSMLPSFISPTLASRILRTGKSINFLRVCCED 452          
BLAST of mRNA_P-wetherbeei_contig19532.1.3 vs. uniprot
Match: A0A2K1IVI0_PHYPA (Gamma-tubulin complex component n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IVI0_PHYPA)

HSP 1 Score: 171 bits (432), Expect = 2.870e-45
Identity = 97/209 (46.41%), Postives = 125/209 (59.81%), Query Frame = 1
Query:   46 GLVRQAFAAALQEELTDYYRLIAVLEGQLNSNSDSASHAAAQPLGPAAAGAGAAASEFSTAAGSGNTIAPGLTLLRLGVWATEPLERMKLMAAVVDGVGHLRGGALVGCLHAYTRHGDPAVRGFVRRLVGLVCQPLFGAVGRWVFEGELHDPCREFFVASNDAVANDVMWQQRYFVDKSMLPCFIPPSLANKILVIGKAINFMHACCGD 672
            G V QAF AALQEEL D+YRL+AVLEGQ++            P+ P   G             S N++   L+L RL VW  EPL RM+LMA +VD    LRGGA+ G +H + +HGDP VR F+ RL+  VC PLF  V RWV EGE+ D   EFFV++    A + +W++ Y +  +MLP FIP  LA +IL  GK+INF+  CC D
Sbjct:  305 GTVGQAFCAALQEELADFYRLMAVLEGQVH-----------HPI-PLMGG-----------VDSANSVGNYLSLRRLVVWLGEPLVRMRLMAVLVDDCKTLRGGAMAGAIHMHAQHGDPLVRAFLSRLLRQVCSPLFEMVRRWVLEGEIDDYYGEFFVSAKSVKA-EALWREGYQLQTAMLPSFIPEPLAQRILRTGKSINFLRVCCSD 489          
BLAST of mRNA_P-wetherbeei_contig19532.1.3 vs. uniprot
Match: A0A1Y1HNL0_KLENI (Gamma-tubulin complex component n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HNL0_KLENI)

HSP 1 Score: 170 bits (431), Expect = 3.670e-45
Identity = 95/208 (45.67%), Postives = 124/208 (59.62%), Query Frame = 1
Query:   49 LVRQAFAAALQEELTDYYRLIAVLEGQLNSNSDSASHAAAQPLGPAAAGAGAAASEFSTAAGSGNTIAPGLTLLRLGVWATEPLERMKLMAAVVDGVGHLRGGALVGCLHAYTRHGDPAVRGFVRRLVGLVCQPLFGAVGRWVFEGELHDPCREFFVASNDAVANDVMWQQRYFVDKSMLPCFIPPSLANKILVIGKAINFMHACCGD 672
            LV QAF +ALQ+EL DYYRL+AVLE Q+   +      A Q                ST  GS       L+L RL VW  EPL RM+LMA +VD  G L+GGAL   LH + +HGDP V  F+ +L+  VC PL   + RWV EGEL D  +EFF++ + +V +D +W+  Y V ++MLP FI P LA++IL  GK+INF+  CC D
Sbjct:  288 LVGQAFGSALQQELADYYRLMAVLEAQVQQKAPGPGELAGQ----------------STGGGS------YLSLRRLAVWLAEPLLRMRLMAILVDNCGSLKGGALASALHMHRQHGDPFVHEFIGQLLEKVCLPLLEMIRRWVLEGELDDGYQEFFISGDLSVGDDGLWRDCYKVRQAMLPSFISPELAHRILRAGKSINFLRGCCQD 473          
BLAST of mRNA_P-wetherbeei_contig19532.1.3 vs. uniprot
Match: A0A1S3XFD5_TOBAC (Gamma-tubulin complex component n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S3XFD5_TOBAC)

