mRNA_P-wetherbeei_contig19396.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19396.1.1
Unique NamemRNA_P-wetherbeei_contig19396.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19396.1.1 vs. uniprot
Match: UPI001F295FA5 (histidine kinase n=1 Tax=Dyadobacter sp. CY261 TaxID=2907203 RepID=UPI001F295FA5)

HSP 1 Score: 420 bits (1080), Expect = 2.450e-139
Identity = 214/234 (91.45%), Postives = 225/234 (96.15%), Query Frame = 1
Query:    1 YENSQENDIAHGFYFGLIAALIIYNLFVFISIRERTYLYYVFYIFFVALNIGYIKGHFLQFIVPHFPQANHSNYTGSLAFIFALLFTNSFLNTSYYCPRLRKFGWLIVVLCVAIIVLSLSGHLLLGFQLNWLAVGFFLFYSNLIGFAVLRQGFKPAKYYLMAFTALLVGILVFMMKDMAILPENSFTEGAYQIGSGLEAIILSFALANKLNTYKREKEVTQAEALAQATLFSQR 702
            YENSQENDIAHGFYFGLIAALIIYNLFVFISIRER+YLYYVFYIF VA+NI YIKGHFLQF+VPHFPQANHSNY+GSLAFIFALLFTNSFLNTSYYCPRL+K GWLIVV CVAIIVLSLSG+LLLGFQLNWL VGFFL YSNLIGFAVLRQGFKPAKYYLMAFTALL GIL+FMMKDMA++PEN FTEG+YQIGSGLEAIILSFALANKLNTYKREKEVTQAEALAQA LFSQ+
Sbjct:  163 YENSQENDIAHGFYFGLIAALIIYNLFVFISIRERSYLYYVFYIFCVAMNISYIKGHFLQFMVPHFPQANHSNYSGSLAFIFALLFTNSFLNTSYYCPRLKKLGWLIVVSCVAIIVLSLSGYLLLGFQLNWLTVGFFLIYSNLIGFAVLRQGFKPAKYYLMAFTALLAGILIFMMKDMAVIPENWFTEGSYQIGSGLEAIILSFALANKLNTYKREKEVTQAEALAQAKLFSQQ 396          
BLAST of mRNA_P-wetherbeei_contig19396.1.1 vs. uniprot
Match: UPI0019BE709B (Uncharacterized protein n=2 Tax=Dyadobacter endophyticus TaxID=1749036 RepID=UPI0019BE709B)

HSP 1 Score: 415 bits (1066), Expect = 3.450e-137
Identity = 211/234 (90.17%), Postives = 221/234 (94.44%), Query Frame = 1
Query:    1 YENSQENDIAHGFYFGLIAALIIYNLFVFISIRERTYLYYVFYIFFVALNIGYIKGHFLQFIVPHFPQANHSNYTGSLAFIFALLFTNSFLNTSYYCPRLRKFGWLIVVLCVAIIVLSLSGHLLLGFQLNWLAVGFFLFYSNLIGFAVLRQGFKPAKYYLMAFTALLVGILVFMMKDMAILPENSFTEGAYQIGSGLEAIILSFALANKLNTYKREKEVTQAEALAQATLFSQR 702
            YENSQENDIAHGFYFGLIAALIIYNLFVFISIRERTYLYYVFYIF VALNI YIKGHFLQFIVPHFPQANHSNYTGSLAFIFALLFTNSFLNTSYYCP LRKFGWLI+V CV+II LSLSG+LLLGF+LNW+ VG FL YSN+IGF VL+QGFKPA+YYLM FTALL GI +FMMKDMAILPEN FTEGAYQIGSGLEAIILSFALANKLNTYKREKEVTQAEALAQATLFSQ+
Sbjct:  166 YENSQENDIAHGFYFGLIAALIIYNLFVFISIRERTYLYYVFYIFCVALNISYIKGHFLQFIVPHFPQANHSNYTGSLAFIFALLFTNSFLNTSYYCPGLRKFGWLIIVSCVSIIALSLSGYLLLGFKLNWITVGLFLIYSNVIGFVVLKQGFKPARYYLMGFTALLAGIFIFMMKDMAILPENWFTEGAYQIGSGLEAIILSFALANKLNTYKREKEVTQAEALAQATLFSQQ 399          
BLAST of mRNA_P-wetherbeei_contig19396.1.1 vs. uniprot
Match: A0A1G8C4P7_9BACT (Signal transduction histidine kinase n=2 Tax=Dyadobacter soli TaxID=659014 RepID=A0A1G8C4P7_9BACT)

