mRNA_P-wetherbeei_contig1940.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1940.1.1
Unique NamemRNA_P-wetherbeei_contig1940.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1940.1.1 vs. uniprot
Match: A0A6H5K0E6_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0E6_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 4.900e-20
Identity = 91/273 (33.33%), Postives = 132/273 (48.35%), Query Frame = 3 
Query:   21 VVRDAEAMSELVMLELISETLGPEFAQLHLLHPPAYAVCMHGWLWKLHDGGGMLIKRTKHYYALAGHLLYEFSPIVDGDAGPGGXXXXXXXXXXXXXXXXXXXXXXXXXXAGPSYCLTMVLPLVGLAVLQGRFEGHAHALRIIRSDGRNGNAE----LPL--AVGKPGGVLRPARRPEVIFLAERADDQRAWQQWLERCTMDSHAAPTRPERRGDXXXXXXXXXXXXXWGDGGEEG------YRHLYVTCEGVEEDEGVALYQWLMTALSERM 803
            VV D + MSEL +L  +  ++GPEFAQ+HL+ P  Y++C+ G L ++H  G +L    +H+YA+A  +LYE++P  D  A P G    XXXXXXXXX              G  Y LT VLPL G+++  G+ EG+ H+L+I R+    G +     LP+  A  +   VL      EV+  A+     R W  WL        ++P+                     G GG+E       YR ++V CE +E  E  AL   L  A+  R+
Sbjct: 2758 VVCDPDTMSELAILACLQGSMGPEFAQIHLVRPHKYSICIQGHLIRMHSSG-LLTTLERHWYAVANGILYEYTPRKD--ALPDGSNTPXXXXXXXXXVQGGGATARRP---GYPYTLTTVLPLSGVSIKTGKIEGNEHSLKIFRAPKPGGRSRDAGVLPVVTASARLASVLEEKTVDEVVLQADSHASLREWVNWL----TSQSSSPS-------------------GGGLGGQEELLERHRYRSVFVGCESLEAAEARALCDGLRGAVFTRL 3001
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BLAST of mRNA_P-wetherbeei_contig1940.1.1 vs. uniprot
Match: D8LME1_ECTSI (Similarities to vacuolar protein sorting-associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME1_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 5.270e-11
Identity = 52/122 (42.62%), Postives = 74/122 (60.66%), Query Frame = 3 
Query:   78 TLGPEFAQLHLLHPPAYAVCMHGWLWKLHDGGGMLIKRTKHYYALAGHLLYEFSPIVDGDAGPGGXXXXXXXXXXXXXXXXXXXXXXXXXXAGPSYCLTMVLPLVGLAVLQGRFEGHAHALR 443
            ++GPEFAQ+HL+ P  Y++C+ G L ++H  G +L    +H+YA+A  +LYE++P  D  A P G    XXXXXXXXX              G  Y LT VLPL G+++  GR EG+ H+L+
Sbjct:  635 SMGPEFAQIHLVRPHKYSICLQGHLIRMHSSG-LLTTLERHWYAVANGILYEYTPRKD--ALPDGSNTPXXXXXXXXXVKGGGATARRP---GYPYTLTTVLPLSGVSIKTGRIEGNEHSLK 750
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1940.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0E6_9PHAE4.900e-2033.33PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LME1_ECTSI5.270e-1142.62Similarities to vacuolar protein sorting-associate... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1940contigP-wetherbeei_contig1940:790..1886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LME1
PFAMsChorein_N,PDZ_2,SHR-BD,VPS13,VPS13_C
Model size1097
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.2e-12
EggNOG OGsCOG5043@1|root,KOG1809@2759|Eukaryota
Descriptionregulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
Cds size765
COG categoryU
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186171.3252978-UTR-P-wetherbeei_contig1940:789..8301683186171.3252978-UTR-P-wetherbeei_contig1940:789..830Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1940 790..830 +
1683186171.3454547-UTR-P-wetherbeei_contig1940:1595..18861683186171.3454547-UTR-P-wetherbeei_contig1940:1595..1886Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1940 1596..1886 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186171.3376498-CDS-P-wetherbeei_contig1940:830..15951683186171.3376498-CDS-P-wetherbeei_contig1940:830..1595Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1940 831..1595 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1940.1.1prot_P-wetherbeei_contig1940.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1940 831..1595 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1940.1.1

