mRNA_P-wetherbeei_contig1940.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1940.2.1
Unique NamemRNA_P-wetherbeei_contig1940.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1940.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1940contigP-wetherbeei_contig1940:1847..4483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog45351.EDO49717
Preferred nameN4BP2
PFAMsAAA_33,CUE,DUF1771,Smr
Model size2637
Max annot lvl33208|Metazoa
KEGG koko:K15720
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005524,GO:0006139,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0017076,GO:0019205,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0046404,GO:0046483,GO:0051731,GO:0051733,GO:0051734,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363
Exons1
Evalue1.57e-07
EggNOG OGsKOG2401@1|root,KOG2401@2759|Eukaryota,38C89@33154|Opisthokonta,3BF8N@33208|Metazoa
DescriptionDUF1771
Cds size2082
COG categoryL
BRITEko00000,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186171.2811928-UTR-P-wetherbeei_contig1940:1846..19671683186171.2811928-UTR-P-wetherbeei_contig1940:1846..1967Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1940 1847..1967 -
1683186171.2978957-UTR-P-wetherbeei_contig1940:4049..44831683186171.2978957-UTR-P-wetherbeei_contig1940:4049..4483Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1940 4050..4483 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186171.2901435-CDS-P-wetherbeei_contig1940:1967..40491683186171.2901435-CDS-P-wetherbeei_contig1940:1967..4049Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1940 1968..4049 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1940.2.1prot_P-wetherbeei_contig1940.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1940 1968..4049 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1940.2.1

>prot_P-wetherbeei_contig1940.2.1 ID=prot_P-wetherbeei_contig1940.2.1|Name=mRNA_P-wetherbeei_contig1940.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=694bp
MLSPNQCRRQTSLALMLKSAGEVSSAAGMDQAAAVAAALPGTENAWALFS
RMFKRLLPAEFLLDIFFSALGDICVAVDVADEAVAGSIAVDEEIDNDADA
ESAAAAAAAASEERYGPSISQSFGRDGSPPRTASLSPSRSELSLIAARAD
TAATPLRRATARRTAAEELADAFPDADEAMVAAVLARCCGNVSAAAALLL
DGVEIGSVPPAWGRRPRRGKRLDVFACAGDQEGSSGGTSSSAVRSSWAQA
ATTGGELMPTLAGAAGSRVSPAFVAAPAAAAALPSTDSFPPLPLARKLTP
ALARLTATPQRIAAAGGTLLPWDEQLVELRHRYRGQAPPDLVDEVLDLCS
YSIDDARAILDAMLNATYFEAAQATAADDVPVEAPPPRYTTATGTDRKRL
ADNSDMWGGRERRNDGGSDGGSGGNDDGGSSESGGSSSGLMSGASIQNLR
LDADREFKLMRESHVKAAAEFRRGRKVGGPAAASLTLASAAACKRRMLAA
NAAAAVACFRLYNPHVRLALDAAAKDGELVVAAVAAPTAADFAQSNLSGI
DGSSCGGSSCGDGGGGSDAVASAAAALDWRCVAVDFHGLRVDEARQALDS
LLSLLTGSACLSKGTRTNLSRVRHINVICGRGKHSAGGRAKLLPAVEQYC
QAQEYRFVALCAGTLRITLPTCRGVMGGDLKRPSAPQYRYRSR*
