mRNA_P-wetherbeei_contig19431.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19431.1.1
Unique NamemRNA_P-wetherbeei_contig19431.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19431.1.1 vs. uniprot
Match: A0A7Z9PPG7_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PPG7_9BACT)

HSP 1 Score: 209 bits (532), Expect = 3.150e-63
Identity = 90/193 (46.63%), Postives = 142/193 (73.58%), Query Frame = 1
Query:    7 YRDIVTTTTNDINSVYTVTGSVLISPIVLNLNGSGKLEASDGQWRPHPKVFSMTHRVFFDFYGNGFPVAMEWVGPNDGLLVKPKADGTVDGTCLFGTSTGYTNGYENLASLDDNMDGHLTGKELKGLSVWQDANGDAKVQPGELKSLESLGITELNIRHKDYKSTFTMKGKSCAMYDWWPNTFEIKKIKIKPS 585
            + D +TTT     +V+++TG   +SP++L+L+G+G+++AS G+W PH +V   +   FFDF+G+ FPV MEW GP DG+L  P +DG++DGT LFGTSTG+++G+E+L + D N DG ++G+EL+GLSVW D N DA+ Q GE+K++ SL I+EL ++H ++ ++F  +GKS  MYDWWP ++ + ++K+ P 
Sbjct:  194 FIDAITTTEYQSYAVWSITGVQSVSPLLLDLDGNGQIQASGGKWLPHTEV-DRSRLAFFDFHGDKFPVLMEWPGPEDGILCSPNSDGSIDGTNLFGTSTGFSSGFEHLKTRDSNGDGKISGEELQGLSVWTDLNSDARPQKGEVKTVTSLNISELTLKHNNFVASFVQEGKSKRMYDWWPQSYSLDRVKVMPK 385          
BLAST of mRNA_P-wetherbeei_contig19431.1.1 vs. uniprot
Match: A0A7X9AEM2_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AEM2_9BURK)

HSP 1 Score: 207 bits (527), Expect = 8.400e-62
Identity = 99/196 (50.51%), Postives = 135/196 (68.88%), Query Frame = 1
Query:    1 DVYRDIVTTTTNDINSVYTVTGSVLISPIVLNLNGSGKLEASDGQWRPHPKVFSMTHRVFFDFYGNGFPVAMEWVGPNDGLLVKPKADGTVDGTCLFGTSTGYTNGYENLASLDDNMDGHLTGKELKGLSVWQDANGDAKVQPGELKSLESLGITELNIRHKDYKSTFTMKGKSCAMYDWWPNTFEIKKIKIKPSV 588
            D YR    TT   ++  +T T    ISPIVL+L+G GKL+AS+GQW PH + F  T    FDF+ NGFPV  EWVGPNDGLLV+P  DGTVDG+CLFG++ G+ +GY+ +A+LD + +G L G EL GL +WQD N +A V  GEL +LESLGIT + + H ++K ++T  G++   YDWWP T EI+K  ++ ++
Sbjct:  256 DKYRKTSITTKRHVDYYHTHTVK-RISPIVLDLDGDGKLQASNGQWEPH-EGFDRTRVALFDFHANGFPVLTEWVGPNDGLLVRPNEDGTVDGSCLFGSTRGFAHGYDAMAALDFDNNGKLEGTELAGLMIWQDKNSNAVVDDGELLTLESLGITSIGVSHDNFKGSYTRNGQTFNSYDWWPTTMEIRKKNMEQAI 449          
BLAST of mRNA_P-wetherbeei_contig19431.1.1 vs. uniprot
Match: A0A7X8XLK1_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XLK1_9BURK)

HSP 1 Score: 201 bits (512), Expect = 3.760e-60
Identity = 95/188 (50.53%), Postives = 127/188 (67.55%), Query Frame = 1
Query:   10 RDIVTTTTNDINSV--YTVTGSVLISPIVLNLNGSGKLEASDGQWRPHPKVFSMTHRVFFDFYGNGFPVAMEWVGPNDGLLVKPKADGTVDGTCLFGTSTGYTNGYENLASLDDNMDGHLTGKELKGLSVWQDANGDAKVQPGELKSLESLGITELNIRHKDYKSTFTMKGKSCAMYDWWPNTFEIKK 567
            +D + T T +I++   Y V     +SPIVL+L+G GKL+AS G+W+PH   F  T    FDF  NGFPV  EWVGP DGLL++  ADG+VDG+CLFGT  G+ NGYE L +LD + +G+L G EL+GL VWQDANG+A +  GEL SL+ LGIT ++  H   + TF   GK+   +DWWP+  E++K
Sbjct:  200 KDYINTITTNIHTTNYYEVIERGSVSPIVLDLDGDGKLQASAGKWQPHESSFDKTRVALFDFNANGFPVLTEWVGPQDGLLLRSHADGSVDGSCLFGTFGGFANGYEALKALDVDGNGNLEGSELQGLKVWQDANGNAIIDAGELLSLDELGITSISTNHDSLRGTFVRNGKTARTFDWWPSVIELRK 387          
BLAST of mRNA_P-wetherbeei_contig19431.1.1 vs. uniprot
Match: A0A1V5PEI7_9BACT (Uncharacterized protein n=1 Tax=bacterium ADurb.Bin363 TaxID=1866927 RepID=A0A1V5PEI7_9BACT)

