mRNA_P-wetherbeei_contig1951.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1951.1.1
Unique NamemRNA_P-wetherbeei_contig1951.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1951.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1951contigP-wetherbeei_contig1951:3106..3848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008870069.1
PFAMsLaminin_G_3,zf-TRAF
Model size734
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons2
Evalue4.18e-06
EggNOG OGs2AISC@1|root,2RZ5E@2759|Eukaryota
DescriptionTRAF-type zinc finger
Cds size630
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186174.8168404-UTR-P-wetherbeei_contig1951:3105..31061683186174.8168404-UTR-P-wetherbeei_contig1951:3105..3106Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1951 3106..3106 -
1683186174.838463-UTR-P-wetherbeei_contig1951:3736..38081683186174.838463-UTR-P-wetherbeei_contig1951:3736..3808Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1951 3737..3808 -
1683186174.8494382-UTR-P-wetherbeei_contig1951:3817..38481683186174.8494382-UTR-P-wetherbeei_contig1951:3817..3848Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1951 3818..3848 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186174.8283203-CDS-P-wetherbeei_contig1951:3106..37361683186174.8283203-CDS-P-wetherbeei_contig1951:3106..3736Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1951 3107..3736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1951.1.1prot_P-wetherbeei_contig1951.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1951 3107..3736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1951.1.1

>prot_P-wetherbeei_contig1951.1.1 ID=prot_P-wetherbeei_contig1951.1.1|Name=mRNA_P-wetherbeei_contig1951.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=210bp
MSRSVRFHVAHACPLRPIRCGAHGCGVTVAAGDADAHRHGPACPAHAELE
VLAARGAAQREPVVCDACGTALLRRDLLAHRREECIWRLMPCLECSLSLP
KLRMGDHRRFYCSTPHAVRLRLLPVAARSHQPYARPWAEAEEASSAAAAV
AAVAAVAQKTLAVRTVPTAKAPAAAAAAAAITADDRAPSFSADDANGVKT
VSEGSEPMQ*
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mRNA from alignment at P-wetherbeei_contig1951:3106..3848-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1951.1.1 ID=mRNA_P-wetherbeei_contig1951.1.1|Name=mRNA_P-wetherbeei_contig1951.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=743bp|location=Sequence derived from alignment at P-wetherbeei_contig1951:3106..3848- (Phaeothamnion wetherbeei SAG_119_79)
GTGGCGCGAGCGTTACATCTGCCCCGTCGAGCTCCGCCGCGCCCGCCTCG
CCCGGCGCGGCCGCGATCGCCTGCGGCTCGTGCCGTGCCCGAGGGGCTGC
GGCGCCGCGGTCATGAGCCGCAGCGTGCGCTTCCACGTCGCGCATGCCTG
CCCGCTGCGGCCGATCCGCTGCGGCGCCCACGGATGCGGCGTGACGGTCG
CCGCCGGCGACGCCGATGCGCACCGGCACGGCCCTGCCTGCCCGGCGCAC
GCCGAGTTAGAGGTCCTGGCGGCGCGTGGTGCGGCGCAGCGGGAACCCGT
GGTGTGTGACGCCTGCGGAACGGCGCTGCTGCGGCGGGACCTGCTGGCGC
ACCGGCGGGAGGAATGCATCTGGCGGCTGATGCCGTGCCTGGAATGCTCG
CTGAGCCTGCCGAAGCTGCGGATGGGCGACCACCGGCGCTTCTACTGCTC
TACGCCGCACGCGGTGCGGCTGCGACTGCTCCCGGTGGCGGCGCGCAGCC
ACCAGCCGTACGCGCGGCCGTGGGCGGAGGCAGAAGAAGCGTCGTCGGCG
GCGGCGGCGGTGGCGGCGGTGGCGGCGGTCGCGCAGAAAACGTTGGCAGT
AAGGACGGTTCCGACAGCAAAGGCACCGGCTGCGGCTGCGGCGGCAGCAG
CAATAACAGCGGATGACAGGGCGCCTTCTTTCTCTGCTGACGACGCTAAC
GGAGTCAAAACCGTATCAGAAGGGAGCGAGCCAATGCAATAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1951:3106..3848-

>mRNA_P-wetherbeei_contig1951.1.1 ID=mRNA_P-wetherbeei_contig1951.1.1|Name=mRNA_P-wetherbeei_contig1951.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=630bp|location=Sequence derived from alignment at P-wetherbeei_contig1951:3106..3848- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCCGCAGCGTGCGCTTCCACGTCGCGCATGCCTGCCCGCTGCGGCC
GATCCGCTGCGGCGCCCACGGATGCGGCGTGACGGTCGCCGCCGGCGACG
CCGATGCGCACCGGCACGGCCCTGCCTGCCCGGCGCACGCCGAGTTAGAG
GTCCTGGCGGCGCGTGGTGCGGCGCAGCGGGAACCCGTGGTGTGTGACGC
CTGCGGAACGGCGCTGCTGCGGCGGGACCTGCTGGCGCACCGGCGGGAGG
AATGCATCTGGCGGCTGATGCCGTGCCTGGAATGCTCGCTGAGCCTGCCG
AAGCTGCGGATGGGCGACCACCGGCGCTTCTACTGCTCTACGCCGCACGC
GGTGCGGCTGCGACTGCTCCCGGTGGCGGCGCGCAGCCACCAGCCGTACG
CGCGGCCGTGGGCGGAGGCAGAAGAAGCGTCGTCGGCGGCGGCGGCGGTG
GCGGCGGTGGCGGCGGTCGCGCAGAAAACGTTGGCAGTAAGGACGGTTCC
GACAGCAAAGGCACCGGCTGCGGCTGCGGCGGCAGCAGCAATAACAGCGG
ATGACAGGGCGCCTTCTTTCTCTGCTGACGACGCTAACGGAGTCAAAACC
GTATCAGAAGGGAGCGAGCCAATGCAATAA
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