mRNA_P-wetherbeei_contig19511.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19511.2.1
Unique NamemRNA_P-wetherbeei_contig19511.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19511.2.1 vs. uniprot
Match: A0A7X8XJ88_9BURK (Lipoprotein signal peptidase n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XJ88_9BURK)

HSP 1 Score: 143 bits (360), Expect = 1.480e-40
Identity = 74/150 (49.33%), Postives = 99/150 (66.00%), Query Frame = 1
Query:   10 WALLAIATAVLVADQLSKWAVWTHMTLNQSIPLLGRGLSLTYCHNTGGAFSMMPGATNFFLITGVVVSIGLLCYLPKLNNHHPLPATAYALILGGAIGNLIDRFAYHYVVDFIDLGWWPVFNIADSGITVGVVMLFLALILGK--DEPAK 453
            WA       VL+ DQ++K A+   M+L QS+ L G  L+LTY HN+GGAF + P    FFL T VVV +G+L  LP+L +     A A ALILGG +GNLIDR  +  VVDF+DLGWWP+FN+ADSGI+VG+ +L L  +  +  +E A+
Sbjct:    3 WAFGFWTAVVLMLDQITKAAIMDTMSLGQSLELPGGFLALTYIHNSGGAFGLFPQGGPFFLATAVVVVVGILWALPRLEHWGSWTAIACALILGGTLGNLIDRLRFGSVVDFLDLGWWPIFNVADSGISVGICVLLLQALFVRPPEESAR 152          
BLAST of mRNA_P-wetherbeei_contig19511.2.1 vs. uniprot
Match: A0A1M5PHI5_9FIRM (Lipoprotein signal peptidase n=1 Tax=Thermosyntropha lipolytica DSM 11003 TaxID=1123382 RepID=A0A1M5PHI5_9FIRM)

HSP 1 Score: 131 bits (330), Expect = 2.760e-36
Identity = 65/140 (46.43%), Postives = 90/140 (64.29%), Query Frame = 1
Query:   37 VLVADQLSKWAVWTHMTLNQSIPLLGRGLSLTYCHNTGGAFSMMPGATNFFLITGVVVSIGLLCYLPKLNNHHPLPATAYALILGGAIGNLIDRFAYHYVVDFIDLGWWPVFNIADSGITVG-VVMLFLALILGKDEPAK 453
            +LVADQLSK+AV T++ L +  P++    +LTY HN G AF +M G   FF++  ++   G++ Y+ +   H P       +I GGA+GNLIDR  Y  V+DFI +GWWPVFN+AD GITVG VV++F  L   K+E  K
Sbjct:   10 LLVADQLSKYAVITNLELGEKYPVIDEWFTLTYIHNKGAAFGIMEGGYWFFVVAALLAVAGMIYYVARYKPH-PFLEWVLGIIAGGALGNLIDRIFYQSVIDFISIGWWPVFNLADVGITVGSVVLIFFILYSEKNEEVK 148          
BLAST of mRNA_P-wetherbeei_contig19511.2.1 vs. uniprot
Match: A0A7V1WB97_9BACT (Lipoprotein signal peptidase n=1 Tax=Chthonomonadales bacterium TaxID=2282151 RepID=A0A7V1WB97_9BACT)

HSP 1 Score: 130 bits (327), Expect = 2.420e-35
Identity = 68/143 (47.55%), Postives = 87/143 (60.84%), Query Frame = 1
Query:   25 IATAVLVADQLSKWAVWTHMTLNQSIPLLGRGLSLTYCHNTGGAFSMMPGATNFFLITGVVVSIGLLCYLPKLNNHHPLPATAYALILGGAIGNLIDRFAYHYVVDFIDLGWWPVFNIADSGITVGVVML-FLALILGKDEPA 450
            IA  ++  DQ+SK  V  H+ L+   P+LG  LSLT+  NTGGAFS+       F+   VV  + L+    +   H    +   AL LGGAIGNLIDR  + YVVDF DLGWWP+FN+ADS ITVG+V+L FL L   +  PA
Sbjct:   41 IAITIVACDQVSKHVVMQHLPLHVRTPVLGSFLSLTHTQNTGGAFSLFKAHNAVFVAISVVALVALIGAYHRFQRHDLWVSAGLALALGGAIGNLIDRARFGYVVDFFDLGWWPIFNVADSAITVGIVLLAFLFLFRKESAPA 183          
BLAST of mRNA_P-wetherbeei_contig19511.2.1 vs. uniprot
Match: A0A0M2U8E8_9FIRM (Lipoprotein signal peptidase n=1 Tax=Clostridiales bacterium PH28_bin88 TaxID=1605376 RepID=A0A0M2U8E8_9FIRM)