HSP 1 Score: 174 bits (442), Expect = 3.660e-50
Identity = 83/167 (49.70%), Postives = 103/167 (61.68%), Query Frame = 1
Query:   79 SPIVLNLNGSGKLEASDGQWRPHPKVFSMTHRVFFDFYGNGFPVAMEWVGPNDGLLVKPKADGTVDGTCLFGTSTGYTNGYENLASLDDNMDGHLTGKELKGLSVWQDANGDAKVQPGELKSLESLGITELNIRHKDYKSTFTMKGKSCAMYDWWPNTFEIKKIKIK 579
            SPIVL+LNG GKL+AS G W PH         V FD  G+GF   +EWV  NDGLL+ P  +  VDGT  FG + GY +GYE LAS D N DG L+G EL G+ VW D NGD K    ELKSL SLGITE++     +KS+F   G+    +DWWP    I+K+ ++
Sbjct:  184 SPIVLDLNGDGKLDASGGNWLPHNGFVDGVKTVRFDIDGDGFEDIVEWVSANDGLLIMPGEENIVDGTSFFGNNDGYNDGYEKLASFDTNKDGVLSGSELNGMKVWIDENGDGKAAKSELKSLSSLGITEISTTATGFKSSFVQNGQRKYSWDWWPTYMSIEKVAVE 350          
BLAST of mRNA_P-wetherbeei_contig19431.1.1 vs. uniprot
Match: A0A7X9AET5_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AET5_9BURK)

HSP 1 Score: 174 bits (440), Expect = 8.450e-50
Identity = 89/179 (49.72%), Postives = 120/179 (67.04%), Query Frame = 1
Query:   37 DINSVYTVTGSVL-ISPIVLNLNGSGKLEASDGQWRPHPKVFSMTHRVFFDFYGNGFPVAMEWVGPNDGLLVKPKADGTVDGTCLFGTSTGYTNGYENLASLDDNMDGHLTGKELKGLSVWQDANGDAKVQPGELKSLESLGITELNIRHKDYKSTFTMKGKSCAMYDWWPNTFEIKKI 570
            +I+  YT T +   ++PIVLN++G+G L AS G+W     + S    VF DF+G+G PV MEWV P DGLLV+ K  G VDGTCLFG+  G+ +G+E LA+LD N DG LTG EL GL VWQDANG+A     E+KSL  LGITEL + H++Y+S F   G+   M+DW P   +++++
Sbjct:  178 NIHVTYTTTRTKYGVTPIVLNMDGTGVLGASAGRWNAPRDIMSGPLAVF-DFFGSGEPVLMEWVKPQDGLLVRLKERGPVDGTCLFGSGNGFADGFEELATLDRNRDGRLTGDELDGLFVWQDANGNAIAGISEVKSLADLGITELGLDHQNYESYFVRDGQRFKMWDWHPVVKQLQRV 355          
BLAST of mRNA_P-wetherbeei_contig19431.1.1 vs. uniprot
Match: A0A5S9ILE9_9BACT (FrpA/C n=1 Tax=Candidatus Uabimicrobium amorphum TaxID=2596890 RepID=A0A5S9ILE9_9BACT)

