mRNA_P-wetherbeei_contig195.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig195.4.1
Unique NamemRNA_P-wetherbeei_contig195.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig195.4.1 vs. uniprot
Match: A0A835ZJ37_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ37_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.930e-7
Identity = 25/42 (59.52%), Postives = 28/42 (66.67%), Query Frame = 3 
Query:  186 DIFGALWFAVPKHKVSHSRKRHRLLDRIPKRITHYTICGKCG 311
             +FG LWFAVPK KVS  RKR R   R PKRIT+ + C  CG
Sbjct:   79 SVFGPLWFAVPKTKVSPGRKRQRGYHRAPKRITNISTCEACG 120
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BLAST of mRNA_P-wetherbeei_contig195.4.1 vs. uniprot
Match: A0A7S1Y1G4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y1G4_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 7.400e-5
Identity = 18/37 (48.65%), Postives = 27/37 (72.97%), Query Frame = 3 
Query:  201 LWFAVPKHKVSHSRKRHRLLDRIPKRITHYTICGKCG 311
            LW AVPKH+ SHS+KR R  +++PK + ++ +C KC 
Sbjct:   81 LWMAVPKHRTSHSKKRLRSRNKVPKDVENWELCVKCN 117
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig195.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZJ37_9STRA1.930e-759.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1Y1G4_9STRA7.400e-548.65Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig195contigP-wetherbeei_contig195:4927..5355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog209285.XP_006690720.1
PFAMsRibosomal_L32p
Model size313
Max annot lvl4751|Fungi
KEGG koko:K02911
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons2
Evalue1.68e-05
EggNOG OGsCOG0333@1|root,KOG4080@2759|Eukaryota,3A91F@33154|Opisthokonta,3P7F9@4751|Fungi,3QYS4@4890|Ascomycota,21BCA@147550|Sordariomycetes,3U9SU@5139|Sordariales,3HE62@35718|Chaetomiaceae
DescriptionRibosomal L32p protein family
Cds size303
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186174.201275-CDS-P-wetherbeei_contig195:4926..50101683186174.201275-CDS-P-wetherbeei_contig195:4926..5010Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig195 4927..5010 -
1683186174.2112167-CDS-P-wetherbeei_contig195:5128..53471683186174.2112167-CDS-P-wetherbeei_contig195:5128..5347Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig195 5129..5347 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186174.222975-UTR-P-wetherbeei_contig195:5347..53551683186174.222975-UTR-P-wetherbeei_contig195:5347..5355Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig195 5348..5355 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig195.4.1prot_P-wetherbeei_contig195.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig195 4927..5347 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig195.4.1

>prot_P-wetherbeei_contig195.4.1 ID=prot_P-wetherbeei_contig195.4.1|Name=mRNA_P-wetherbeei_contig195.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
MTHVVAPALRARLETFLGSAGASFRRRPWPPSALVLVTDALPAAGGMTKS
PTSLRSLTLDIFGALWFAVPKHKVSHSRKRHRLLDRIPKRITHYTICGKC
G
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mRNA from alignment at P-wetherbeei_contig195:4927..5355-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig195.4.1 ID=mRNA_P-wetherbeei_contig195.4.1|Name=mRNA_P-wetherbeei_contig195.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=429bp|location=Sequence derived from alignment at P-wetherbeei_contig195:4927..5355- (Phaeothamnion wetherbeei SAG_119_79)
GGCACGTCATGACCCATGTCGTCGCGCCTGCGCTGCGAGCGCGTCTTGAA
ACGTTTCTTGGCTCCGCTGGAGCCTCATTTCGGCGACGACCTTGGCCGCC
GAGCGCGCTGGTCTTAGTGACCGATGCTTTACCAGCAGCTGGAGGGATGA
CCAAGTCGCCGACGAGCCTTCGCAGCCTTACTCTGGACATTTTTGGAGCG
CTGTGGTTTGCAGTCCCAAAGCACAAGGTGACGTTTCTCTAGTCCGATAG
CTCGACTTGCGTTTCCTTTCTTCATCCGTTCCCACATCGGCATTAATGCT
TGGAACAGTCCCATCTTGCCCCCACACCCCTCACACATCGTGCAGGTGTC
GCATTCTCGGAAAAGGCATCGCTTGCTTGACCGGATCCCAAAGCGCATCA
CGCACTACACCATTTGCGGCAAGTGCGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig195:4927..5355-

>mRNA_P-wetherbeei_contig195.4.1 ID=mRNA_P-wetherbeei_contig195.4.1|Name=mRNA_P-wetherbeei_contig195.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig195:4927..5355- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCCATGTCGTCGCGCCTGCGCTGCGAGCGCGTCTTGAAACGTTTCT
TGGCTCCGCTGGAGCCTCATTTCGGCGACGACCTTGGCCGCCGAGCGCGC
TGGTCTTAGTGACCGATGCTTTACCAGCAGCTGGAGGGATGACCAAGTCG
CCGACGAGCCTTCGCAGCCTTACTCTGGACATTTTTGGAGCGCTGTGGTT
TGCAGTCCCAAAGCACAAGGTGTCGCATTCTCGGAAAAGGCATCGCTTGC
TTGACCGGATCCCAAAGCGCATCACGCACTACACCATTTGCGGCAAGTGC
GGG
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