mRNA_P-wetherbeei_contig1949.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1949.3.1
Unique NamemRNA_P-wetherbeei_contig1949.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1949.3.1 vs. uniprot
Match: A0A835YHA8_9STRA (Cyclin-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHA8_9STRA)

HSP 1 Score: 241 bits (614), Expect = 1.620e-71
Identity = 114/172 (66.28%), Postives = 138/172 (80.23%), Query Frame = 1
Query:    1 MEVTPEQEREGKALVAVLACVLNKLIDANGANGRDQFDATLVTKFHALRPPAIKIQAYLERIHKYSSCSNECFVLALIYIDRLIQYNNFALTLLNAHRVIITSVMVAAKFFDDQYYNNAFYAKVGGVPGAELNSLEIEYLFRVNFTLHVTAEEFYKYKAQLINHAAAGLCDC 516
            ME T  Q  EGKA VAVLACVL KLI+AN A+G D  D   +TKFHAL PP I +  YLERI +Y+SCSNECFVL+L+YIDRLI +NNFALT  N HRV+ITSV++AAKFFDD YYNNA+Y+++GG+P  ELN+LE E+LF +NF L+VT  EFYKY++QL NHAA+GLC C
Sbjct:    1 MESTQAQAAEGKATVAVLACVLTKLIEANTASGHDHLDPACITKFHALMPPEISVADYLERIRRYASCSNECFVLSLVYIDRLILHNNFALTSYNVHRVVITSVLLAAKFFDDCYYNNAYYSRIGGIPVRELNTLEAEFLFGINFGLNVTPPEFYKYRSQLANHAASGLCKC 172          
BLAST of mRNA_P-wetherbeei_contig1949.3.1 vs. uniprot
Match: D8LIT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIT9_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 9.430e-70
Identity = 116/172 (67.44%), Postives = 134/172 (77.91%), Query Frame = 1
Query:    1 MEVTPEQEREGKALVAVLACVLNKLIDANGANGRDQFDATLVTKFHALRPPAIKIQAYLERIHKYSSCSNECFVLALIYIDRLIQYNNFALTLLNAHRVIITSVMVAAKFFDDQYYNNAFYAKVGGVPGAELNSLEIEYLFRVNFTLHVTAEEFYKYKAQLINHAAAGLCDC 516
            ME TPEQ  EG+ALV VLACVL KLI AN  +G D  +A  VTKFHALRPP I +  YL+RI KYSSCSNECFVL LIY+DR IQ N+FALT LN HRV ITSVMVAAKFFDDQYYNNA+YAKVGGVP  E+NSLEIE+LF ++F L VT+EE+  Y+ +L  H+   +C C
Sbjct:    1 MESTPEQVSEGRALVTVLACVLEKLIQANANSGHDHLEAGAVTKFHALRPPGIGVAEYLDRILKYSSCSNECFVLGLIYMDRFIQRNDFALTALNVHRVAITSVMVAAKFFDDQYYNNAYYAKVGGVPCVEMNSLEIEFLFGLDFNLAVTSEEYRNYRERLGEHSNCSVCGC 172          
BLAST of mRNA_P-wetherbeei_contig1949.3.1 vs. uniprot
Match: A0A7R9VFU4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VFU4_9STRA)

HSP 1 Score: 218 bits (555), Expect = 1.150e-63
Identity = 111/181 (61.33%), Postives = 137/181 (75.69%), Query Frame = 1
Query:    1 MEVTPEQEREGKALVAVLACVLNKLIDANGANGRDQFDATLVTKFHALRPPAIKIQAYLERIHKYSSCSNECFVLALIYIDRLIQYNNFALTLLNAHRVIITSVMVAAKFFDDQYYNNAFYAKVGGVPGAELNSLEIEYLFRVNFTLHVTAEEFYKYKAQLINHAAAGLCDCRLAMPVPLP 543
            ME TPEQ+ EG A+V VLA VL++L+ AN      Q D   VTKFHAL+ P I I  Y+ERIHKY+SCS ECF+LALIYIDRLIQ NNF LT LN HRV+IT+V++AAKFFDD YYNNA+YAKVGGV  +E+N LE+E+LFR+NF+LHV  + F KY+A+L+ HAAA   +     P+P P
