mRNA_P-wetherbeei_contig19475.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: A0A4R5QGI3_9PROT (XRE family transcriptional regulator n=2 Tax=Acetobacteraceae TaxID=433 RepID=A0A4R5QGI3_9PROT) HSP 1 Score: 57.4 bits (137), Expect = 3.740e-9 Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 1
Query: 37 FGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGVTP 204
FGA+++ELR AG+TQ AL KK GV+Q ++E E G+ P + +LA ALGV P
Sbjct: 9 FGAKVKELREAAGLTQVALAKKAGVQQGQLSEIEIGKRIPRLDTIKKLARALGVPP 64
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: A0A0S8BZ51_9DELT (HTH cro/C1-type domain-containing protein n=2 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A0S8BZ51_9DELT) HSP 1 Score: 57.4 bits (137), Expect = 4.650e-9 Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 1
Query: 31 ERFGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGVT 201
E+ GARLRELR AG+TQA L ++ G+ + +IA E GR +PS + R+A A+GV+
Sbjct: 13 EKLGARLRELRLAAGLTQAELARRTGIHRPNIARVEAGRHTPSLETLARIANAIGVS 69
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: UPI0019D56EB9 (helix-turn-helix domain-containing protein n=1 Tax=Dankookia rubra TaxID=1442381 RepID=UPI0019D56EB9) HSP 1 Score: 57.4 bits (137), Expect = 9.820e-9 Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 1
Query: 37 FGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGVTP 204
FGA+++ELR AG+TQ AL KK GV+Q ++E E G+ P + +LA ALGV P
Sbjct: 50 FGAKVKELREAAGLTQVALAKKAGVQQGQLSEIEIGKRIPRLDTIKKLARALGVPP 105
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: A0A847F1F0_9DELT (Helix-turn-helix transcriptional regulator n=1 Tax=Sandaracinaceae bacterium TaxID=2510337 RepID=A0A847F1F0_9DELT) HSP 1 Score: 59.3 bits (142), Expect = 1.500e-8 Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 1
Query: 37 FGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGVTP 204
GAR+RELR AGITQA L ++ G+ + +IA E GR +PS + RLA ALGV P
Sbjct: 196 LGARIRELRQYAGITQAELARRTGIHRPNIARVEAGRHTPSLETISRLAEALGVNP 251
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: A0A2D5ELN7_9DELT (HTH cro/C1-type domain-containing protein n=2 Tax=Myxococcales TaxID=29 RepID=A0A2D5ELN7_9DELT) HSP 1 Score: 57.8 bits (138), Expect = 6.140e-8 Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 34 RFGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGV 198
R GARLRELR +AG+TQA L ++ G+ + +IA E GR +PS + RLA A+GV
Sbjct: 211 RLGARLRELRLEAGLTQAELARRTGIHRPNIARVEAGRHTPSLETLARLAGAIGV 265
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: A0A7V6HEI8_9BACT (ImmA/IrrE family metallo-endopeptidase n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7V6HEI8_9BACT) HSP 1 Score: 55.5 bits (132), Expect = 5.060e-7 Identity = 26/57 (45.61%), Postives = 39/57 (68.42%), Query Frame = 1
Query: 40 GARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGVTPDA 210
GAR+R+LR +A ++Q L ++ G+RQ + E G++ PS P ++RLA LGVT DA
Sbjct: 3 GARIRDLRRRAHLSQGELARRLGMRQGPVCNIELGKNLPSTPVLLRLAEVLGVTADA 59
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: UPI0009E2C25F (helix-turn-helix domain-containing protein n=1 Tax=Caenimonas sp. SL110 TaxID=1450524 RepID=UPI0009E2C25F) HSP 1 Score: 50.8 bits (120), Expect = 1.440e-6 Identity = 26/63 (41.27%), Postives = 38/63 (60.32%), Query Frame = 1
Query: 16 AEQVAERFGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGVTP 204
A+ + +RFG R+RELR+ AG +Q A KCG ++ ++ ERG +PS + A AL V P
Sbjct: 2 AKNLRQRFGERVRELRTAAGFSQEAFADKCGYARSYMSRVERGTGNPSLDAIEVFAKALRVEP 64
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: A0A2R7S1L6_9BURK (DNA-binding protein n=1 Tax=Pelomonas sp. HMWF004 TaxID=2056841 RepID=A0A2R7S1L6_9BURK) HSP 1 Score: 53.1 bits (126), Expect = 1.590e-6 Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = 1
Query: 19 EQVAERFGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGVT 201
E + ER G RL ELR+ AG++ AL K GV +++I+ ERG+SSP+ + +L+ ALGV+
Sbjct: 3 ENITERIGRRLHELRAAAGLSLDALAHKSGVSRSNISLIERGQSSPTAVVLDKLSSALGVS 63
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: A0A059G2Q8_9PROT (Helix-turn-helix domain-containing protein n=2 Tax=Hyphomonas oceanitis TaxID=81033 RepID=A0A059G2Q8_9PROT) HSP 1 Score: 51.6 bits (122), Expect = 1.930e-6 Identity = 32/84 (38.10%), Postives = 44/84 (52.38%), Query Frame = 1
Query: 34 RFGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGVTPD-----------AFTAIPGEKENRNFD 252
+F RL R K G +QA LG K ++ A+I +E+GR SPS+ V +LA AL ++ D A TA GE + N D
Sbjct: 14 KFAERLLSAREKRGFSQAELGAKADLQPAAIGHFEKGRRSPSFQNVRKLANALNISADYLLGRTDSMEGATTAFRGEDKLNNDD 97
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: A0A0C7NND4_9THEO (Cro/C1-type helix-turn-helix domain n=1 Tax=Moorella glycerini TaxID=55779 RepID=A0A0C7NND4_9THEO) HSP 1 Score: 51.2 bits (121), Expect = 2.000e-6 Identity = 25/71 (35.21%), Postives = 43/71 (60.56%), Query Frame = 1
Query: 37 FGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGVTPDAFTAIPGEKENRNF 249
FGAR+++LR AG++Q L ++ G+ Q+S++ E G SP+ ++ + ALG+T F GE E ++
Sbjct: 3 FGARIKQLRETAGLSQNELARRAGIAQSSLSYLETGAKSPNVETLLHICKALGITVSEFL---GENEGQSL 70 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig19475.2.1 >prot_P-wetherbeei_contig19475.2.1 ID=prot_P-wetherbeei_contig19475.2.1|Name=mRNA_P-wetherbeei_contig19475.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=85bp MDLEYAEQVAERFGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSback to top mRNA from alignment at P-wetherbeei_contig19475:541..795- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig19475.2.1 ID=mRNA_P-wetherbeei_contig19475.2.1|Name=mRNA_P-wetherbeei_contig19475.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig19475:541..795- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig19475:541..795- >mRNA_P-wetherbeei_contig19475.2.1 ID=mRNA_P-wetherbeei_contig19475.2.1|Name=mRNA_P-wetherbeei_contig19475.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig19475:541..795- (Phaeothamnion wetherbeei SAG_119_79)back to top |