HSP 1 Score: 165 bits (418), Expect = 7.140e-45
Identity = 95/209 (45.45%), Postives = 124/209 (59.33%), Query Frame = 1
Query:   46 GLVRQAFAAALQEELTDYYRLIAVLEGQLNSNSDSASHAAAQPLGPAAAGAGAAASEFSTAAGSGNTIAPGLTLLRLGVWATEPLERMKLMAAVVDGVGHLRGGALVGCLHAYTRHGDPAVRGFVRRLVGLVCQPLFGAVGRWVFEGELHDPCREFFVASNDAVANDVMWQQRYFVDKSMLPCFIPPSLANKILVIGKAINFMHACCGD 672
            G V QAF AALQ+EL++YY+L+AVLEGQ  +           PLG             S  A SGN     ++L RL VW  EP+ +M+LMA +VD    L+GGA+ G +H + +HGDP V  F++RL+  VC PLF  V RWV EGEL D   EFF+ S   V ++ +W + Y +  SMLP FI  SLA +IL  GK+INF+  CC D
Sbjct:  313 GTVGQAFCAALQDELSEYYKLLAVLEGQAMNPI---------PLG-------------SGGACSGNY----MSLRRLSVWFAEPIVKMRLMAVLVDNCKSLKGGAMAGAIHMHAQHGDPLVNDFMKRLLRRVCSPLFEMVRRWVLEGELEDIFAEFFIVSR-TVKDESLWGEGYRLHASMLPAFISQSLAKQILRTGKSINFLRVCCDD 494          
BLAST of mRNA_P-wetherbeei_contig19532.1.3 vs. uniprot
Match: A0A835P6Z9_VANPL (Gamma-tubulin complex component n=2 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835P6Z9_VANPL)

HSP 1 Score: 164 bits (414), Expect = 1.110e-44
Identity = 94/210 (44.76%), Postives = 125/210 (59.52%), Query Frame = 1
Query:   46 GLVRQAFAAALQEELTDYYRLIAVLEGQLNSNSDSASHAAAQPLGPAAAGAGAAASEFSTAAGSGNTIAPGLTLLRLGVWATEPLERMKLMAAVVDGVGHLRGGALVGCLHAYTRHGDPAVRGFVRRLVGLVCQPLFGAVGRWVFEGELHDPCREFFVASNDAVANDVMWQQRYFVDKSMLPCFIPPSLANKILVIGKAINFMHACCGDT 675
            G V QAF +ALQEEL+DYY+L+AVLE Q ++   SA                   S++    G+GN     L+L RL VW  EP  RM+LMA +VDG   L+GGA+ G +H + +HGD  V+ F+ RL+  VC PLF  V  WV EGEL D   EFF+ S    A +++W++ Y +  SMLP FI P LA +IL   K+INF+ ACC D+
Sbjct:  258 GTVCQAFCSALQEELSDYYKLLAVLESQSSNPIPSAG------------------SDYG--GGTGNY----LSLRRLAVWLAEPTVRMRLMAVLVDGCRELKGGAMAGAIHGHAQHGDLLVQEFMARLLRRVCSPLFEMVRTWVLEGELEDVFSEFFILSQPVKA-ELLWREGYQIQSSMLPAFISPILAQRILRTEKSINFLRACCEDS 442          
BLAST of mRNA_P-wetherbeei_contig19532.1.3 vs. uniprot
Match: D8TC06_SELML (Gamma-tubulin complex component n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8TC06_SELML)

HSP 1 Score: 168 bits (426), Expect = 1.600e-44
Identity = 92/209 (44.02%), Postives = 122/209 (58.37%), Query Frame = 1
Query:   46 GLVRQAFAAALQEELTDYYRLIAVLEGQLNSNSDSASHAAAQPLGPAAAGAGAAASEFSTAAGSGNTIAPGLTLLRLGVWATEPLERMKLMAAVVDGVGHLRGGALVGCLHAYTRHGDPAVRGFVRRLVGLVCQPLFGAVGRWVFEGELHDPCREFFVASNDAVANDVMWQQRYFVDKSMLPCFIPPSLANKILVIGKAINFMHACCGD 672
            G V QA ++ALQEEL++YYRL+AVLE QL++                          F     +G ++   L+L RL VW  EPL RM+LMA +VD    LRGGA+ G +HA+ +HGDP VR F+ RL+  VC PLF  V RWV EGE+ D   EFF+ +    A + +W++ Y +   MLP FIP  LA +IL  GK+INF+  CC D
Sbjct:  273 GTVGQALSSALQEELSEYYRLMAVLEAQLHNQIP-----------------------FLAVGETGKSVGNYLSLRRLWVWLAEPLARMRLMAVLVDDCKCLRGGAMAGAIHAHAQHGDPLVRSFMSRLLRRVCSPLFEMVRRWVLEGEVDDLYGEFFILAQPVKA-EALWREGYSLQSGMLPSFIPEPLAQRILRTGKSINFLRVCCED 457          
BLAST of mRNA_P-wetherbeei_contig19532.1.3 vs. uniprot
Match: A0A6L2PLU2_COPFO (Uncharacterized protein n=1 Tax=Coptotermes formosanus TaxID=36987 RepID=A0A6L2PLU2_COPFO)