Sbjct:    1 MESTPEQQAEGMAVVRVLAAVLDRLVGANAPLA--QADPGQVTKFHALKAPGIGILQYIERIHKYASCSTECFILALIYIDRLIQRNNFLLTELNVHRVVITAVLLAAKFFDDAYYNNAYYAKVGGVLVSEMNGLEVEFLFRINFSLHVQTDVFNKYRAELVAHAAAAGLEQPKNAPLPSP 179          
BLAST of mRNA_P-wetherbeei_contig1949.3.1 vs. uniprot
Match: A0A6H5JKD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKD5_9PHAE)

HSP 1 Score: 231 bits (589), Expect = 2.460e-61
Identity = 116/172 (67.44%), Postives = 133/172 (77.33%), Query Frame = 1
Query:    1 MEVTPEQEREGKALVAVLACVLNKLIDANGANGRDQFDATLVTKFHALRPPAIKIQAYLERIHKYSSCSNECFVLALIYIDRLIQYNNFALTLLNAHRVIITSVMVAAKFFDDQYYNNAFYAKVGGVPGAELNSLEIEYLFRVNFTLHVTAEEFYKYKAQLINHAAAGLCDC 516
            ME TPEQ  EG+ALV VLACVL KLI AN  +G D  +A  VTKFHALRPP I +  YL+RI KYSSCSNECFVL LIY+DR IQ N+FALT LN HRV ITSVMVAAKFFDDQYYNNA+YAKVGGVP AE+NSLEI +LF ++F L VT+EE+  Y+ +L  H+    C C
Sbjct:    1 MESTPEQVSEGRALVTVLACVLEKLIQANANSGHDHLEAGAVTKFHALRPPGIGVAEYLDRILKYSSCSNECFVLGLIYMDRFIQRNDFALTALNVHRVAITSVMVAAKFFDDQYYNNAYYAKVGGVPCAEMNSLEIVFLFGLDFNLAVTSEEYRNYRERLGEHSNCPACGC 172          
BLAST of mRNA_P-wetherbeei_contig1949.3.1 vs. uniprot
Match: A0A7S1VVV1_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VVV1_9STRA)

HSP 1 Score: 218 bits (556), Expect = 4.700e-61
Identity = 110/179 (61.45%), Postives = 135/179 (75.42%), Query Frame = 1
Query:    1 MEVTPEQEREGKALVAVLACVLNKLIDANGANGRDQFDATLVTKFHALRPPAIKIQAYLERIHKYSSCSNECFVLALIYIDRLIQYNNFALTLLNAHRVIITSVMVAAKFFDDQYYNNAFYAKVGGVPGAELNSLEIEYLFRVNFTLHVTAEEFYKYKAQLINHAAAGLCDCRLAMPVP 537
            ME TPEQ  EG  +V VLA VL++L++AN +      D   VTKFHAL+ P I IQ YLERI KYSSCSNECFVLALIYIDRLIQ NNF LT LN HRV+IT++++AAKFFDD YYNNA+YAKVGGV  AE+N LE+++LFR+NF+LHVT E F+KYK +L++ +  G        P+P
Sbjct:    1 MEATPEQTAEGMVIVQVLAAVLDRLVNANTSLALT--DPGQVTKFHALKAPGIGIQQYLERIQKYSSCSNECFVLALIYIDRLIQRNNFLLTELNVHRVVITAILLAAKFFDDAYYNNAYYAKVGGVLVAEMNGLEVDFLFRINFSLHVTPELFHKYKEELMSQSTNGATSAVAVTPIP 177          
BLAST of mRNA_P-wetherbeei_contig1949.3.1 vs. uniprot
Match: A0A1Z5K8V5_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K8V5_FISSO)

HSP 1 Score: 216 bits (550), Expect = 6.670e-61
Identity = 112/184 (60.87%), Postives = 135/184 (73.37%), Query Frame = 1
Query:    1 MEVTPEQEREGKALVAVLACVLNKLIDANGANGRDQFDATLVTKFHALRPPAIKIQAYLERIHKYSSCSNECFVLALIYIDRLIQYNNFALTLLNAHRVIITSVMVAAKFFDDQYYNNAFYAKVGGVPGAELNSLEIEYLFRVNFTLHVTAEEFYKYKAQLINHAAAGLCDCRLAMPVPLPAYV 552