HSP 1 Score: 126 bits (316), Expect = 3.960e-34
Identity = 65/141 (46.10%), Postives = 88/141 (62.41%), Query Frame = 1
Query:   25 IATAVLVADQLSKWAVWTHMTLNQSIPLLGRGLSLTYCHNTGGAFSMMPGATNFFLITGVVVSIGLLCYLPKLNNHHPLPATAYALILGGAIGNLIDRFAYHYVVDFIDLGWWPVFNIADSGITVGVVMLFLALILGKDEP 447
            +A AVL++DQLSKWA+   M L QSIP++     +TY  N G AFS++P  T FF+I G++V   ++ +  ++     L   A AL LGGA+GNL+DR     VVDF+D   WPVFN ADS I VGV++L   L+   D P
Sbjct:    6 LAAAVLISDQLSKWAIQRTMELGQSIPVVDNIFHITYWRNPGAAFSLLPFRTTFFVIIGILVVTVIIVFFRRVPADRKLLQFALALQLGGAMGNLVDRVRIGSVVDFLDFRVWPVFNFADSAIVVGVILLSWDLLRTPDRP 146          
BLAST of mRNA_P-wetherbeei_contig19511.2.1 vs. uniprot
Match: UPI001BBBC766 (Signal peptidase II n=1 Tax=Syntrophomonadaceae bacterium TaxID=2093811 RepID=UPI001BBBC766)

HSP 1 Score: 126 bits (316), Expect = 3.960e-34
Identity = 68/141 (48.23%), Postives = 87/141 (61.70%), Query Frame = 1
Query:   19 LAIATAVLVADQLSKWAVWTHMTLNQSIPLLGRGLSLTYCHNTGGAFSMMPGATNFFLITGVVVSIGLLCYLPKLNNHHPLPATAYALILGGAIGNLIDRFAYHYVVDFIDLGWWPVFNIADSGITVGVVMLFLALILGKD 441
            L IA AVL+ DQLSKW +   M + QSIP++     +TY  N G AF ++   TNFF+I G++VS+ L+  L KL     L   A +L LGGA GNLIDR    YV DF D   WPVFNIADS I VGV++L   L++  +
Sbjct:    6 LLIAAAVLLFDQLSKWIIQHTMEIGQSIPVITNIFHITYWRNPGAAFGILAFHTNFFIIVGILVSLVLIVVLLKLPPGRSLLKIALSLQLGGAAGNLIDRMRTGYVTDFFDFRVWPVFNIADSAIVVGVILLSWVLLIAPE 146          
BLAST of mRNA_P-wetherbeei_contig19511.2.1 vs. uniprot
Match: UPI0018DDC4E5 (signal peptidase II n=1 Tax=methane-oxidizing endosymbiont of Gigantopelta aegis TaxID=2794938 RepID=UPI0018DDC4E5)