HSP 1 Score: 409 bits (1052), Expect = 7.150e-135
Identity = 209/234 (89.32%), Postives = 219/234 (93.59%), Query Frame = 1
Query:    1 YENSQENDIAHGFYFGLIAALIIYNLFVFISIRERTYLYYVFYIFFVALNIGYIKGHFLQFIVPHFPQANHSNYTGSLAFIFALLFTNSFLNTSYYCPRLRKFGWLIVVLCVAIIVLSLSGHLLLGFQLNWLAVGFFLFYSNLIGFAVLRQGFKPAKYYLMAFTALLVGILVFMMKDMAILPENSFTEGAYQIGSGLEAIILSFALANKLNTYKREKEVTQAEALAQATLFSQR 702
            YENSQENDIAHGFYFGLIAALIIYNLFVFISIRERTYLYYVFYIFFVALNI YIKGHFLQFIVPHFPQANHSNYTGSLAFIFALLFTNSFLNT YYCPRL+K G LI+V CV+IIVLSLSGHLLLGF+LNW+ VG FL YSNL G+ VLRQGFKPA+YYLM FT LLVGI +FMMKDMA+LPEN FTEGAYQIGS LEAIILSFALANKLNTYKREKEVTQAEALAQATLFSQ+
Sbjct:  182 YENSQENDIAHGFYFGLIAALIIYNLFVFISIRERTYLYYVFYIFFVALNISYIKGHFLQFIVPHFPQANHSNYTGSLAFIFALLFTNSFLNTGYYCPRLKKLGLLIIVSCVSIIVLSLSGHLLLGFKLNWVTVGLFLIYSNLTGYVVLRQGFKPARYYLMGFTILLVGIFIFMMKDMAMLPENWFTEGAYQIGSALEAIILSFALANKLNTYKREKEVTQAEALAQATLFSQQ 415          
BLAST of mRNA_P-wetherbeei_contig19396.1.1 vs. uniprot
Match: A0A1H6TW33_9BACT (Signal transduction histidine kinase n=2 Tax=Dyadobacter sp. SG02 TaxID=1855291 RepID=A0A1H6TW33_9BACT)

HSP 1 Score: 404 bits (1039), Expect = 6.460e-133
Identity = 204/234 (87.18%), Postives = 217/234 (92.74%), Query Frame = 1
Query:    1 YENSQENDIAHGFYFGLIAALIIYNLFVFISIRERTYLYYVFYIFFVALNIGYIKGHFLQFIVPHFPQANHSNYTGSLAFIFALLFTNSFLNTSYYCPRLRKFGWLIVVLCVAIIVLSLSGHLLLGFQLNWLAVGFFLFYSNLIGFAVLRQGFKPAKYYLMAFTALLVGILVFMMKDMAILPENSFTEGAYQIGSGLEAIILSFALANKLNTYKREKEVTQAEALAQATLFSQR 702
            YENSQ+ND+AHGFYFGLIAALIIYNLFVFISIRER YLYYVFYIFFVALNI YIKGHFLQFI PHFPQANHSNYTGSLAFIFAL FTNSFLNTSYYCPRL+K GWLI+V CVAII LSLSG+LLLGFQLNW+ VG FL YSNL G+ VLRQGFKPA+YYLM FT LL+GI +FM+KDMAILPEN FTEGAYQIGS LEAIILSFALANKLNTYK+EKEVTQAEALAQATLFSQ+
Sbjct:  182 YENSQQNDVAHGFYFGLIAALIIYNLFVFISIRERAYLYYVFYIFFVALNISYIKGHFLQFIAPHFPQANHSNYTGSLAFIFALFFTNSFLNTSYYCPRLKKSGWLILVSCVAIIALSLSGYLLLGFQLNWVTVGLFLIYSNLTGYVVLRQGFKPARYYLMGFTILLLGIFIFMLKDMAILPENWFTEGAYQIGSALEAIILSFALANKLNTYKKEKEVTQAEALAQATLFSQQ 415          
BLAST of mRNA_P-wetherbeei_contig19396.1.1 vs. uniprot
Match: A0A2P8GEV3_9BACT (Signal transduction histidine kinase n=4 Tax=Dyadobacter TaxID=120831 RepID=A0A2P8GEV3_9BACT)