            ME TPEQ  EG  +V VL+ VL++L+ AN A    Q D   VTKFHA++ PAI IQ YLERIHKY+SCSNECFVLALIYIDRLIQ NNF LT LN HRV+ITSV++AAKFFDD YYNNA+YAKVGGV  +E+N LE+++LFR+NF+LHVT + F KY+ +L   A        L    PL + V
Sbjct:    1 METTPEQTAEGLVIVRVLSAVLDRLVSANAAMA--QADPGQVTKFHAMKAPAIGIQQYLERIHKYASCSNECFVLALIYIDRLIQRNNFLLTELNVHRVVITSVLLAAKFFDDAYYNNAYYAKVGGVLTSEMNGLEVDFLFRINFSLHVTPDVFEKYRVELAAQAGTVSFQTALDAVAPLVSQV 182          
BLAST of mRNA_P-wetherbeei_contig1949.3.1 vs. uniprot
Match: A0A7S1ZUY9_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZUY9_TRICV)

HSP 1 Score: 218 bits (555), Expect = 1.950e-60
Identity = 108/165 (65.45%), Postives = 131/165 (79.39%), Query Frame = 1
Query:    1 MEVTPEQEREGKALVAVLACVLNKLIDANGANGRDQFDATLVTKFHALRPPAIKIQAYLERIHKYSSCSNECFVLALIYIDRLIQYNNFALTLLNAHRVIITSVMVAAKFFDDQYYNNAFYAKVGGVPGAELNSLEIEYLFRVNFTLHVTAEEFYKYKAQLINHA 495
            ME TPEQ+ EG A+V VLA VL +L+ AN      Q D   VTKFHAL+ P I IQ YLERIHKY+SCS ECF+LALIYIDRLIQ NNF LT LN HRV+IT+V++AAKFFDD YYNNA+YAKVGGV  +E+N LE+E+LFR+NF+LHV  + F+KY+A+L+ HA
Sbjct:    1 MESTPEQQAEGMAVVRVLAAVLERLVSANAPLA--QSDPGQVTKFHALKAPGIGIQQYLERIHKYASCSTECFILALIYIDRLIQRNNFLLTELNVHRVVITAVLLAAKFFDDAYYNNAYYAKVGGVLVSEMNGLEVEFLFRINFSLHVQTDVFHKYRAELVAHA 163          
BLAST of mRNA_P-wetherbeei_contig1949.3.1 vs. uniprot
Match: A0A7S1GM66_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GM66_CYCTE)

HSP 1 Score: 215 bits (548), Expect = 2.190e-60
Identity = 106/182 (58.24%), Postives = 135/182 (74.18%), Query Frame = 1
Query:    1 MEVTPEQEREGKALVAVLACVLNKLIDANGANGRDQFDATLVTKFHALRPPAIKIQAYLERIHKYSSCSNECFVLALIYIDRLIQYNNFALTLLNAHRVIITSVMVAAKFFDDQYYNNAFYAKVGGVPGAELNSLEIEYLFRVNFTLHVTAEEFYKYKAQLINHAAAGLCDCRLAMPVPLPA 546
            ME TPEQ  EG  +V VL+ VL +L+ AN        D   VTKFHAL+ P I I  YLERIHKY+SCSNECF+LALIYIDRLIQ NNF LT LN HRV+IT++++AAKFFDD YYNNA+YAKVGGV  +E+N LE+++LFR+NF+LHVT E F+KY+ +L++H+   +  C   +   +PA
Sbjct:    1 METTPEQAAEGIVVVRVLSAVLERLVSANTTISLS--DPGQVTKFHALKAPGIGILQYLERIHKYASCSNECFILALIYIDRLIQRNNFLLTELNVHRVVITAILLAAKFFDDAYYNNAYYAKVGGVLVSEMNGLEVDFLFRINFSLHVTPELFHKYREELVSHSGGAISHCHQEVIPAIPA 180          
BLAST of mRNA_P-wetherbeei_contig1949.3.1 vs. uniprot
Match: A0A448ZSA5_9STRA (Uncharacterized protein n=2 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZSA5_9STRA)

HSP 1 Score: 214 bits (545), Expect = 6.450e-60
Identity = 104/165 (63.03%), Postives = 130/165 (78.79%), Query Frame = 1