HSP 1 Score: 171 bits (434), Expect = 1.990e-48
Identity = 84/177 (47.46%), Postives = 119/177 (67.23%), Query Frame = 1
Query:   43 NSVYTVTGSVLISPIVLNLNGSGKLEASDGQWRPHPKVFSMTHRVFFDFYGNGFPVAMEWVGPNDGLLVKPKADGTVDGTCLFGTSTGYTNGYENLASLDDNMDGHLTGKELKGLSVWQDANGDAKVQPGELKSLESLGITELNIRHKDYKSTFTMKGKSCAMYDWWPNTFEIKKIK 573
            N V+ +    + +PIVL+++G  +LEAS G+W PH  +   T R F D  G+GFP  +EWVGPNDGLLV+    G ++G  LFG + G+ +G+E L+ LD+N D  L G EL+ LSVWQD N +AKV  GE+KSL+ L IT +N++H+ + S+FT  G+S  ++DW P T  +KKIK
Sbjct:  229 NGVFELNAFGVATPIVLDMDGDKRLEASGGKWLPHSSIEKDTRRAF-DINGDGFPEVIEWVGPNDGLLVQYDG-GQINGNHLFGDAGGFKHGFEKLSLLDENNDNVLNGAELETLSVWQDKNSNAKVDNGEVKSLQELNITSINVKHRLFTSSFTQNGESKMLWDWHPATHMVKKIK 403          
BLAST of mRNA_P-wetherbeei_contig19431.1.1 vs. uniprot
Match: A0A5S9ILF3_9BACT (FrpA/C n=1 Tax=Candidatus Uabimicrobium amorphum TaxID=2596890 RepID=A0A5S9ILF3_9BACT)

HSP 1 Score: 169 bits (428), Expect = 9.410e-48
Identity = 83/175 (47.43%), Postives = 118/175 (67.43%), Query Frame = 1
Query:   49 VYTVTGSVLISPIVLNLNGSGKLEASDGQWRPHPKVFSMTHRVFFDFYGNGFPVAMEWVGPNDGLLVKPKADGTVDGTCLFGTSTGYTNGYENLASLDDNMDGHLTGKELKGLSVWQDANGDAKVQPGELKSLESLGITELNIRHKDYKSTFTMKGKSCAMYDWWPNTFEIKKIK 573
            V+ V    + +PIVL+++G  +L+AS GQW PH  +   T R F D  G+GFP  +EWVGPNDGLLV+    G ++G  LFG + G+ +G+E L+ LD N DG LTG EL+ LSVWQD N +AKV  GE+++LE L IT + ++H+ + ++FT  G+S  ++DW P T  +KKIK
Sbjct:  209 VFEVNAFGVSTPIVLDMDGDKRLQASAGQWLPHKSIEKDTRRAF-DINGDGFPEVIEWVGPNDGLLVQYDG-GEINGNHLFGDAGGFKHGFEKLSLLDKNNDGVLTGAELETLSVWQDKNSNAKVDSGEVQTLEELNITSIGVKHRMFTASFTQNGESKMLWDWHPATHTVKKIK 381          
BLAST of mRNA_P-wetherbeei_contig19431.1.1 vs. uniprot
Match: A0A5S9IN08_9BACT (FrpA/C n=1 Tax=Candidatus Uabimicrobium amorphum TaxID=2596890 RepID=A0A5S9IN08_9BACT)

HSP 1 Score: 166 bits (419), Expect = 2.730e-46
Identity = 82/191 (42.93%), Postives = 123/191 (64.40%), Query Frame = 1
Query:    1 DVYRDIVTTTTNDINSVYTVTGSVLISPIVLNLNGSGKLEASDGQWRPHPKVFSMTHRVFFDFYGNGFPVAMEWVGPNDGLLVKPKADGTVDGTCLFGTSTGYTNGYENLASLDDNMDGHLTGKELKGLSVWQDANGDAKVQPGELKSLESLGITELNIRHKDYKSTFTMKGKSCAMYDWWPNTFEIKKIK 573
            D   +++  T      V+ V    + +PIVL+++G  +L+AS G+W PH  +   T R F D  G+GF   +EWVGPNDGLLV+    G ++G  LFG + G+ +G+E L+ LD N DG LTG EL+ LSVWQD NG+AK   GE++++E L IT + ++H+ + ++FT  G+S  ++DW P+T  +KKIK
Sbjct:  206 DYTNEVLLMTITTPEGVFEVNAFGVYTPIVLDMDGDKRLQASGGKWLPHSSIEKDTRRAF-DINGDGFAEVIEWVGPNDGLLVQYDG-GEINGNHLFGDAGGFKHGFEKLSLLDKNNDGVLTGAELETLSVWQDKNGNAKADSGEVQTVEELNITSIGVKHRMFTASFTQNGESKMLWDWHPSTHIVKKIK 394          
BLAST of mRNA_P-wetherbeei_contig19431.1.1 vs. uniprot
Match: A0A5S9IJ01_9BACT (FrpA/C n=1 Tax=Candidatus Uabimicrobium amorphum TaxID=2596890 RepID=A0A5S9IJ01_9BACT)