HSP 1 Score: 168 bits (426), Expect = 2.250e-44
Identity = 86/209 (41.15%), Postives = 120/209 (57.42%), Query Frame = 1
Query:   46 GLVRQAFAAALQEELTDYYRLIAVLEGQLNSNSDSASHAAAQPLGPAAAGAGAAASEFSTAAGSGNTIAPGLTLLRLGVWATEPLERMKLMAAVVDGVGHLRGGALVGCLHAYTRHGDPAVRGFVRRLVGLVCQPLFGAVGRWVFEGELHDPCREFFVASNDAVANDVMWQQRYFVDKSMLPCFIPPSLANKILVIGKAINFMHACCGD 672
            GL+ Q+  AAL+EELT+YYRL+AVL+ Q++       H                                GLTL RL VW  EP  RMK +AAVV+     RGGAL  C+H + +HGDP +R  V+ L+G VC+P++  + RW+ +GEL DP  EFF+A++  V  D++W ++Y V  S++P FIP + A KIL  GK+INF+   C D
Sbjct:  284 GLIGQSLIAALREELTEYYRLVAVLQSQVSFEERPPCHT------------------------------DGLTLCRLSVWTFEPQRRMKCLAAVVEACKDKRGGALASCVHGFLQHGDPVIRETVKNLLGAVCKPMYVMLSRWILDGELEDPYGEFFIAADLEVKGDLLWHEKYHVLDSVVPSFIPLAQAKKILATGKSINFLREICQD 462          
BLAST of mRNA_P-wetherbeei_contig19532.1.3 vs. uniprot
Match: A0A2K1IH10_PHYPA (Gamma-tubulin complex component n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IH10_PHYPA)

