mRNA_P-wetherbeei_contig1941.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1941.2.1
Unique NamemRNA_P-wetherbeei_contig1941.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1941.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1941contigP-wetherbeei_contig1941:3745..6177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1954
Hectar predicted targeting categoryother localisation
Exons3
Cds size1479
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186171.4986713-UTR-P-wetherbeei_contig1941:3744..41951683186171.4986713-UTR-P-wetherbeei_contig1941:3744..4195Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1941 3745..4195 -
1683186171.5338097-UTR-P-wetherbeei_contig1941:6153..61771683186171.5338097-UTR-P-wetherbeei_contig1941:6153..6177Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1941 6154..6177 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186171.5084124-CDS-P-wetherbeei_contig1941:4195..45561683186171.5084124-CDS-P-wetherbeei_contig1941:4195..4556Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1941 4196..4556 -
1683186171.5168333-CDS-P-wetherbeei_contig1941:4727..56961683186171.5168333-CDS-P-wetherbeei_contig1941:4727..5696Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1941 4728..5696 -
1683186171.5252402-CDS-P-wetherbeei_contig1941:6004..61531683186171.5252402-CDS-P-wetherbeei_contig1941:6004..6153Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1941 6005..6153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1941.2.1prot_P-wetherbeei_contig1941.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1941 4196..6153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1941.2.1

>prot_P-wetherbeei_contig1941.2.1 ID=prot_P-wetherbeei_contig1941.2.1|Name=mRNA_P-wetherbeei_contig1941.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=493bp
MRTPQEGVRYSLEAPPQRFGFLESMAMYVSKLNPKHRADLAEYFDQLADE
FAGEAASECDAFQQQLDNPEAGEEEEIPGAWLLYFSFRAMLDETVDGAPL
GARKRTAARKTVAAAGGATPGKGAGRDQGGMRGESGGSAKRGARAGIVGV
SAAGDETGSAKGRWISRRPRNGAVAAGAAGFGRKGGGKCLAADRGPTQSP
ASSHKAGASPVSNRKASPSPAAKRGGSGAAASAPSSAKAAAPPRGLLPMQ
RDYDDEVDGGPLLPTPTPTQEEYDSGSNGGVGRGSGGGGEEAPLLSLDES
RGGGDDEGDEEEEDEGPPLLPSQTDDEREEDAGVCISPLGGLAGAGTSKG
KERARAAASPSGSAGRGYGKAGSKYSQGSSRLSVVSDLFPVAEEQDAGSE
AEETPAAAGKRKRQSSGGAASGGGGSSSSGSGGGASAGARKATAAAAVAD
AAKPAYDGEADASDDDGSDSGDMFEDLGGAASATSKKSKLLP*
