mRNA_P-wetherbeei_contig1949.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1949.1.1
Unique NamemRNA_P-wetherbeei_contig1949.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1949.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1949contigP-wetherbeei_contig1949:253..1380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size604
Hectar predicted targeting categoryother localisation
Exons2
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186173.9482427-UTR-P-wetherbeei_contig1949:252..3171683186173.9482427-UTR-P-wetherbeei_contig1949:252..317Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1949 253..317 -
1683186173.9716904-UTR-P-wetherbeei_contig1949:1204..13801683186173.9716904-UTR-P-wetherbeei_contig1949:1204..1380Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1949 1205..1380 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186173.9563932-CDS-P-wetherbeei_contig1949:317..6471683186173.9563932-CDS-P-wetherbeei_contig1949:317..647Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1949 318..647 -
1683186173.9641397-CDS-P-wetherbeei_contig1949:1171..12041683186173.9641397-CDS-P-wetherbeei_contig1949:1171..1204Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1949 1172..1204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1949.1.1prot_P-wetherbeei_contig1949.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1949 318..1204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1949.1.1

>prot_P-wetherbeei_contig1949.1.1 ID=prot_P-wetherbeei_contig1949.1.1|Name=mRNA_P-wetherbeei_contig1949.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
MFRGGCRRGGQESATVMEPYNSSIDRPYDIGFPRWLETIVQCGRREVVHS
RRRRPALAPPRLAGQGRYRVGMLLSQPVSQRRCSIGSNAAPEVLPSCNRS
ATVIYKVIIGRNQGAGALPR*
back to top

mRNA from alignment at P-wetherbeei_contig1949:253..1380-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1949.1.1 ID=mRNA_P-wetherbeei_contig1949.1.1|Name=mRNA_P-wetherbeei_contig1949.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1128bp|location=Sequence derived from alignment at P-wetherbeei_contig1949:253..1380- (Phaeothamnion wetherbeei SAG_119_79)
TCGAAAGCGCCAATCTCGTTTGCTTTCGCAACAGCAGCCTTGAATCCGCG
CTCGGGACTTCCACTAGCGTTCCTCTCTGGACCTCTTTCTCTCTGCCTCA
CTCGCCGGCAGTTCTTGCACCATCCGGAGAGCGTTAAGGTGGCGACGTAC
GTGCTCGGCTTCAACCTCACCAAGGAATGTTTCGTGGTGGCTGCCGCCGC
GGCGGTCAGGCAAGCGACCGCTACCACTGCCGACGCCGCCACCGCTGCTT
TAGAAGGCGACGCGGTCAAGCTGGGGATCTCGCCGGCCGTGGCGGAAGCG
CTCTTTGCGCTGTTCGACGCCAACGGCGATGGGCCATAACTAGGCTTCCG
TCTGTGCGTTCTTCACGCCAAGGGTACTTGCGACCATTACGTTTTTAGCT
ACTTTGACTTCTTCCGTTAGACTCTCTCTTTTCGATGGGATGTCATGATT
TATTTGCTAGCAAAATGCTTGCGGGCACAAGTGGTGGCCGCACTCTTTCC
CTTGGATGCTGCCACACAGTTAATCCGTCACACCAGGATAGAAAGTAGCC
CAGTTGCGACTGGGCACATGATGCGTCCGCTTATCTCCACTTTCCGCACT
GACAACGTCACTTCCACGCCCTCTCTGACTTCCTCTCTCATGTTCCGCTC
CGTCCGTGCCCTCTCCGACTTCCTCTCTCATGTTCTGCTCCGTCCGTGCC
CTTTCTGTCCGCACCGTCTGGCCTCCGGAACAGGAGTCCGCGACCGTGAT
GGAGCCGTATAATTCGTCCATCGATCGGCCGTACGACATCGGCTTCCCAC
GGTGGCTCGAGACGATCGTCCAGTGTGGCCGGCGGGAAGTAGTGCACAGT
AGGAGACGTAGACCGGCGCTGGCACCGCCGCGGCTGGCCGGACAGGGGCG
CTATCGTGTTGGAATGCTGCTCAGTCAGCCAGTCAGCCAGCGCCGGTGTA
GCATCGGGAGTAACGCCGCACCAGAGGTTTTACCAAGTTGTAACCGCTCT
GCAACCGTGATCTACAAGGTTATTATCGGACGCAATCAAGGCGCTGGGGC
TCTTCCTCGATGAAGTGGGCCTGACGGACCACCACGTGCGCTGCCTGCGG
TCAGACAACGGTGGCGAGGTTATCGGCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1949:253..1380-

>mRNA_P-wetherbeei_contig1949.1.1 ID=mRNA_P-wetherbeei_contig1949.1.1|Name=mRNA_P-wetherbeei_contig1949.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig1949:253..1380- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTCGTGGTGGCTGCCGCCGCGGCGGTCAGGAGTCCGCGACCGTGAT
GGAGCCGTATAATTCGTCCATCGATCGGCCGTACGACATCGGCTTCCCAC
GGTGGCTCGAGACGATCGTCCAGTGTGGCCGGCGGGAAGTAGTGCACAGT
AGGAGACGTAGACCGGCGCTGGCACCGCCGCGGCTGGCCGGACAGGGGCG
CTATCGTGTTGGAATGCTGCTCAGTCAGCCAGTCAGCCAGCGCCGGTGTA
GCATCGGGAGTAACGCCGCACCAGAGGTTTTACCAAGTTGTAACCGCTCT
GCAACCGTGATCTACAAGGTTATTATCGGACGCAATCAAGGCGCTGGGGC
TCTTCCTCGATGA
back to top