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mRNA from alignment at P-wetherbeei_contig1940:1847..4483-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1940.2.1 ID=mRNA_P-wetherbeei_contig1940.2.1|Name=mRNA_P-wetherbeei_contig1940.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2637bp|location=Sequence derived from alignment at P-wetherbeei_contig1940:1847..4483- (Phaeothamnion wetherbeei SAG_119_79)
CCACAAGGGGATATTAAATATTGAAGCGCCACAAGCCTACTTCGGCTGTA
ACGTATATACCAGTCGCCATCCCCTCTTTTTTGCGGTGCGAAGGATGTAG
ACCAACATGTTGCCGCCCACGGATAAACCAGGAGAAAGGGAGCTTCAAGC
ACTGTCGCCTTTCCATTCAAGCATTGTCGCCTTTCAATTCAAGCACTGTT
GCCTTTTCGCCAAAGTTTTCCGAAGGCGTCAGCTCTTGTTTTGACCGCGA
AAGCTGGGTTGCTCACTAATTCATTGTTCCTCAATGCCCGTAAGGCTCTT
CGCTTCCTTCCGGCCCCCGTTCTGCCATCGAACTTTTTAGGTGTAACAGA
TGGCTGGTACCACACGAGAGGTATGGCCTGCTCTTGCGGTGGAGCGACGT
AGGGAGAGTTTGAGGCTGTTTGTCGTTAGCCTTGATGCTTTCGCCTAACC
AGTGCCGGAGACAGACGTCGCTAGCCTTGATGCTCAAGTCCGCCGGCGAA
GTCAGCTCTGCGGCTGGCATGGACCAGGCTGCGGCCGTAGCGGCCGCCCT
GCCAGGCACCGAAAACGCCTGGGCATTATTTTCAAGAATGTTCAAGCGCC
TTCTGCCCGCCGAGTTCCTCCTGGACATTTTCTTCAGCGCGTTGGGCGAC
ATTTGTGTCGCCGTGGACGTCGCCGATGAGGCGGTCGCGGGCAGCATTGC
TGTCGACGAGGAAATCGACAATGACGCCGATGCTGAGTCGGCGGCGGCCG
CGGCTGCCGCGGCCTCAGAGGAACGTTACGGGCCTTCCATCTCGCAGTCC
TTCGGCCGGGACGGCTCGCCGCCGCGCACGGCTTCCCTCTCGCCGTCCCG
CTCGGAGCTCTCACTCATCGCTGCTCGGGCAGACACTGCTGCGACGCCGC
TGCGGCGGGCGACAGCGCGGCGGACCGCGGCGGAGGAGCTGGCGGACGCG
TTCCCGGATGCGGATGAGGCGATGGTGGCGGCAGTGCTCGCCCGCTGCTG
CGGGAACGTATCTGCGGCTGCGGCGCTTCTTTTGGATGGCGTCGAAATCG
GAAGCGTGCCACCTGCGTGGGGGCGCAGGCCGAGGCGTGGAAAGCGGCTC
GACGTTTTTGCCTGTGCTGGCGACCAAGAGGGCAGCAGCGGCGGCACTTC
TTCGTCGGCCGTCCGAAGCTCGTGGGCTCAGGCAGCAACAACAGGGGGGG
AATTGATGCCGACCTTGGCGGGAGCGGCAGGCTCACGGGTCTCTCCGGCG
TTTGTGGCCGCTCCCGCGGCGGCGGCGGCTCTTCCATCCACAGATTCATT
CCCGCCGTTGCCGCTGGCGCGCAAGCTGACGCCGGCGCTCGCACGGTTGA
CTGCGACGCCGCAGCGGATTGCGGCGGCAGGCGGCACTCTACTGCCGTGG
GACGAACAGCTGGTCGAGCTGCGGCACCGCTACAGGGGCCAGGCCCCGCC
GGACCTCGTTGACGAAGTTCTCGACCTGTGCTCCTATTCGATAGACGACG
CCCGCGCCATCCTCGACGCCATGCTTAATGCTACCTATTTTGAGGCGGCA
CAAGCGACAGCGGCGGACGATGTTCCTGTCGAGGCGCCGCCGCCACGTTA
CACCACCGCTACAGGAACCGACCGCAAGCGTTTGGCGGACAACAGCGACA
TGTGGGGAGGCCGGGAAAGGAGGAATGATGGCGGCAGCGACGGCGGCAGC
GGCGGCAACGACGACGGCGGTAGCAGTGAGTCTGGCGGCAGCAGCAGCGG
CTTGATGAGTGGCGCCTCCATTCAAAACCTGCGGCTCGATGCGGATCGTG
AATTCAAGCTCATGCGCGAAAGCCATGTGAAGGCGGCCGCAGAGTTTCGC
CGTGGCCGCAAGGTCGGCGGCCCCGCCGCCGCGTCGCTGACGCTGGCCAG
CGCCGCCGCCTGCAAGAGGCGCATGCTCGCCGCCAACGCCGCCGCCGCCG
TGGCGTGCTTCCGCCTCTACAACCCCCACGTTCGCCTGGCGCTGGACGCC
GCCGCGAAGGACGGAGAGCTCGTCGTCGCCGCGGTTGCCGCCCCGACGGC
GGCCGACTTTGCGCAGAGTAACTTGTCTGGAATCGATGGCAGCAGTTGTG
GCGGCAGCAGTTGCGGCGACGGCGGCGGCGGCAGCGACGCCGTTGCTTCC
GCCGCCGCAGCGTTGGACTGGCGGTGCGTTGCCGTGGATTTTCACGGTCT
GCGCGTCGACGAGGCGCGGCAGGCCTTAGACTCTCTTCTGTCCCTCCTTA
CCGGTTCCGCTTGTCTTTCCAAAGGAACCCGGACGAACTTGTCGCGGGTT
CGTCACATCAACGTCATTTGCGGACGGGGAAAGCACAGCGCGGGCGGGCG
GGCAAAGCTGCTGCCGGCGGTGGAGCAGTATTGTCAGGCACAGGAATACC