HSP 1 Score: 157 bits (398), Expect = 2.520e-45
Identity = 80/168 (47.62%), Postives = 117/168 (69.64%), Query Frame = 1
Query:   79 SPIVLNLNGSGKLEASDGQWRPH---PKVFSMTHRVFFDFYGNGFPVAMEWVGPNDGLLVKPKADGTVDGTCLFGTSTGYTNGYENLASLDDNMDGHLTGKELKGLSVWQDANGDAKVQPGELKSLESLGITELNIRHKDYKSTFTMKGKSCAMYDWWPNTFEIKKIK 573
            +P+VL+++G  KL+AS G+W PH   PK  + T    FD  G+ F   MEWVGPNDGLLV+ +  G ++G  LFG + G+ +G+E L+ LD N D  ++G+ELKGLSVWQD NG+AKV  GE+KS++SL IT ++++H+ + S+F   GK+ +M+DW P    IK+I+
Sbjct:   37 TPLVLDMDGDKKLQASGGKWLPHRFDPKSKTAT----FDINGDHFAEFMEWVGPNDGLLVRYEK-GEMNGLNLFGDAGGFKHGFEKLSVLDKNNDKAISGEELKGLSVWQDKNGNAKVDKGEIKSVQSLKITSISVKHRMFSSSFVQDGKTKSMWDWHPAIQIIKRIR 199          
BLAST of mRNA_P-wetherbeei_contig19431.1.1 vs. uniprot
Match: A0A5S9IUF1_9BACT (Serine protease n=2 Tax=Candidatus Uabimicrobium amorphum TaxID=2596890 RepID=A0A5S9IUF1_9BACT)

HSP 1 Score: 161 bits (408), Expect = 5.160e-43
Identity = 83/174 (47.70%), Postives = 112/174 (64.37%), Query Frame = 1
Query:   52 YTVTGSVLISPIVLNLNGSGKLEASDGQWRPHPKVFSMTHRVFFDFYGNGFPVAMEWVGPNDGLLVKPKADGTVDGTCLFGTSTGYTNGYENLASLDDNMDGHLTGKELKGLSVWQDANGDAKVQPGELKSLESLGITELNIRHKDYKSTFTMKGKSCAMYDWWPNTFEIKKIK 573
            Y +   V  SPIVL+++G GKLEAS+G + PH  V+     V FD  G+GF    EWVG NDGLL++  +   V G  LFG + G+ NGYE + SLD + +G L G+EL  LSVWQD N +AKV  GE++SL  L ITEL + H ++ S FT+ G+   M+DW+P+ F +KK K
Sbjct:  468 YELYDHVFTSPIVLDMDGDGKLEASNGVYLPH--VYKDGRVVEFDINGDGFVDLTEWVGKNDGLLIQYDSSKPVSGAQLFGDADGFINGYEKMRSLDADENGTLEGQELSTLSVWQDKNLNAKVDAGEIQSLADLKITELKVEHDNFVSQFTIDGEERTMWDWYPSVFRVKKRK 639          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19431.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Z9PPG7_9BACT3.150e-6346.63Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A7X9AEM2_9BURK8.400e-6250.51Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
A0A7X8XLK1_9BURK3.760e-6050.53Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
A0A1V5PEI7_9BACT3.660e-5049.70Uncharacterized protein n=1 Tax=bacterium ADurb.Bi... [more]
A0A7X9AET5_9BURK8.450e-5049.72Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
A0A5S9ILE9_9BACT1.990e-4847.46FrpA/C n=1 Tax=Candidatus Uabimicrobium amorphum T... [more]
A0A5S9ILF3_9BACT9.410e-4847.43FrpA/C n=1 Tax=Candidatus Uabimicrobium amorphum T... [more]
A0A5S9IN08_9BACT2.730e-4642.93FrpA/C n=1 Tax=Candidatus Uabimicrobium amorphum T... [more]
A0A5S9IJ01_9BACT2.520e-4547.62FrpA/C n=1 Tax=Candidatus Uabimicrobium amorphum T... [more]
A0A5S9IUF1_9BACT5.160e-4347.70Serine protease n=2 Tax=Candidatus Uabimicrobium a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19431contigP-wetherbeei_contig19431:146..736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog744980.TRICHSKD4_0705
PFAMsEF-hand_5
Model size591
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.93e-24
EggNOG OGsCOG2931@1|root,COG2931@2|Bacteria,1QZD0@1224|Proteobacteria,2US2T@28211|Alphaproteobacteria
DescriptionCOG2931, RTX toxins and related Ca2 -binding proteins
Cds size591
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186172.2122955-CDS-P-wetherbeei_contig19431:145..7361683186172.2122955-CDS-P-wetherbeei_contig19431:145..736Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19431 146..736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19431.1.1prot_P-wetherbeei_contig19431.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19431 146..736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19431.1.1