HSP 1 Score: 394 bits (1013), Expect = 5.240e-129
Identity = 200/234 (85.47%), Postives = 214/234 (91.45%), Query Frame = 1
Query:    1 YENSQENDIAHGFYFGLIAALIIYNLFVFISIRERTYLYYVFYIFFVALNIGYIKGHFLQFIVPHFPQANHSNYTGSLAFIFALLFTNSFLNTSYYCPRLRKFGWLIVVLCVAIIVLSLSGHLLLGFQLNWLAVGFFLFYSNLIGFAVLRQGFKPAKYYLMAFTALLVGILVFMMKDMAILPENSFTEGAYQIGSGLEAIILSFALANKLNTYKREKEVTQAEALAQATLFSQR 702
            YENSQ+ DI HGFY+GLIAALIIYNLFVFISIRERTYLYYVFYIFFVALNIGY KG FLQFIVP FPQANHSNYTGSLAFIFALLFTNSFLNT +YCPRLRK GWLIVV CV ++ LSL GHLL GFQL+WL VGFFL YSN++GF VL+QGFKPA+YYLM FTALL GI +FMMKDMAI PEN FTEGAYQIGSGLEAIILSFALANKLNT+KREKE+TQAEALAQATLFSQ+
Sbjct:  182 YENSQKTDIGHGFYYGLIAALIIYNLFVFISIRERTYLYYVFYIFFVALNIGYSKGLFLQFIVPDFPQANHSNYTGSLAFIFALLFTNSFLNTRHYCPRLRKLGWLIVVSCVGVVGLSLGGHLLEGFQLSWLTVGFFLIYSNVVGFTVLKQGFKPARYYLMGFTALLAGIFIFMMKDMAIFPENWFTEGAYQIGSGLEAIILSFALANKLNTFKREKELTQAEALAQATLFSQQ 415          
BLAST of mRNA_P-wetherbeei_contig19396.1.1 vs. uniprot
Match: UPI001F255C64 (histidine kinase n=1 Tax=Dyadobacter sp. CY323 TaxID=2907302 RepID=UPI001F255C64)

HSP 1 Score: 334 bits (856), Expect = 1.750e-105
Identity = 165/234 (70.51%), Postives = 198/234 (84.62%), Query Frame = 1
Query:    1 YENSQENDIAHGFYFGLIAALIIYNLFVFISIRERTYLYYVFYIFFVALNIGYIKGHFLQFIVPHFPQANHSNYTGSLAFIFALLFTNSFLNTSYYCPRLRKFGWLIVVLCVAIIVLSLSGHLLLGFQLNWLAVGFFLFYSNLIGFAVLRQGFKPAKYYLMAFTALLVGILVFMMKDMAILPENSFTEGAYQIGSGLEAIILSFALANKLNTYKREKEVTQAEALAQATLFSQR 702
            YE +Q  D+  GFYFGLIAALIIYNLFVFISIRERTYLYYV Y+ FVA NIGYIKG+FLQFIVP+FP ANHSN++G++AF FA+LFT+SFLNT YYCP+LR+ GWLI   C    ++SL+G LLLGF +NW+ V  FL YSN+IGF V+ +GF PAKYYLM F+ L+ GI++FM KD+A++ EN FT+GAYQIGSGLEAIILSFALANKLNT+K+EKE+TQA ALAQAT FSQ+
Sbjct:  182 YEQNQVADVVSGFYFGLIAALIIYNLFVFISIRERTYLYYVVYVLFVAFNIGYIKGYFLQFIVPNFPAANHSNFSGAIAFTFAILFTDSFLNTRYYCPKLRRLGWLIYASCAFTFIVSLAGELLLGFYVNWITVFSFLVYSNVIGFTVMAKGFVPAKYYLMGFSILVAGIIIFMFKDIALIEENWFTDGAYQIGSGLEAIILSFALANKLNTFKKEKELTQAHALAQATQFSQQ 415          
BLAST of mRNA_P-wetherbeei_contig19396.1.1 vs. uniprot
Match: UPI001FD6068D (histidine kinase n=1 Tax=Dyadobacter sp. U1 TaxID=2910158 RepID=UPI001FD6068D)