HSP 1 Score: 168 bits (425), Expect = 2.550e-44
Identity = 95/209 (45.45%), Postives = 123/209 (58.85%), Query Frame = 1
Query:   46 GLVRQAFAAALQEELTDYYRLIAVLEGQLNSNSDSASHAAAQPLGPAAAGAGAAASEFSTAAGSGNTIAPGLTLLRLGVWATEPLERMKLMAAVVDGVGHLRGGALVGCLHAYTRHGDPAVRGFVRRLVGLVCQPLFGAVGRWVFEGELHDPCREFFVASNDAVANDVMWQQRYFVDKSMLPCFIPPSLANKILVIGKAINFMHACCGD 672
            G V QAF AALQEEL D+YRL+AVLE Q++            P+                 A SGN++   L+L RL VW  EPL RM+LMA +VD    LRGGA+ G +H + +HGD  VR F+RRL+  V  PLF  V RWV EGE+ D   EFFV++    A + +W++ Y +  +MLP FIP  LA +IL  GK+INF+  CC D
Sbjct:  305 GTVGQAFCAALQEELADFYRLMAVLESQVH-----------HPI------------PLMVGADSGNSVGNYLSLRRLVVWLGEPLVRMRLMAVLVDDCKTLRGGAMAGAIHMHAQHGDSLVRTFLRRLLRQVSSPLFEMVRRWVLEGEIDDYYAEFFVSAQSVKA-EALWREGYQLQTAMLPSFIPEPLAQRILRTGKSINFLRVCCSD 489          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19532.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2I0WX22_9ASPA8.660e-4645.75Gamma-tubulin complex component n=2 Tax=Epidendroi... [more]
R7VEL5_CAPTE1.470e-4543.54Gamma-tubulin complex component n=1 Tax=Capitella ... [more]
A0A1D1YX60_9ARAE2.420e-4544.98Gamma-tubulin complex component n=1 Tax=Anthurium ... [more]
A0A2K1IVI0_PHYPA2.870e-4546.41Gamma-tubulin complex component n=1 Tax=Physcomitr... [more]
A0A1Y1HNL0_KLENI3.670e-4545.67Gamma-tubulin complex component n=1 Tax=Klebsormid... [more]
A0A1S3XFD5_TOBAC7.140e-4545.45Gamma-tubulin complex component n=1 Tax=Nicotiana ... [more]
A0A835P6Z9_VANPL1.110e-4444.76Gamma-tubulin complex component n=2 Tax=Vanilla pl... [more]
D8TC06_SELML1.600e-4444.02Gamma-tubulin complex component n=2 Tax=Selaginell... [more]
A0A6L2PLU2_COPFO2.250e-4441.15Uncharacterized protein n=1 Tax=Coptotermes formos... [more]
A0A2K1IH10_PHYPA2.550e-4445.45Gamma-tubulin complex component n=4 Tax=Physcomitr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19532contigP-wetherbeei_contig19532:59..1279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3218.PP1S44_159V6.1
PFAMsSpc97_Spc98
Model size675
Max annot lvl35493|Streptophyta
KEGG koko:K16570
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000278,GO:0000280,GO:0000923,GO:0000930,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005815,GO:0005819,GO:0005856,GO:0005874,GO:0005881,GO:0005886,GO:0005938,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0008092,GO:0008150,GO:0008275,GO:0009605,GO:0009607,GO:0009624,GO:0009898,GO:0009987,GO:0010638,GO:0010968,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0030863,GO:0030981,GO:0031109,GO:0031110,GO:0031112,GO:0031113,GO:0031116,GO:0031122,GO:0031334,GO:0031967,GO:0031975,GO:0032153,GO:0032155,GO:0032271,GO:0032273,GO:0032886,GO:0032991,GO:0033043,GO:0034622,GO:0043015,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044450,GO:0044459,GO:0044464,GO:0046785,GO:0048285,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051225,GO:0051258,GO:0051321,GO:0051415,GO:0051418,GO:0051493,GO:0051495,GO:0051704,GO:0051707,GO:0055028,GO:0065003,GO:0065007,GO:0070507,GO:0070925,GO:0071840,GO:0071944,GO:0090063,GO:0090307,GO:0097435,GO:0098552,GO:0098562,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0140014,GO:1902850,GO:1902903,GO:1902905,GO:1903047
Exons3
Evalue5.13e-46
EggNOG OGsKOG2000@1|root,KOG2000@2759|Eukaryota,37Q6F@33090|Viridiplantae,3G87I@35493|Streptophyta
DescriptionGamma-tubulin complex is necessary for microtubule nucleation at the centrosome
Cds size675
COG categoryZ
BRITEko00000,ko03036,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186175.4279616-CDS-P-wetherbeei_contig19532:58..1391683186175.4279616-CDS-P-wetherbeei_contig19532:58..139Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19532 59..139 +
1683186175.4379723-CDS-P-wetherbeei_contig19532:404..8861683186175.4379723-CDS-P-wetherbeei_contig19532:404..886Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19532 405..886 +
1683186175.4473245-CDS-P-wetherbeei_contig19532:1167..12791683186175.4473245-CDS-P-wetherbeei_contig19532:1167..1279Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19532 1168..1279 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19532.1.3prot_P-wetherbeei_contig19532.1.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19532 59..1279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19532.1.3

>prot_P-wetherbeei_contig19532.1.3 ID=prot_P-wetherbeei_contig19532.1.3|Name=mRNA_P-wetherbeei_contig19532.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=225bp
AAVRGGGGGGGGGGDGLVRQAFAAALQEELTDYYRLIAVLEGQLNSNSDS
ASHAAAQPLGPAAAGAGAAASEFSTAAGSGNTIAPGLTLLRLGVWATEPL
ERMKLMAAVVDGVGHLRGGALVGCLHAYTRHGDPAVRGFVRRLVGLVCQP
LFGAVGRWVFEGELHDPCREFFVASNDAVANDVMWQQRYFVDKSMLPCFI
PPSLANKILVIGKAINFMHACCGDT
back to top