>prot_P-wetherbeei_contig19431.1.1 ID=prot_P-wetherbeei_contig19431.1.1|Name=mRNA_P-wetherbeei_contig19431.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=197bp
DVYRDIVTTTTNDINSVYTVTGSVLISPIVLNLNGSGKLEASDGQWRPHP
KVFSMTHRVFFDFYGNGFPVAMEWVGPNDGLLVKPKADGTVDGTCLFGTS
TGYTNGYENLASLDDNMDGHLTGKELKGLSVWQDANGDAKVQPGELKSLE
SLGITELNIRHKDYKSTFTMKGKSCAMYDWWPNTFEIKKIKIKPSV*
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mRNA from alignment at P-wetherbeei_contig19431:146..736-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19431.1.1 ID=mRNA_P-wetherbeei_contig19431.1.1|Name=mRNA_P-wetherbeei_contig19431.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=591bp|location=Sequence derived from alignment at P-wetherbeei_contig19431:146..736- (Phaeothamnion wetherbeei SAG_119_79)
GACGTTTACCGCGACATCGTCACCACGACCACAAACGATATCAATAGCGT CTACACGGTGACCGGCTCGGTTCTCATCAGCCCCATCGTTCTAAATCTGA ACGGTTCGGGTAAGCTCGAGGCCTCCGACGGTCAGTGGCGTCCCCATCCT AAAGTCTTTTCGATGACGCACCGCGTGTTCTTCGACTTCTACGGCAATGG GTTCCCCGTCGCTATGGAGTGGGTTGGACCCAATGATGGGCTCCTCGTTA AGCCCAAAGCAGACGGAACGGTCGACGGCACGTGCCTCTTTGGCACCAGC ACGGGCTATACCAACGGCTACGAGAACCTCGCCAGCCTCGACGACAATAT GGATGGCCATCTGACGGGCAAAGAGCTCAAAGGCCTATCCGTTTGGCAGG ACGCCAACGGTGACGCCAAGGTTCAGCCGGGCGAGTTGAAATCGCTGGAG TCACTGGGAATCACCGAGCTCAACATCCGTCACAAAGACTACAAGAGCAC CTTCACCATGAAGGGCAAGAGCTGCGCGATGTATGACTGGTGGCCCAATA CCTTCGAAATCAAAAAGATCAAAATCAAGCCCTCAGTCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19431:146..736-

>mRNA_P-wetherbeei_contig19431.1.1 ID=mRNA_P-wetherbeei_contig19431.1.1|Name=mRNA_P-wetherbeei_contig19431.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=591bp|location=Sequence derived from alignment at P-wetherbeei_contig19431:146..736- (Phaeothamnion wetherbeei SAG_119_79)
GACGTTTACCGCGACATCGTCACCACGACCACAAACGATATCAATAGCGT
CTACACGGTGACCGGCTCGGTTCTCATCAGCCCCATCGTTCTAAATCTGA
ACGGTTCGGGTAAGCTCGAGGCCTCCGACGGTCAGTGGCGTCCCCATCCT
AAAGTCTTTTCGATGACGCACCGCGTGTTCTTCGACTTCTACGGCAATGG
GTTCCCCGTCGCTATGGAGTGGGTTGGACCCAATGATGGGCTCCTCGTTA
AGCCCAAAGCAGACGGAACGGTCGACGGCACGTGCCTCTTTGGCACCAGC
ACGGGCTATACCAACGGCTACGAGAACCTCGCCAGCCTCGACGACAATAT
GGATGGCCATCTGACGGGCAAAGAGCTCAAAGGCCTATCCGTTTGGCAGG
ACGCCAACGGTGACGCCAAGGTTCAGCCGGGCGAGTTGAAATCGCTGGAG
TCACTGGGAATCACCGAGCTCAACATCCGTCACAAAGACTACAAGAGCAC
CTTCACCATGAAGGGCAAGAGCTGCGCGATGTATGACTGGTGGCCCAATA
CCTTCGAAATCAAAAAGATCAAAATCAAGCCCTCAGTCTAA
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