HSP 1 Score: 126 bits (316), Expect = 3.960e-34
Identity = 73/150 (48.67%), Postives = 90/150 (60.00%), Query Frame = 1
Query:   19 LAIATAVLVADQLSKWAVWTHMTLNQSIPLLGRGLSLTYCHNTGGAFSMMPGATN----FFLITGVVVSIGLLCYLPKLNNHHPLPATAYALILGGAIGNLIDRFAYHYVVDFIDL---GW-WPVFNIADSGITVGVVMLFLALILGKDE 444
            L ++  VL+ DQ SKW V   M L QSIPL+  G +LTY HNTG AFS++  A      FF    + +S+ L  +L +L  H  L A A +LILGGAIGNLIDR  Y YV+DF+DL    W WP FNIADS I VGV  + L   + K  
Sbjct:    5 LNLSLLVLILDQASKWLVVQSMQLYQSIPLMP-GFNLTYVHNTGAAFSLLSEAGGWQRWFFAFIALAISVILTLWLMRLKQHETLMAAALSLILGGAIGNLIDRLLYGYVIDFLDLYYQNWHWPAFNIADSAICVGVAFMLLESSIHKKS 153          
BLAST of mRNA_P-wetherbeei_contig19511.2.1 vs. uniprot
Match: A0A7X7LLC1_9FIRM (Lipoprotein signal peptidase n=1 Tax=Syntrophomonadaceae bacterium TaxID=2093811 RepID=A0A7X7LLC1_9FIRM)

HSP 1 Score: 124 bits (312), Expect = 1.420e-33
Identity = 63/131 (48.09%), Postives = 81/131 (61.83%), Query Frame = 1
Query:   37 VLVADQLSKWAVWTHMTLNQSIPLLGRGLSLTYCHNTGGAFSMMPGATNFFLITGVVVSIGLLCYLPKLNNHHPLPATAY---ALILGGAIGNLIDRFAYHYVVDFIDLGWWPVFNIADSGITVGVVMLFL 420
            V++ DQ+SKW V  +M L +S P +   ++LTY  N G AF +  G+T  F+I+ VVV   ++ Y    N  HPLP        LI GGA GN IDRF Y YVVDF DLGWWPVFNIAD  I +G ++L +
Sbjct:   10 VIIIDQISKWLVVNNMVLGESRPFIKGIMNLTYVQNQGAAFGLFDGSTWLFIISAVVVVTAVIYY----NLKHPLPFNMQIILGLITGGACGNFIDRFLYQYVVDFFDLGWWPVFNIADMAIVIGGILLII 136          
BLAST of mRNA_P-wetherbeei_contig19511.2.1 vs. uniprot
Match: D9S2Z9_THEOJ (Lipoprotein signal peptidase n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) TaxID=555079 RepID=D9S2Z9_THEOJ)

HSP 1 Score: 124 bits (312), Expect = 1.460e-33
Identity = 67/142 (47.18%), Postives = 87/142 (61.27%), Query Frame = 1
Query:    4 RLWALLAIATAVLVADQLSKWAVWTHMTLNQSIPLLGRGLSLTYCHNTGGAFSMMPGATNFFLITGVVVSIGLLCYLPKLNNHHPLPATAYALILGGAIGNLIDRFAYHYVVDFIDLGWWPVFNIADSGITVGVVMLFLALI 429
            R W L   A AV + DQL+K+ V T M  +QSIP++   L LTY  NTG AFS++ G   FF    ++V   L  Y+ ++     L   A +LILGGA+GNL+DR  + YVVDFID   WPVFN+ADS I +G V+L   LI
Sbjct:    2 RAWIL---AAAVFIFDQLTKYIVRTQMVPHQSIPVINNVLHLTYVQNTGAAFSILQGKVFFFSTASLIVIAALFFYISRIPPEQRLLRMALSLILGGALGNLVDRLRFGYVVDFIDFRIWPVFNLADSAIVIGEVVLVYILI 140          
BLAST of mRNA_P-wetherbeei_contig19511.2.1 vs. uniprot
Match: UPI001AD57F53 (Signal peptidase II n=1 Tax=Patescibacteria group bacterium TaxID=2052139 RepID=UPI001AD57F53)