HSP 1 Score: 266 bits (680), Expect = 3.040e-79
Identity = 138/199 (69.35%), Postives = 165/199 (82.91%), Query Frame = 3
Query:  690 FFAALIGSQESERKRVAAELHDSLGQSLGMVKNKVLMIKRDTGKPELHEKQIKDLEEMVTDAIQEVRNISYNLRPLHLELLGITQSLHSLLEDVVETGLIEVETDIQDFDNLLTKANEMNVFRIVQECFNNILKHAQATSARIQISKEDAMIAISIKDNGVGIQPAATGKAGFGMIGIRERLNILDGRIEILENNPSGT 1286
            F   LI SQE+ERKRVAAELHDSLGQSLGMVKNKVLM+KRD  KP   EK + DLE+MV + IQEVRNISYNLRPLHL+LLGITQS++SLLEDV+E+G + + TDI+ FDNLL+K+NE+NVFRI+QECFNNI+KHAQAT ARI I +E   + I+I DNG+G+Q A  GK GFG++GIRERLNIL+G +EI  N P GT
Sbjct:  424 FSHQLIESQENERKRVAAELHDSLGQSLGMVKNKVLMLKRDMEKPLAKEKHVTDLEKMVGENIQEVRNISYNLRPLHLDLLGITQSVNSLLEDVMESGTLYIVTDIELFDNLLSKSNEINVFRIIQECFNNIVKHAQATEARISIRREQNELKITIADNGIGMQQAGRGKNGFGLLGIRERLNILNGYMEITCNQPHGT 622          
BLAST of mRNA_P-wetherbeei_contig19396.1.1 vs. uniprot
Match: UPI001F2AD977 (histidine kinase n=1 Tax=Dyadobacter sp. LJ419 TaxID=2906456 RepID=UPI001F2AD977)

HSP 1 Score: 261 bits (667), Expect = 1.900e-77
Identity = 128/233 (54.94%), Postives = 173/233 (74.25%), Query Frame = 1
Query:    4 ENSQENDIAHGFYFGLIAALIIYNLFVFISIRERTYLYYVFYIFFVALNIGYIKGHFLQFIVPHFPQANHSNYTGSLAFIFALLFTNSFLNTSYYCPRLRKFGWLIVVLCVAIIVLSLSGHLLLGFQLNWLAVGFFLFYSNLIGFAVLRQGFKPAKYYLMAFTALLVGILVFMMKDMAILPENSFTEGAYQIGSGLEAIILSFALANKLNTYKREKEVTQAEALAQATLFSQR 702
            EN+Q  ++  G YFGLI ALIIYNLFVFISIRE  YLYY  YI  +A NI YI+G+ L +I P FPQANHS ++   AF+FA+LFTNSFLNT +YCP LR+ G+ ++  CV  +  +++G +L+ FQLNW+   FF++Y N +GF+VLR+GF PA+YYL+ F      + +F++KD A+LP+N  TE AYQIGS LE++ILS+ALANKL+ +KRE++ +Q  AL QA  FSQ+
Sbjct:  183 ENTQTIELIDGIYFGLILALIIYNLFVFISIRESAYLYYAMYILCIAFNIAYIRGYLLHYIFPAFPQANHSVFSAVGAFLFAVLFTNSFLNTRHYCPELRRLGYFLLGCCVVSLAFAVNGDVLMAFQLNWIIFVFFIYYFNRLGFSVLRKGFSPARYYLLGFNIFFAALALFILKDNALLPQNMLTESAYQIGSALESVILSYALANKLHIFKRERQESQDLALLQANQFSQQ 415          
BLAST of mRNA_P-wetherbeei_contig19396.1.1 vs. uniprot
Match: A0A7L7L4N8_9BACT (Histidine kinase domain-containing protein n=1 Tax=Adhaeribacter radiodurans TaxID=2745197 RepID=A0A7L7L4N8_9BACT)