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mRNA from alignment at P-wetherbeei_contig1941:3745..6177-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1941.2.1 ID=mRNA_P-wetherbeei_contig1941.2.1|Name=mRNA_P-wetherbeei_contig1941.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2433bp|location=Sequence derived from alignment at P-wetherbeei_contig1941:3745..6177- (Phaeothamnion wetherbeei SAG_119_79)
CCGTCGTCGCCCTCACGGCCACTTATGCGCACGCCGCAGGAGGGCGTGCG
GTACTCGCTGGAGGCGCCTCCACAGCGGTTCGGCTTCCTGGAGAGCATGG
CCATGTACGTCAGCAAGCTCAACCCCAAGCACCGGGCCGACCTCGCCGAG
TATTTCGACCAGCTTGCGGACGAGTGAGCTTCTCCTTTTGTCCCGTCTTC
TAACGGTGGTGGCGACAGCAGTTTTGATGGCGGCGGAGGCTGCCCTGGCA
GCCGGCGGACTCGGCGGCGGTGGCGGCTGCGAGCTGGGTTGTGAAGGGGC
TTGGAGCCAAGGTTGTGGATTTGGCCAAAGGTCGCCATATGGATTTTTGG
GGCCTCATGCTGATGCGTGTTTGCTCCACCATTTTGCGGTCTTATGGGAC
TTCGTGCTCGCTACAGTTGCTCTGATCCTCTTCATGCTGTGACGTCTTCT
TCCGTGCGTCCGTGTATCTCTATTTTAAAAGGTTTGCGGGCGAGGCGGCC
TCTGAATGCGACGCCTTCCAGCAGCAGCTGGACAACCCCGAGGCCGGCGA
GGAGGAAGAGATCCCCGGGGCGTGGCTGCTCTATTTCTCCTTCCGGGCCA
TGCTGGATGAGACAGTGGACGGAGCGCCACTAGGCGCCCGGAAGCGCACG
GCAGCGCGGAAGACGGTGGCGGCGGCCGGCGGAGCAACGCCGGGCAAGGG
CGCGGGCCGCGACCAAGGCGGCATGCGCGGAGAAAGCGGCGGGAGCGCGA
AGCGTGGCGCGCGCGCTGGGATTGTGGGCGTGTCAGCCGCTGGCGACGAG
ACCGGCTCGGCGAAGGGGCGCTGGATCAGCCGCAGGCCTCGCAACGGCGC
CGTGGCGGCTGGCGCCGCCGGCTTCGGCCGCAAGGGCGGCGGCAAGTGCC
TCGCCGCCGACCGCGGACCGACGCAGAGCCCCGCATCCAGCCACAAGGCC
GGCGCAAGCCCCGTGTCCAACCGCAAGGCCAGCCCGAGCCCGGCCGCCAA
GCGCGGCGGCAGCGGCGCTGCCGCCTCCGCCCCGTCTTCGGCAAAGGCGG
CGGCGCCGCCGCGGGGTCTGCTTCCGATGCAGCGTGATTACGACGACGAG
GTGGACGGAGGGCCGCTGCTGCCGACGCCGACGCCGACGCAGGAGGAGTA
CGACAGCGGCAGCAATGGCGGCGTCGGTCGGGGCAGCGGCGGCGGCGGCG
AGGAGGCGCCGCTGCTTTCGCTCGACGAGAGCCGTGGCGGCGGCGACGAC
GAGGGTGACGAGGAGGAGGAGGACGAAGGCCCGCCGCTGCTGCCGTCGCA
GACTGACGACGAGCGAGAAGAGGACGCCGGCGTCTGTATTTCGCCGCTGG
GGGGCTTGGCGGGCGCCGGCACGAGCAAGGGCAAGGAGCGCGCTCGGGCT
GCCGCCAGCCCCTCGGGCAGCGCCGGCCGAGGCTACGGAAAGGCAGGGAG
GTGAGCTGTTGGACTGGTGGCTGATTGTTGGCTTTTTATCTGCTTTCCAG
GTTCCTCGCTTGTGGCATCTTTATGGAAAAGCAATCGACATGTCTGGTAC
AATAAACCAGCTCGCCCGGAAAATCTTGTAAAAATCTTTGCTCCGCTTGC
TCTATTCTCTCCTGCGTGCAGCAAGTACAGCCAGGGGTCGTCTCGCCTGA
GCGTCGTCAGCGACCTCTTCCCGGTGGCGGAGGAGCAGGACGCGGGGAGT
GAGGCCGAAGAGACCCCCGCTGCCGCCGGCAAGCGCAAGCGCCAGAGCTC
GGGCGGTGCCGCAAGTGGCGGCGGCGGAAGCAGCTCGAGCGGCAGCGGCG
GTGGCGCTTCCGCGGGCGCCCGAAAGGCCACCGCGGCGGCGGCGGTGGCG
GACGCGGCGAAGCCCGCGTACGACGGGGAGGCGGATGCAAGCGACGACGA
TGGCAGCGACAGCGGAGACATGTTTGAGGACCTCGGAGGGGCGGCGTCGG
CGACCAGCAAGAAGTCCAAGCTGCTGCCGTGAAGAGAAGAAGCTGAGGAC