HSP 1 Score: 124 bits (312), Expect = 2.130e-33
Identity = 75/152 (49.34%), Postives = 93/152 (61.18%), Query Frame = 1
Query:   25 IATAVLVADQLSKWAVWTHMTLNQSIPLLGRGLSLTYCHNTGGAFSMMPGATN----FFLITGVVVSIGLLCYLPKLNNHHPLPATAYALILGGAIGNLIDRFAYHYVVDFIDL---GW-WPVFNIADSGITVGVVMLFLALI-LGKDEPAK 453
            +A   LV DQ SK  +   M L QSIPL+     LTY HNTG AFS +  A      FF I  +VVSI +  +L +L  H  L A + +LILGGAIGNLIDR AY YV+DF+D+    W WP FNIADS IT+GV ++ L    +GK EP +
Sbjct:   12 LAVLALVLDQASKLIIANTMQLYQSIPLIPF-FKLTYVHNTGAAFSFLSQAGGWQRWFFAILAIVVSIIITIWLSRLKEHENLLAASLSLILGGAIGNLIDRLAYGYVIDFLDVYHDTWHWPAFNIADSAITLGVFLMLLESFGVGKSEPTE 162          
BLAST of mRNA_P-wetherbeei_contig19511.2.1 vs. uniprot
Match: A0A6I6DHA2_9FIRM (Lipoprotein signal peptidase n=1 Tax=Candidatus Syntrophocurvum alkaliphilum TaxID=2293317 RepID=A0A6I6DHA2_9FIRM)

HSP 1 Score: 124 bits (310), Expect = 2.760e-33
Identity = 66/148 (44.59%), Postives = 93/148 (62.84%), Query Frame = 1
Query:    4 RLWALLAIATAVLVADQLSKWAVWTHMTLNQSIPLLGRGLSLTYCHNTGGAFSMMPGATNFFLITGVVVSIGLLCYLPKLNNHHPLPAT-AYALILGGAIGNLIDRFAYHYVVDFIDLGWWPVFNIADSGITVGVVMLFLALILGKDE 444
            R W  +AI   +L+ DQ+SK+ + T+M+L QSIP++   ++ TY HN G AF M+ G +  F I+ ++V   L  Y  K +   P  A  A  LI+GG+IGN IDR  +  VVDFIDLGWWP+FNIAD  I VG ++L + L + + E
Sbjct:    2 RFWLTVAI---ILIFDQVSKYLIITNMSLGQSIPVISGIINFTYIHNPGAAFGMLAGKSWVFYISAIIVISALTFYYLKYST--PFYAVIAMGLIVGGSIGNFIDRIRFDSVVDFIDLGWWPIFNIADIAIVVGGIVLIIYLFVERSE 144          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19511.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X8XJ88_9BURK1.480e-4049.33Lipoprotein signal peptidase n=1 Tax=Burkholderial... [more]
A0A1M5PHI5_9FIRM2.760e-3646.43Lipoprotein signal peptidase n=1 Tax=Thermosyntrop... [more]
A0A7V1WB97_9BACT2.420e-3547.55Lipoprotein signal peptidase n=1 Tax=Chthonomonada... [more]
A0A0M2U8E8_9FIRM3.960e-3446.10Lipoprotein signal peptidase n=1 Tax=Clostridiales... [more]
UPI001BBBC7663.960e-3448.23Signal peptidase II n=1 Tax=Syntrophomonadaceae ba... [more]
UPI0018DDC4E53.960e-3448.67signal peptidase II n=1 Tax=methane-oxidizing endo... [more]
A0A7X7LLC1_9FIRM1.420e-3348.09Lipoprotein signal peptidase n=1 Tax=Syntrophomona... [more]
D9S2Z9_THEOJ1.460e-3347.18Lipoprotein signal peptidase n=1 Tax=Thermosedimin... [more]
UPI001AD57F532.130e-3349.34Signal peptidase II n=1 Tax=Patescibacteria group ... [more]
A0A6I6DHA2_9FIRM2.760e-3344.59Lipoprotein signal peptidase n=1 Tax=Candidatus Sy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19511contigP-wetherbeei_contig19511:764..1240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog555079.Toce_1014
Preferred namelspA
PFAMsPeptidase_A8
Model size477
Max annot lvl186801|Clostridia
KEGG koko:K03101
KEGG Pathwayko03060,map03060
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.39e-34
EggNOG OGsCOG0597@1|root,COG0597@2|Bacteria,1VA9R@1239|Firmicutes,24QPP@186801|Clostridia,42GTZ@68295|Thermoanaerobacterales
EC3.4.23.36
DescriptionThis protein specifically catalyzes the removal of signal peptides from prolipoproteins
Cds size477
COG categoryM
BRITEko00000,ko00001,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186174.965691-CDS-P-wetherbeei_contig19511:763..12401683186174.965691-CDS-P-wetherbeei_contig19511:763..1240Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19511 764..1240 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19511.2.1prot_P-wetherbeei_contig19511.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19511 764..1240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19511.2.1

