mRNA_P-wetherbeei_contig19475.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19475.1.1
Unique NamemRNA_P-wetherbeei_contig19475.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19475.1.1 vs. uniprot
Match: A0A7S6MAF4_9BACT (Uncharacterized protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A7S6MAF4_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 6.820e-7
Identity = 23/73 (31.51%), Postives = 42/73 (57.53%), Query Frame = 1 
Query:    1 MEPSSIRSMLIRKPFLPFRIYLNDGRNFLITRPELVFIGGSTTVIGIVRNVDNEFWDEPVILANRRITSLEPI 219
            M P+++   L R PF+P R+YL+DGR++LIT P+L +I      +      ++   D+  +++ R I  +E +
Sbjct:    1 MLPTALDHELTRTPFVPVRLYLSDGRSYLITNPDLCWIERGAVYVARTDRPNSRIMDDVDLISLRHIVRVEKV 73
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19475.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S6MAF4_9BACT6.820e-731.51Uncharacterized protein n=1 Tax=Phycisphaeraceae b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19475contigP-wetherbeei_contig19475:223..465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size243
Hectar predicted targeting categoryother localisation
Exons1
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186173.5163143-CDS-P-wetherbeei_contig19475:222..4651683186173.5163143-CDS-P-wetherbeei_contig19475:222..465Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19475 223..465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19475.1.1prot_P-wetherbeei_contig19475.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19475 223..465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19475.1.1

>prot_P-wetherbeei_contig19475.1.1 ID=prot_P-wetherbeei_contig19475.1.1|Name=mRNA_P-wetherbeei_contig19475.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=81bp
MEPSSIRSMLIRKPFLPFRIYLNDGRNFLITRPELVFIGGSTTVIGIVRN
VDNEFWDEPVILANRRITSLEPIVEAPATS*
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mRNA from alignment at P-wetherbeei_contig19475:223..465-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19475.1.1 ID=mRNA_P-wetherbeei_contig19475.1.1|Name=mRNA_P-wetherbeei_contig19475.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig19475:223..465- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAACCGTCCTCGATTCGTTCGATGCTTATTCGCAAGCCATTCCTACC
CTTCCGGATCTACCTGAACGACGGGCGCAACTTCCTCATCACCCGCCCCG
AACTGGTGTTCATCGGTGGGTCCACGACGGTCATCGGGATCGTCCGCAAC
GTAGACAACGAGTTCTGGGACGAACCGGTCATCCTCGCGAACCGGCGTAT
CACTAGCCTGGAGCCGATAGTCGAAGCGCCAGCGACGAGTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19475:223..465-

>mRNA_P-wetherbeei_contig19475.1.1 ID=mRNA_P-wetherbeei_contig19475.1.1|Name=mRNA_P-wetherbeei_contig19475.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig19475:223..465- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAACCGTCCTCGATTCGTTCGATGCTTATTCGCAAGCCATTCCTACC
CTTCCGGATCTACCTGAACGACGGGCGCAACTTCCTCATCACCCGCCCCG
AACTGGTGTTCATCGGTGGGTCCACGACGGTCATCGGGATCGTCCGCAAC
GTAGACAACGAGTTCTGGGACGAACCGGTCATCCTCGCGAACCGGCGTAT
CACTAGCCTGGAGCCGATAGTCGAAGCGCCAGCGACGAGTTGA
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