Query:    1 MEVTPEQEREGKALVAVLACVLNKLIDANGANGRDQFDATLVTKFHALRPPAIKIQAYLERIHKYSSCSNECFVLALIYIDRLIQYNNFALTLLNAHRVIITSVMVAAKFFDDQYYNNAFYAKVGGVPGAELNSLEIEYLFRVNFTLHVTAEEFYKYKAQLINHA 495
            M+ TPE+  EG  LV VLA VL +L+ +N A  R   D   VTKFHAL+ P I +++YL+RI KY+SCSNECF+LALIYIDRLI+ NNF LT LN HRV+IT++++AAKFFDD YYNNA+YAKVGGV   ELN LE+++LFR+NF+LHV  EEF KYKAQL+ H+
Sbjct:    1 MDPTPEEAAEGSVLVKVLAAVLERLVKSNAATART--DPGQVTKFHALKAPGIGVESYLDRIQKYASCSNECFILALIYIDRLIEGNNFLLTELNVHRVVITAILLAAKFFDDAYYNNAYYAKVGGVLVNELNGLEVDFLFRINFSLHVQPEEFEKYKAQLVTHS 163          
BLAST of mRNA_P-wetherbeei_contig1949.3.1 vs. uniprot
Match: A0A6U6KJT1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6KJT1_9STRA)

HSP 1 Score: 216 bits (549), Expect = 1.430e-59
Identity = 108/167 (64.67%), Postives = 132/167 (79.04%), Query Frame = 1
Query:    1 MEVTPEQEREGKALVAVLACVLNKLIDANGANGRDQFDATLVTKFHALRPPAIKIQAYLERIHKYSSCSNECFVLALIYIDRLIQYNNFALTLLNAHRVIITSVMVAAKFFDDQYYNNAFYAKVGGVPGAELNSLEIEYLFRVNFTLHVTAEEFYKYKAQLINHAAA 501
            ME TPEQ+ EG A+V VL+ VL++L+ AN      Q D   VTKFHAL+ P I I  YLERIHKY+SCS ECF+LALIYIDRLIQ NNF LT LN HRV+IT+V++AAKFFDD YYNNA+YAKVGGV  +E+N LE+E+LFR+NF+LHV  + F KY+A+L+ HAAA
Sbjct:    1 MESTPEQQAEGMAVVRVLSAVLDRLVGANAPLA--QADPGQVTKFHALKAPGIGILQYLERIHKYASCSTECFILALIYIDRLIQRNNFLLTELNVHRVVITAVLLAAKFFDDAYYNNAYYAKVGGVLVSEMNGLEVEFLFRINFSLHVQTDVFNKYRAELVAHAAA 165          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1949.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YHA8_9STRA1.620e-7166.28Cyclin-domain-containing protein n=1 Tax=Tribonema... [more]
D8LIT9_ECTSI9.430e-7067.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9VFU4_9STRA1.150e-6361.33Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A6H5JKD5_9PHAE2.460e-6167.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1VVV1_9STRA4.700e-6161.45Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A1Z5K8V5_FISSO6.670e-6160.87Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S1ZUY9_TRICV1.950e-6065.45Hypothetical protein n=2 Tax=Trieres chinensis Tax... [more]
A0A7S1GM66_CYCTE2.190e-6058.24Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A448ZSA5_9STRA6.450e-6063.03Uncharacterized protein n=2 Tax=Pseudo-nitzschia m... [more]
A0A6U6KJT1_9STRA1.430e-5964.67Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1949contigP-wetherbeei_contig1949:3329..5829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LIT9
PFAMsCyclin
Model size1861
Max annot lvl2759|Eukaryota