>prot_P-wetherbeei_contig19511.2.1 ID=prot_P-wetherbeei_contig19511.2.1|Name=mRNA_P-wetherbeei_contig19511.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=159bp
VRLWALLAIATAVLVADQLSKWAVWTHMTLNQSIPLLGRGLSLTYCHNTG
GAFSMMPGATNFFLITGVVVSIGLLCYLPKLNNHHPLPATAYALILGGAI
GNLIDRFAYHYVVDFIDLGWWPVFNIADSGITVGVVMLFLALILGKDEPA
KLQAATAP*
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mRNA from alignment at P-wetherbeei_contig19511:764..1240+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19511.2.1 ID=mRNA_P-wetherbeei_contig19511.2.1|Name=mRNA_P-wetherbeei_contig19511.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig19511:764..1240+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCGTCTGTGGGCATTGTTGGCCATCGCGACGGCCGTTTTGGTGGCCGA CCAGCTCAGCAAATGGGCCGTTTGGACGCACATGACGCTCAACCAGAGCA TTCCGCTCCTGGGCCGGGGTCTGAGCCTTACCTATTGCCACAACACCGGC GGCGCGTTCAGCATGATGCCTGGAGCCACCAACTTCTTTCTGATCACAGG TGTCGTGGTCAGTATAGGGCTGCTTTGCTATCTGCCCAAGCTCAACAACC ATCACCCCCTGCCTGCCACGGCCTACGCATTGATCTTGGGCGGAGCCATC GGTAACCTCATCGATCGATTTGCCTACCATTATGTGGTGGACTTTATCGA CCTGGGCTGGTGGCCGGTCTTCAATATCGCCGACTCCGGGATCACTGTAG GAGTCGTCATGCTTTTTCTGGCGCTCATTTTGGGCAAAGACGAACCTGCC AAGCTTCAGGCCGCGACGGCCCCTTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19511:764..1240+

>mRNA_P-wetherbeei_contig19511.2.1 ID=mRNA_P-wetherbeei_contig19511.2.1|Name=mRNA_P-wetherbeei_contig19511.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig19511:764..1240+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCGTCTGTGGGCATTGTTGGCCATCGCGACGGCCGTTTTGGTGGCCGA
CCAGCTCAGCAAATGGGCCGTTTGGACGCACATGACGCTCAACCAGAGCA
TTCCGCTCCTGGGCCGGGGTCTGAGCCTTACCTATTGCCACAACACCGGC
GGCGCGTTCAGCATGATGCCTGGAGCCACCAACTTCTTTCTGATCACAGG
TGTCGTGGTCAGTATAGGGCTGCTTTGCTATCTGCCCAAGCTCAACAACC
ATCACCCCCTGCCTGCCACGGCCTACGCATTGATCTTGGGCGGAGCCATC
GGTAACCTCATCGATCGATTTGCCTACCATTATGTGGTGGACTTTATCGA
CCTGGGCTGGTGGCCGGTCTTCAATATCGCCGACTCCGGGATCACTGTAG
GAGTCGTCATGCTTTTTCTGGCGCTCATTTTGGGCAAAGACGAACCTGCC
AAGCTTCAGGCCGCGACGGCCCCTTAG
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