>prot_P-wetherbeei_contig1940.1.1 ID=prot_P-wetherbeei_contig1940.1.1|Name=mRNA_P-wetherbeei_contig1940.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=255bp
MSELVMLELISETLGPEFAQLHLLHPPAYAVCMHGWLWKLHDGGGMLIKR
TKHYYALAGHLLYEFSPIVDGDAGPGGGNSGGSSGGSSSGGGGGGGGGSG
AAAAGPSYCLTMVLPLVGLAVLQGRFEGHAHALRIIRSDGRNGNAELPLA
VGKPGGVLRPARRPEVIFLAERADDQRAWQQWLERCTMDSHAAPTRPERR
GDDGGGGGRSAGGGGWGDGGEEGYRHLYVTCEGVEEDEGVALYQWLMTAL
SERM*
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mRNA from alignment at P-wetherbeei_contig1940:790..1886+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1940.1.1 ID=mRNA_P-wetherbeei_contig1940.1.1|Name=mRNA_P-wetherbeei_contig1940.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1097bp|location=Sequence derived from alignment at P-wetherbeei_contig1940:790..1886+ (Phaeothamnion wetherbeei SAG_119_79)
CATCTGAGCCGGAACGGCCGGTGGTGCGCGACGCCGAGGCCATGTCGGAG
CTGGTGATGCTGGAGCTAATTTCTGAGACGCTGGGGCCCGAGTTCGCGCA
GCTGCACCTGCTGCACCCGCCGGCGTATGCCGTCTGCATGCACGGCTGGC
TCTGGAAGCTCCATGACGGCGGCGGCATGCTCATCAAGCGCACCAAGCAC
TACTATGCGCTGGCCGGCCACCTGCTGTACGAGTTTAGTCCGATCGTGGA
CGGCGACGCCGGCCCCGGCGGCGGGAATAGCGGCGGGAGCAGCGGTGGTA
GCAGTAGCGGCGGTGGCGGTGGCGGTGGCGGCGGGTCCGGTGCCGCGGCG
GCGGGCCCCAGCTACTGTCTGACGATGGTGCTGCCACTCGTGGGTCTGGC
GGTGCTGCAAGGGCGCTTCGAGGGCCACGCCCATGCGCTGCGCATCATTC
GATCAGACGGCCGCAACGGGAACGCCGAGCTGCCCCTGGCCGTTGGGAAA
CCGGGCGGTGTCCTGCGGCCGGCACGGCGGCCCGAGGTGATCTTCCTGGC
GGAGCGGGCCGACGATCAGCGGGCGTGGCAGCAGTGGCTCGAGCGCTGCA
CCATGGACAGCCACGCGGCGCCGACGCGGCCGGAGCGGCGCGGCGACGAC
GGCGGCGGCGGAGGAAGGTCCGCTGGCGGCGGCGGGTGGGGCGACGGCGG
GGAGGAAGGGTATCGGCATTTGTACGTGACGTGTGAGGGAGTCGAGGAGG
ACGAAGGAGTGGCGCTGTACCAGTGGCTTATGACGGCGCTCAGCGAGCGC
ATGTAGCGCCCAAAGCTCGGTGCGTTCTTTCCTCTGGCGGGGCAAGACGG
CGACGCAGAGGTGGCCGGCCGCTGTTTGGACCGCCGGCATTCCAGCAAGA
TGGACGGAACTAGATTGAAAACCCGGCGGCTGCAGGCTGGTGTTATTGAT
TTCATCACATTGGGGGAACGGGGCCTCTACAAAAGAGTCGGGCCCACCAA
GGGACAAGAGAGGCACGACACCTTCGCGAAGCATGATAGGCGGACAGCCA
CTGTAAAAACCATTGAATTTTGAATAAGTTATTAACTAACTGCGGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1940:790..1886+

>mRNA_P-wetherbeei_contig1940.1.1 ID=mRNA_P-wetherbeei_contig1940.1.1|Name=mRNA_P-wetherbeei_contig1940.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=765bp|location=Sequence derived from alignment at P-wetherbeei_contig1940:790..1886+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGAGCTGGTGATGCTGGAGCTAATTTCTGAGACGCTGGGGCCCGA
GTTCGCGCAGCTGCACCTGCTGCACCCGCCGGCGTATGCCGTCTGCATGC
ACGGCTGGCTCTGGAAGCTCCATGACGGCGGCGGCATGCTCATCAAGCGC
ACCAAGCACTACTATGCGCTGGCCGGCCACCTGCTGTACGAGTTTAGTCC
GATCGTGGACGGCGACGCCGGCCCCGGCGGCGGGAATAGCGGCGGGAGCA
GCGGTGGTAGCAGTAGCGGCGGTGGCGGTGGCGGTGGCGGCGGGTCCGGT
GCCGCGGCGGCGGGCCCCAGCTACTGTCTGACGATGGTGCTGCCACTCGT
GGGTCTGGCGGTGCTGCAAGGGCGCTTCGAGGGCCACGCCCATGCGCTGC
GCATCATTCGATCAGACGGCCGCAACGGGAACGCCGAGCTGCCCCTGGCC
GTTGGGAAACCGGGCGGTGTCCTGCGGCCGGCACGGCGGCCCGAGGTGAT
CTTCCTGGCGGAGCGGGCCGACGATCAGCGGGCGTGGCAGCAGTGGCTCG
AGCGCTGCACCATGGACAGCCACGCGGCGCCGACGCGGCCGGAGCGGCGC
GGCGACGACGGCGGCGGCGGAGGAAGGTCCGCTGGCGGCGGCGGGTGGGG
CGACGGCGGGGAGGAAGGGTATCGGCATTTGTACGTGACGTGTGAGGGAG
TCGAGGAGGACGAAGGAGTGGCGCTGTACCAGTGGCTTATGACGGCGCTC
AGCGAGCGCATGTAG
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