KEGG koko:K06657
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.87e-71
EggNOG OGsKOG1674@1|root,KOG1674@2759|Eukaryota
Ec32 ortholog descriptionCyclin-like
Ec32 orthologEc-20_001500.1
DescriptionCyclin-dependent protein kinase
Cds size1641
COG categoryS
BRITEko00000,ko00001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186174.0394752-UTR-P-wetherbeei_contig1949:3328..35481683186174.0394752-UTR-P-wetherbeei_contig1949:3328..3548Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1949 3329..3548 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186174.0540535-CDS-P-wetherbeei_contig1949:3548..46661683186174.0540535-CDS-P-wetherbeei_contig1949:3548..4666Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1949 3549..4666 -
1683186174.0624044-CDS-P-wetherbeei_contig1949:4859..50741683186174.0624044-CDS-P-wetherbeei_contig1949:4859..5074Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1949 4860..5074 -
1683186174.0710106-CDS-P-wetherbeei_contig1949:5367..56391683186174.0710106-CDS-P-wetherbeei_contig1949:5367..5639Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1949 5368..5639 -
1683186174.082461-CDS-P-wetherbeei_contig1949:5793..58291683186174.082461-CDS-P-wetherbeei_contig1949:5793..5829Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1949 5794..5829 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1949.3.1prot_P-wetherbeei_contig1949.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1949 3549..5829 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1949.3.1

>prot_P-wetherbeei_contig1949.3.1 ID=prot_P-wetherbeei_contig1949.3.1|Name=mRNA_P-wetherbeei_contig1949.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=547bp
MEVTPEQEREGKALVAVLACVLNKLIDANGANGRDQFDATLVTKFHALRP
PAIKIQAYLERIHKYSSCSNECFVLALIYIDRLIQYNNFALTLLNAHRVI
ITSVMVAAKFFDDQYYNNAFYAKVGGVPGAELNSLEIEYLFRVNFTLHVT
AEEFYKYKAQLINHAAAGLCDCRLAMPVPLPAYVDYGVPPFGHDGLRRPP
AGGGNGPQAAAGAATSTVAATTGALPLHRPSVGNIQLQWAEHAATATTSA
RTAAQPDCRTALPARQAQQMCGCGGSGGGNGPCVGIGNGGGCGGGNCSHN
GYSSGHGGGHSGGHSGGHSGGHSGGGIGSYGSGGHGNGGHSSGGYSSGGY
SNPGSVGDVAFDSSGYGGVGGGGGGSYAAADGRHCDDYRCSCQRNGGVGV
CGGVGDGSVGNGGGGQIGGHHHNYAVARIRNNSGRGPLPGHRGPDAWQQP
AGGGVSGAVLAVTAHRGVAGGPASDGGLPDPTPPLQPPQGVYAAPRVDWA
DHVAGAATVPPPPPLLSHGCCAASSLTAEQPARASNRATTAGVQPW*
back to top