HSP 1 Score: 194 bits (494), Expect = 3.330e-52
Identity = 98/204 (48.04%), Postives = 142/204 (69.61%), Query Frame = 3
Query:  687 AFFAALIGSQESERKRVAAELHDSLGQSLGMVKNKVLMIKRDTGKPELHEKQIKDLEEMVTDAIQEVRNISYNLRPLHLELLGITQSLHSLLEDVVETGLIEVETDIQDFDNLLTKANEMNVFRIVQECFNNILKHAQATSARIQISKEDAMIAISIKDNGVGIQPA----ATGKAGFGMIGIRERLNILDGRIEILENNPSGT 1286
            AF   LI SQE+ERKR+AAELHDS+GQSL ++KN++L++K+    PE   +   DL E V   I E+R ISY LRP  L++LG+TQS++ L+++V E   I++  +    DNL  K  E+NV+RI+QEC NNI+KH+ ATSAR+ I +ED ++ +S++DNG GI P     +  K+GFG+ G++ERL+IL G+++I    P GT
Sbjct:  410 AFSQELIQSQENERKRIAAELHDSVGQSLILIKNRILLLKKRLDDPEKVARHADDLTETVAHTISEIRGISYGLRPFQLDMLGLTQSINGLVDEVSEGSGIDIRVNADSIDNLFPKEQEINVYRIIQECLNNIVKHSAATSARVNIVREDGLVHLSVEDNGKGINPTNATNSVPKSGFGLRGMQERLSILAGKLQIKSAVPQGT 613          
BLAST of mRNA_P-wetherbeei_contig19396.1.1 vs. uniprot
Match: A0A2T2YA22_9BACT (Histidine kinase domain-containing protein n=1 Tax=Adhaeribacter arboris TaxID=2072846 RepID=A0A2T2YA22_9BACT)