GTTTCGTGGCATTGTGCGCGGGTACTCTGAGGATCACACTACCGACGTGC
CGTGGCGTCATGGGAGGTGACCTCAAAAGGCCCAGCGCTCCTCAGTATAG
ATACCGTAGCCGCTGAGACATTTACAGCAATTAACTGCTAACTTTTCGAT
AATTCAATTGAACGCCCCCTTTCAGAAAACAAGGCTGCAATCTTAGGTGC
CGCAGTTAGTTAATAACTTATTCAAAATTCAATGGTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1940:1847..4483-

>mRNA_P-wetherbeei_contig1940.2.1 ID=mRNA_P-wetherbeei_contig1940.2.1|Name=mRNA_P-wetherbeei_contig1940.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2082bp|location=Sequence derived from alignment at P-wetherbeei_contig1940:1847..4483- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTTCGCCTAACCAGTGCCGGAGACAGACGTCGCTAGCCTTGATGCT
CAAGTCCGCCGGCGAAGTCAGCTCTGCGGCTGGCATGGACCAGGCTGCGG
CCGTAGCGGCCGCCCTGCCAGGCACCGAAAACGCCTGGGCATTATTTTCA
AGAATGTTCAAGCGCCTTCTGCCCGCCGAGTTCCTCCTGGACATTTTCTT
CAGCGCGTTGGGCGACATTTGTGTCGCCGTGGACGTCGCCGATGAGGCGG
TCGCGGGCAGCATTGCTGTCGACGAGGAAATCGACAATGACGCCGATGCT
GAGTCGGCGGCGGCCGCGGCTGCCGCGGCCTCAGAGGAACGTTACGGGCC
TTCCATCTCGCAGTCCTTCGGCCGGGACGGCTCGCCGCCGCGCACGGCTT
CCCTCTCGCCGTCCCGCTCGGAGCTCTCACTCATCGCTGCTCGGGCAGAC
ACTGCTGCGACGCCGCTGCGGCGGGCGACAGCGCGGCGGACCGCGGCGGA
GGAGCTGGCGGACGCGTTCCCGGATGCGGATGAGGCGATGGTGGCGGCAG
TGCTCGCCCGCTGCTGCGGGAACGTATCTGCGGCTGCGGCGCTTCTTTTG
GATGGCGTCGAAATCGGAAGCGTGCCACCTGCGTGGGGGCGCAGGCCGAG
GCGTGGAAAGCGGCTCGACGTTTTTGCCTGTGCTGGCGACCAAGAGGGCA
GCAGCGGCGGCACTTCTTCGTCGGCCGTCCGAAGCTCGTGGGCTCAGGCA
GCAACAACAGGGGGGGAATTGATGCCGACCTTGGCGGGAGCGGCAGGCTC
ACGGGTCTCTCCGGCGTTTGTGGCCGCTCCCGCGGCGGCGGCGGCTCTTC
CATCCACAGATTCATTCCCGCCGTTGCCGCTGGCGCGCAAGCTGACGCCG
GCGCTCGCACGGTTGACTGCGACGCCGCAGCGGATTGCGGCGGCAGGCGG
CACTCTACTGCCGTGGGACGAACAGCTGGTCGAGCTGCGGCACCGCTACA
GGGGCCAGGCCCCGCCGGACCTCGTTGACGAAGTTCTCGACCTGTGCTCC
TATTCGATAGACGACGCCCGCGCCATCCTCGACGCCATGCTTAATGCTAC
CTATTTTGAGGCGGCACAAGCGACAGCGGCGGACGATGTTCCTGTCGAGG
CGCCGCCGCCACGTTACACCACCGCTACAGGAACCGACCGCAAGCGTTTG
GCGGACAACAGCGACATGTGGGGAGGCCGGGAAAGGAGGAATGATGGCGG
CAGCGACGGCGGCAGCGGCGGCAACGACGACGGCGGTAGCAGTGAGTCTG
GCGGCAGCAGCAGCGGCTTGATGAGTGGCGCCTCCATTCAAAACCTGCGG
CTCGATGCGGATCGTGAATTCAAGCTCATGCGCGAAAGCCATGTGAAGGC
GGCCGCAGAGTTTCGCCGTGGCCGCAAGGTCGGCGGCCCCGCCGCCGCGT
CGCTGACGCTGGCCAGCGCCGCCGCCTGCAAGAGGCGCATGCTCGCCGCC
AACGCCGCCGCCGCCGTGGCGTGCTTCCGCCTCTACAACCCCCACGTTCG
CCTGGCGCTGGACGCCGCCGCGAAGGACGGAGAGCTCGTCGTCGCCGCGG
TTGCCGCCCCGACGGCGGCCGACTTTGCGCAGAGTAACTTGTCTGGAATC
GATGGCAGCAGTTGTGGCGGCAGCAGTTGCGGCGACGGCGGCGGCGGCAG
CGACGCCGTTGCTTCCGCCGCCGCAGCGTTGGACTGGCGGTGCGTTGCCG
TGGATTTTCACGGTCTGCGCGTCGACGAGGCGCGGCAGGCCTTAGACTCT
CTTCTGTCCCTCCTTACCGGTTCCGCTTGTCTTTCCAAAGGAACCCGGAC
GAACTTGTCGCGGGTTCGTCACATCAACGTCATTTGCGGACGGGGAAAGC
ACAGCGCGGGCGGGCGGGCAAAGCTGCTGCCGGCGGTGGAGCAGTATTGT
CAGGCACAGGAATACCGTTTCGTGGCATTGTGCGCGGGTACTCTGAGGAT
CACACTACCGACGTGCCGTGGCGTCATGGGAGGTGACCTCAAAAGGCCCA
GCGCTCCTCAGTATAGATACCGTAGCCGCTGA
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