mRNA from alignment at P-wetherbeei_contig1949:3329..5829-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1949.3.1 ID=mRNA_P-wetherbeei_contig1949.3.1|Name=mRNA_P-wetherbeei_contig1949.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2501bp|location=Sequence derived from alignment at P-wetherbeei_contig1949:3329..5829- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGTCACACCGGAGCAGGAGAGAGAAGGAAAGGTGAGTTCGACCGC TCATCCATCTCCCTGCATCCTGTTCATGCGTTTCCTTTTGTCTTCTGAGG CCCCTTACTTATTTGCTTCTTGGACCAAATGCGATCGATTCCTCAACATC AACGGGAACGCCGTGCTGCTCTCCTTTCGTTTTGCTGCAGGCCCTGGTTG CCGTTCTCGCCTGCGTCCTCAACAAGCTCATTGATGCCAATGGGGCCAAT GGACGCGATCAATTCGATGCGACTCTCGTGACCAAGTTTCACGCGCTTCG GCCGCCAGCGATCAAGATACAGGCCTATCTTGAGCGCATCCACAAATACT CGTCGTGTAGCAACGAGTGCTTTGTGCTGGCTCTCATATATATTGACCGC CTCATTCAGTACAACAACTTTGCGCTCACGCTCCTAAACGCCCACCGCGT CATCATCACAAGGTGTGTTCCACGAAGCTCACGGCCCGGCTGGACTGCAA TGCGGCCTGCAATAACGATACATGCCTACGCCCTTTCAACCAATCTGCCA AACCTGCGGGATTCATATGCTGCATTGCTGAATGCTTGTTTTTCTTCATA TGCCATATGACCTCTAAGCGTCGGTTTCGACGGCCTTTTAGCGTCTCCGG GCCGGCAACAGCAGTCTCCTTCCCCGCTCCGGTTTCTCGTACCTCCGAAC CTAACCTCAACCTTACAAAACGACGATACGAAAAAACGCAATCCCTCCAC CGCAGCGTGATGGTGGCGGCAAAGTTCTTCGACGACCAGTACTACAACAA CGCCTTTTACGCCAAGGTCGGCGGCGTGCCCGGCGCTGAGCTCAACTCGC TGGAGATCGAGTACCTCTTCCGGGTCAACTTCACGCTGCATGTGACGGCG GAGGAGTTCTACAAGTACAAGGCACAGCTCATCAACCACGCTGCCGCCGG CCTCTGCGACTGCCGGCTGGGTGAGCGCTGTGATTCTTTCTTGCAGGAAG GAAGGTATTGTTTTGTTAGGTTTGGCGTTTCTTTTGTGTACTCGTTGAAT TTTCGGGGCCCTTCTACTGGCCGACCTAAGGAAGAAGCTCTGCGTTCTAT GGTTGTGGCGACTGAGCATCTTTTCTCTTCGCTGGCTGCCCTCTTATCCT TCTATGGTCGCAGCCATGCCGGTGCCGCTCCCGGCGTATGTGGATTACGG AGTGCCCCCATTCGGGCACGATGGACTGCGAAGGCCGCCGGCGGGCGGCG GCAACGGACCGCAGGCGGCAGCGGGCGCGGCGACATCGACGGTGGCAGCG ACGACGGGAGCGTTGCCGTTGCATCGGCCGTCCGTTGGCAACATCCAGCT GCAATGGGCGGAGCACGCGGCAACGGCAACGACGTCGGCACGAACGGCGG CGCAGCCGGATTGCCGCACGGCGTTGCCGGCGCGGCAGGCGCAACAGATG TGCGGCTGCGGAGGTTCGGGAGGGGGCAACGGGCCTTGCGTCGGCATCGG CAATGGCGGCGGCTGCGGCGGCGGAAACTGCAGCCACAACGGTTACAGCA GCGGCCACGGCGGCGGCCACAGTGGTGGGCACAGCGGCGGCCACAGCGGC GGCCATAGCGGAGGCGGGATCGGCAGTTACGGCAGTGGCGGCCATGGCAA CGGCGGGCATAGCAGCGGCGGTTACAGCAGCGGAGGCTACAGCAACCCCG GCAGCGTCGGCGATGTTGCATTCGACAGCTCGGGGTACGGCGGCGTCGGC GGTGGCGGCGGCGGCAGTTACGCAGCGGCGGATGGACGCCACTGCGACGA CTATCGGTGCTCATGCCAGCGCAATGGCGGCGTCGGCGTGTGCGGCGGCG TCGGCGACGGCAGCGTCGGCAATGGCGGCGGCGGCCAGATCGGCGGCCAC CACCACAACTATGCAGTGGCCAGGATTAGGAATAATTCCGGACGAGGGCC GCTGCCGGGGCATCGGGGGCCCGATGCCTGGCAACAGCCAGCAGGCGGCG GCGTCAGCGGCGCCGTCCTCGCTGTCACAGCCCACAGAGGGGTGGCAGGC GGGCCCGCAAGCGACGGCGGGCTGCCGGACCCCACGCCGCCGCTGCAACC ACCGCAAGGAGTCTACGCGGCGCCGCGGGTGGATTGGGCCGACCACGTCG