HSP 1 Score: 192 bits (489), Expect = 1.680e-51
Identity = 99/203 (48.77%), Postives = 140/203 (68.97%), Query Frame = 3
Query:  687 AFFAALIGSQESERKRVAAELHDSLGQSLGMVKNKVLMIKRDTGKPELHEKQIKDLEEMVTDAIQEVRNISYNLRPLHLELLGITQSLHSLLEDVVETGLIEVETDIQDFDNLLTKANEMNVFRIVQECFNNILKHAQATSARIQISKEDAMIAISIKDNGVGIQPAATG---KAGFGMIGIRERLNILDGRIEILENNPSGT 1286
            AF   LI SQE+ERKR+AAELHDS+GQSL ++KN++L++K+    PE   +   DL E V+  I E+R ISY LRP  L++LG+TQS++ L ++V E   I++       DNL  K  E+NV+RIVQEC NNI+KH+ ATSA + I +E+  I +S++DNG G+ PA T    K+GFG+ G++ERL+IL G+++I    P GT
Sbjct:  410 AFSQELIQSQENERKRIAAELHDSVGQSLILMKNRILLLKKRLDDPERLARHADDLTETVSHTISEIRTISYGLRPFQLDMLGLTQSINGLADEVAEGSGIDIRVKADSIDNLFPKEQEINVYRIVQECLNNIVKHSGATSAHVNIIRENGQIQLSVEDNGKGMNPANTQSAPKSGFGLRGMQERLSILTGKLQIKSAEPQGT 612          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19396.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001F295FA52.450e-13991.45histidine kinase n=1 Tax=Dyadobacter sp. CY261 Tax... [more]
UPI0019BE709B3.450e-13790.17Uncharacterized protein n=2 Tax=Dyadobacter endoph... [more]
A0A1G8C4P7_9BACT7.150e-13589.32Signal transduction histidine kinase n=2 Tax=Dyado... [more]
A0A1H6TW33_9BACT6.460e-13387.18Signal transduction histidine kinase n=2 Tax=Dyado... [more]
A0A2P8GEV3_9BACT5.240e-12985.47Signal transduction histidine kinase n=4 Tax=Dyado... [more]
UPI001F255C641.750e-10570.51histidine kinase n=1 Tax=Dyadobacter sp. CY323 Tax... [more]
UPI001FD6068D3.040e-7969.35histidine kinase n=1 Tax=Dyadobacter sp. U1 TaxID=... [more]
UPI001F2AD9771.900e-7754.94histidine kinase n=1 Tax=Dyadobacter sp. LJ419 Tax... [more]
A0A7L7L4N8_9BACT3.330e-5248.04Histidine kinase domain-containing protein n=1 Tax... [more]
A0A2T2YA22_9BACT1.680e-5148.77Histidine kinase domain-containing protein n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19396contigP-wetherbeei_contig19396:1..1286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog391596.PBAL39_24750
Preferred namepgtB
PFAMs7TMR-DISMED2,7TMR-DISM_7TM,HATPase_c,HisKA
Model size1286
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.98e-37
EggNOG OGsCOG4191@1|root,COG4191@2|Bacteria,4NEJX@976|Bacteroidetes,1IQHK@117747|Sphingobacteriia
DescriptionHistidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Cds size705
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186170.9893384-CDS-P-wetherbeei_contig19396:0..7051683186170.9893384-CDS-P-wetherbeei_contig19396:0..705Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19396 1..705 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186171.0029829-UTR-P-wetherbeei_contig19396:705..12861683186171.0029829-UTR-P-wetherbeei_contig19396:705..1286Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19396 706..1286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19396.1.1prot_P-wetherbeei_contig19396.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19396 1..705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19396.1.1

>prot_P-wetherbeei_contig19396.1.1 ID=prot_P-wetherbeei_contig19396.1.1|Name=mRNA_P-wetherbeei_contig19396.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=235bp
YENSQENDIAHGFYFGLIAALIIYNLFVFISIRERTYLYYVFYIFFVALN
IGYIKGHFLQFIVPHFPQANHSNYTGSLAFIFALLFTNSFLNTSYYCPRL
RKFGWLIVVLCVAIIVLSLSGHLLLGFQLNWLAVGFFLFYSNLIGFAVLR
QGFKPAKYYLMAFTALLVGILVFMMKDMAILPENSFTEGAYQIGSGLEAI
ILSFALANKLNTYKREKEVTQAEALAQATLFSQR*
back to top