mRNA from alignment at P-wetherbeei_contig19532:59..1279+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19532.1.3 ID=mRNA_P-wetherbeei_contig19532.1.3|Name=mRNA_P-wetherbeei_contig19532.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1221bp|location=Sequence derived from alignment at P-wetherbeei_contig19532:59..1279+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCAGTCCGGGGCGGCGGCGGCGGCGGCGGCGGCGGGGGGGACGGGCT CGTCCGCCAGGCATTCGCCGCGGCGCTGCAGGTGGGGGGAGAAGAAGCGG GATGTTTCTCTCCGCATCCTTGCCATGGTTCGTCGAGTTGCTATACTTTC CACGCATCCTCGTTTGTCGCCGGCGCCGGTCCGGGAATGGCAATTGCTGT TGCAGCGCTGTCGTTGAAAGGGGACTTCGGCTATAATAGGACGTCTCTGC ACTGTTATCCGCTTTCGCAATCCGCACTGCAGGGTGACGTCTTGCTTCAG GCCCAGCCACAGCCTCTCTTCCGCCCATCCGCCGCCCCGCAAACAGGAGG AGCTGACTGACTATTACCGGCTCATCGCCGTCTTGGAAGGGCAGCTCAAT TCCAACAGCGATTCTGCCAGCCATGCAGCAGCGCAACCGTTGGGACCAGC AGCGGCGGGAGCTGGTGCAGCCGCCAGTGAATTCTCGACGGCGGCGGGGA GCGGCAACACCATCGCGCCGGGGCTGACGCTGCTTCGTCTCGGCGTGTGG GCGACGGAGCCGCTTGAGCGCATGAAGCTCATGGCGGCCGTCGTCGACGG CGTCGGTCACCTGCGGGGCGGTGCGCTGGTGGGCTGCCTCCACGCCTACA CGCGGCATGGGGACCCGGCGGTACGCGGCTTTGTGCGGCGGCTGGTCGGC TTGGTCTGCCAGCCGCTGTTTGGGGCAGTGGGGCGCTGGGTATTTGAGGG TGAGCTGCACGACCCCTGCCGCGAGTTCTTCGTGGCAAGCAACGACGCCG TCGCCAATGACGTCATGTGGCAGCAAAGGTGCGTTTGGGTTTTGTTTCCG CCGCCTCCAGCTCTCTTTTGTGTTTCTTCTTGTCTACTCTCAAGCGACTA CCTAATTGCCGCCGCGACGAGCATTCAATGCCTCCGCGATTTCCAGTGGT GCATGAAACGGCATTTTTGCGTTAAATAGCGCAGTTCGCGAATGGGATTC CACCAGCTTCTCGCAATGGATGCACCTCTTTGTCCGAAGCTGCGACGGGC GGCCAAGATATTAATAGCTTTTCAGCTCGCGACGAACCGCAACTGGATCC CGGTGGCAGGTACTTCGTGGACAAGTCGATGTTGCCGTGCTTCATCCCGC CGTCGCTCGCCAACAAGATCCTTGTCATCGGCAAGGCCATCAATTTCATG CACGCCTGCTGCGGCGACACT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig19532:59..1279+

>mRNA_P-wetherbeei_contig19532.1.3 ID=mRNA_P-wetherbeei_contig19532.1.3|Name=mRNA_P-wetherbeei_contig19532.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=675bp|location=Sequence derived from alignment at P-wetherbeei_contig19532:59..1279+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCAGTCCGGGGCGGCGGCGGCGGCGGCGGCGGCGGGGGGGACGGGCT
CGTCCGCCAGGCATTCGCCGCGGCGCTGCAGGAGGAGCTGACTGACTATT
ACCGGCTCATCGCCGTCTTGGAAGGGCAGCTCAATTCCAACAGCGATTCT
GCCAGCCATGCAGCAGCGCAACCGTTGGGACCAGCAGCGGCGGGAGCTGG
TGCAGCCGCCAGTGAATTCTCGACGGCGGCGGGGAGCGGCAACACCATCG
CGCCGGGGCTGACGCTGCTTCGTCTCGGCGTGTGGGCGACGGAGCCGCTT
GAGCGCATGAAGCTCATGGCGGCCGTCGTCGACGGCGTCGGTCACCTGCG
GGGCGGTGCGCTGGTGGGCTGCCTCCACGCCTACACGCGGCATGGGGACC
CGGCGGTACGCGGCTTTGTGCGGCGGCTGGTCGGCTTGGTCTGCCAGCCG
CTGTTTGGGGCAGTGGGGCGCTGGGTATTTGAGGGTGAGCTGCACGACCC
CTGCCGCGAGTTCTTCGTGGCAAGCAACGACGCCGTCGCCAATGACGTCA
TGTGGCAGCAAAGGTACTTCGTGGACAAGTCGATGTTGCCGTGCTTCATC
CCGCCGTCGCTCGCCAACAAGATCCTTGTCATCGGCAAGGCCATCAATTT
CATGCACGCCTGCTGCGGCGACACT
back to top