CCGGCGCTGCCACCGTGCCGCCACCGCCGCCGCTGTTGTCGCATGGATGC TGCGCCGCTTCATCGCTTACGGCAGAGCAGCCGGCCCGGGCGTCTAACCG GGCCACGACAGCCGGAGTACAGCCGTGGTGAGAAACGAAAAAGACCGAAA AGATCGACTCGGATCGTGGCGGCGCGCCGCCTGAACGGCGGGGGAGCGGC GTTCCGTCGAGTTTCGATTCCGGACGTCGCGTCCCTCGCGGGACTGGGGT GGCCGCAGTATTCCTCGAAAGCTTCCCGGGCGGGAATGAGTTCCGTTTGG GAGCCCTCCCGGCACCCATACTAAGAAAGACCTAATCGTATTGTATTGCA G
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1949:3329..5829-

>mRNA_P-wetherbeei_contig1949.3.1 ID=mRNA_P-wetherbeei_contig1949.3.1|Name=mRNA_P-wetherbeei_contig1949.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1641bp|location=Sequence derived from alignment at P-wetherbeei_contig1949:3329..5829- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGTCACACCGGAGCAGGAGAGAGAAGGAAAGGCCCTGGTTGCCGT
TCTCGCCTGCGTCCTCAACAAGCTCATTGATGCCAATGGGGCCAATGGAC
GCGATCAATTCGATGCGACTCTCGTGACCAAGTTTCACGCGCTTCGGCCG
CCAGCGATCAAGATACAGGCCTATCTTGAGCGCATCCACAAATACTCGTC
GTGTAGCAACGAGTGCTTTGTGCTGGCTCTCATATATATTGACCGCCTCA
TTCAGTACAACAACTTTGCGCTCACGCTCCTAAACGCCCACCGCGTCATC
ATCACAAGCGTGATGGTGGCGGCAAAGTTCTTCGACGACCAGTACTACAA
CAACGCCTTTTACGCCAAGGTCGGCGGCGTGCCCGGCGCTGAGCTCAACT
CGCTGGAGATCGAGTACCTCTTCCGGGTCAACTTCACGCTGCATGTGACG
GCGGAGGAGTTCTACAAGTACAAGGCACAGCTCATCAACCACGCTGCCGC
CGGCCTCTGCGACTGCCGGCTGGCCATGCCGGTGCCGCTCCCGGCGTATG
TGGATTACGGAGTGCCCCCATTCGGGCACGATGGACTGCGAAGGCCGCCG
GCGGGCGGCGGCAACGGACCGCAGGCGGCAGCGGGCGCGGCGACATCGAC
GGTGGCAGCGACGACGGGAGCGTTGCCGTTGCATCGGCCGTCCGTTGGCA
ACATCCAGCTGCAATGGGCGGAGCACGCGGCAACGGCAACGACGTCGGCA
CGAACGGCGGCGCAGCCGGATTGCCGCACGGCGTTGCCGGCGCGGCAGGC
GCAACAGATGTGCGGCTGCGGAGGTTCGGGAGGGGGCAACGGGCCTTGCG
TCGGCATCGGCAATGGCGGCGGCTGCGGCGGCGGAAACTGCAGCCACAAC
GGTTACAGCAGCGGCCACGGCGGCGGCCACAGTGGTGGGCACAGCGGCGG
CCACAGCGGCGGCCATAGCGGAGGCGGGATCGGCAGTTACGGCAGTGGCG
GCCATGGCAACGGCGGGCATAGCAGCGGCGGTTACAGCAGCGGAGGCTAC
AGCAACCCCGGCAGCGTCGGCGATGTTGCATTCGACAGCTCGGGGTACGG
CGGCGTCGGCGGTGGCGGCGGCGGCAGTTACGCAGCGGCGGATGGACGCC
ACTGCGACGACTATCGGTGCTCATGCCAGCGCAATGGCGGCGTCGGCGTG
TGCGGCGGCGTCGGCGACGGCAGCGTCGGCAATGGCGGCGGCGGCCAGAT
CGGCGGCCACCACCACAACTATGCAGTGGCCAGGATTAGGAATAATTCCG
GACGAGGGCCGCTGCCGGGGCATCGGGGGCCCGATGCCTGGCAACAGCCA
GCAGGCGGCGGCGTCAGCGGCGCCGTCCTCGCTGTCACAGCCCACAGAGG
GGTGGCAGGCGGGCCCGCAAGCGACGGCGGGCTGCCGGACCCCACGCCGC
CGCTGCAACCACCGCAAGGAGTCTACGCGGCGCCGCGGGTGGATTGGGCC
GACCACGTCGCCGGCGCTGCCACCGTGCCGCCACCGCCGCCGCTGTTGTC
GCATGGATGCTGCGCCGCTTCATCGCTTACGGCAGAGCAGCCGGCCCGGG
CGTCTAACCGGGCCACGACAGCCGGAGTACAGCCGTGGTGA
back to top