mRNA from alignment at P-wetherbeei_contig19396:1..1286+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19396.1.1 ID=mRNA_P-wetherbeei_contig19396.1.1|Name=mRNA_P-wetherbeei_contig19396.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1286bp|location=Sequence derived from alignment at P-wetherbeei_contig19396:1..1286+ (Phaeothamnion wetherbeei SAG_119_79)
TATGAAAACAGCCAGGAGAATGACATTGCGCACGGGTTTTATTTCGGATT GATTGCCGCGCTGATCATTTACAATCTGTTTGTATTTATTTCGATACGGG AGCGCACTTATCTGTACTACGTGTTTTATATCTTCTTCGTAGCATTGAAC ATAGGTTATATCAAAGGCCACTTTCTGCAGTTCATCGTTCCCCATTTTCC TCAGGCCAATCATTCCAATTATACCGGCAGCCTCGCTTTTATATTCGCGT TGCTTTTCACCAATTCCTTCCTGAACACAAGCTACTATTGCCCCCGGCTG AGAAAATTTGGCTGGCTGATAGTCGTGCTCTGCGTTGCAATCATTGTCCT TTCATTGTCGGGCCATTTATTGCTGGGTTTTCAACTTAACTGGCTCGCCG TAGGCTTCTTCCTTTTCTACTCGAATCTAATCGGTTTTGCGGTGTTGAGG CAGGGATTCAAGCCGGCAAAATATTACCTGATGGCCTTCACTGCATTACT GGTAGGCATTCTTGTTTTTATGATGAAAGACATGGCCATCCTTCCGGAGA ACTCGTTCACAGAGGGCGCCTATCAGATCGGGTCGGGCCTGGAAGCCATC ATCCTTTCCTTCGCGCTGGCCAACAAGCTCAACACTTATAAAAGAGAGAA GGAAGTGACCCAGGCGGAGGCTCTGGCGCAGGCGACGCTTTTTTCGCAGC GCTGATCGGTTCACAGGAAAGTGAGCGCAAACGGGTGGCTGCGGAACTGC ACGATAGCCTGGGACAAAGCCTGGGAATGGTCAAAAACAAAGTACTGATG ATCAAAAGAGATACCGGCAAACCTGAGCTGCACGAAAAACAGATTAAAGA CCTGGAAGAGATGGTCACAGATGCTATCCAGGAGGTTCGTAATATCTCCT ATAACCTGCGCCCGCTGCATCTGGAACTGCTTGGTATTACGCAATCCCTC CATAGCTTATTGGAAGATGTCGTGGAAACAGGACTGATCGAGGTGGAAAC GGATATTCAGGACTTTGATAACCTGCTCACGAAAGCCAATGAAATGAATG TTTTCAGGATCGTCCAGGAGTGTTTCAACAACATTCTCAAACACGCGCAG GCCACGTCGGCGCGAATTCAGATAAGCAAAGAAGACGCAATGATAGCTAT TAGCATAAAAGACAACGGTGTGGGTATCCAACCTGCGGCAACGGGAAAGG CAGGCTTCGGGATGATCGGGATCCGGGAGCGGCTCAATATCCTCGACGGC CGTATCGAGATCCTGGAAAACAACCCGTCCGGTACT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig19396:1..1286+

>mRNA_P-wetherbeei_contig19396.1.1 ID=mRNA_P-wetherbeei_contig19396.1.1|Name=mRNA_P-wetherbeei_contig19396.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=705bp|location=Sequence derived from alignment at P-wetherbeei_contig19396:1..1286+ (Phaeothamnion wetherbeei SAG_119_79)
TATGAAAACAGCCAGGAGAATGACATTGCGCACGGGTTTTATTTCGGATT
GATTGCCGCGCTGATCATTTACAATCTGTTTGTATTTATTTCGATACGGG
AGCGCACTTATCTGTACTACGTGTTTTATATCTTCTTCGTAGCATTGAAC
ATAGGTTATATCAAAGGCCACTTTCTGCAGTTCATCGTTCCCCATTTTCC
TCAGGCCAATCATTCCAATTATACCGGCAGCCTCGCTTTTATATTCGCGT
TGCTTTTCACCAATTCCTTCCTGAACACAAGCTACTATTGCCCCCGGCTG
AGAAAATTTGGCTGGCTGATAGTCGTGCTCTGCGTTGCAATCATTGTCCT
TTCATTGTCGGGCCATTTATTGCTGGGTTTTCAACTTAACTGGCTCGCCG
TAGGCTTCTTCCTTTTCTACTCGAATCTAATCGGTTTTGCGGTGTTGAGG
CAGGGATTCAAGCCGGCAAAATATTACCTGATGGCCTTCACTGCATTACT
GGTAGGCATTCTTGTTTTTATGATGAAAGACATGGCCATCCTTCCGGAGA
ACTCGTTCACAGAGGGCGCCTATCAGATCGGGTCGGGCCTGGAAGCCATC
ATCCTTTCCTTCGCGCTGGCCAACAAGCTCAACACTTATAAAAGAGAGAA
GGAAGTGACCCAGGCGGAGGCTCTGGCGCAGGCGACGCTTTTTTCGCAGC
GCTGA
back to top