GGGTTTTGCGGACGAAGAGGCTGCGCTTTCTCCGAAGCGGAGGAGCAGAG
GGATGGCAGCGGCGGAGCGACCAAGTCGGCGGCGGCAAAGGTAGCGGCGG
AGGTAGCGGCGCCGACCGCTCCGCTGGCGGCGGCGATGGAGGGGGCGGCA
CAAGCACTTGGTGTCTTCGAGTTGGGGTGGGAAGGGCTCCTGCTGCGCCG
GACGGCGCTAAAGACGGCAGCGGTTGTCGCGCGGTAGCTTCCGGATGTCC
ATGGAATGCAGCGGGTCGACGCGAAGGTTCGGTCTACTGTGGGGACGACG
GTATCAGTTGTTGAGACGGAAGGCGCGGCTCTGACATGGAACGCTGGCAT
TATCGGAACATTGGCAATATCGAGGCTCCGTCGCCAGCAGCGGCCGGAGA
GAGGAAAGGCATGCTCGTTTCGCGATCTATAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1941:3745..6177-

>mRNA_P-wetherbeei_contig1941.2.1 ID=mRNA_P-wetherbeei_contig1941.2.1|Name=mRNA_P-wetherbeei_contig1941.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1479bp|location=Sequence derived from alignment at P-wetherbeei_contig1941:3745..6177- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCACGCCGCAGGAGGGCGTGCGGTACTCGCTGGAGGCGCCTCCACA
GCGGTTCGGCTTCCTGGAGAGCATGGCCATGTACGTCAGCAAGCTCAACC
CCAAGCACCGGGCCGACCTCGCCGAGTATTTCGACCAGCTTGCGGACGAG
TTTGCGGGCGAGGCGGCCTCTGAATGCGACGCCTTCCAGCAGCAGCTGGA
CAACCCCGAGGCCGGCGAGGAGGAAGAGATCCCCGGGGCGTGGCTGCTCT
ATTTCTCCTTCCGGGCCATGCTGGATGAGACAGTGGACGGAGCGCCACTA
GGCGCCCGGAAGCGCACGGCAGCGCGGAAGACGGTGGCGGCGGCCGGCGG
AGCAACGCCGGGCAAGGGCGCGGGCCGCGACCAAGGCGGCATGCGCGGAG
AAAGCGGCGGGAGCGCGAAGCGTGGCGCGCGCGCTGGGATTGTGGGCGTG
TCAGCCGCTGGCGACGAGACCGGCTCGGCGAAGGGGCGCTGGATCAGCCG
CAGGCCTCGCAACGGCGCCGTGGCGGCTGGCGCCGCCGGCTTCGGCCGCA
AGGGCGGCGGCAAGTGCCTCGCCGCCGACCGCGGACCGACGCAGAGCCCC
GCATCCAGCCACAAGGCCGGCGCAAGCCCCGTGTCCAACCGCAAGGCCAG
CCCGAGCCCGGCCGCCAAGCGCGGCGGCAGCGGCGCTGCCGCCTCCGCCC
CGTCTTCGGCAAAGGCGGCGGCGCCGCCGCGGGGTCTGCTTCCGATGCAG
CGTGATTACGACGACGAGGTGGACGGAGGGCCGCTGCTGCCGACGCCGAC
GCCGACGCAGGAGGAGTACGACAGCGGCAGCAATGGCGGCGTCGGTCGGG
GCAGCGGCGGCGGCGGCGAGGAGGCGCCGCTGCTTTCGCTCGACGAGAGC
CGTGGCGGCGGCGACGACGAGGGTGACGAGGAGGAGGAGGACGAAGGCCC
GCCGCTGCTGCCGTCGCAGACTGACGACGAGCGAGAAGAGGACGCCGGCG
TCTGTATTTCGCCGCTGGGGGGCTTGGCGGGCGCCGGCACGAGCAAGGGC
AAGGAGCGCGCTCGGGCTGCCGCCAGCCCCTCGGGCAGCGCCGGCCGAGG
CTACGGAAAGGCAGGGAGCAAGTACAGCCAGGGGTCGTCTCGCCTGAGCG
TCGTCAGCGACCTCTTCCCGGTGGCGGAGGAGCAGGACGCGGGGAGTGAG
GCCGAAGAGACCCCCGCTGCCGCCGGCAAGCGCAAGCGCCAGAGCTCGGG
CGGTGCCGCAAGTGGCGGCGGCGGAAGCAGCTCGAGCGGCAGCGGCGGTG
GCGCTTCCGCGGGCGCCCGAAAGGCCACCGCGGCGGCGGCGGTGGCGGAC
GCGGCGAAGCCCGCGTACGACGGGGAGGCGGATGCAAGCGACGACGATGG
CAGCGACAGCGGAGACATGTTTGAGGACCTCGGAGGGGCGGCGTCGGCGA
CCAGCAAGAAGTCCAAGCTGCTGCCGTGA
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