mRNA_P-wetherbeei_contig19370.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19370.1.1
Unique NamemRNA_P-wetherbeei_contig19370.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19370.1.1 vs. uniprot
Match: K3X3Y7_GLOUD (MUTSd domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X3Y7_GLOUD)

HSP 1 Score: 63.5 bits (153), Expect = 4.430e-12
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 RSKEGFSIFGVYDRTISKPGRRCLKQWMLKPSLDLAVINSRQDGVELFSRAENAE 165
            R+KEGFS+FG+ +RT++K G   L+QWML P ++ A+IN R D V  F +A N E
Sbjct:   12 RAKEGFSLFGLINRTVTKSGNYKLRQWMLTPLINPALINERLDAVAFFFQASNEE 66
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BLAST of mRNA_P-wetherbeei_contig19370.1.1 vs. uniprot
Match: UPI00044492AE (hypothetical protein n=1 Tax=Stereum hirsutum (strain FP-91666) TaxID=721885 RepID=UPI00044492AE)

HSP 1 Score: 65.1 bits (157), Expect = 6.380e-11
Identity = 25/53 (47.17%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 RSKEGFSIFGVYDRTISKPGRRCLKQWMLKPSLDLAVINSRQDGVELFSRAEN 159
            ++KEG S+F + D+T +  GRR L+ W+L+PSLD+++I+SR D ++ F+R EN
Sbjct:  243 KTKEGLSLFAILDQTRTALGRRLLRTWLLRPSLDISIISSRHDAIDCFTRPEN 295
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BLAST of mRNA_P-wetherbeei_contig19370.1.1 vs. uniprot
Match: A0A7S3Q5I7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q5I7_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 8.750e-11
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 RSKEGFSIFGVYDRTISKPGRRCLKQWMLKPSLDLAVINSRQDGVELF 144
            + KEGFS+F + DRT SK GR CLK+WML+P L +  I  RQDG++LF
Sbjct:  578 KDKEGFSLFTLLDRTKSKVGRACLKEWMLQPLLHIPSIIERQDGIDLF 625
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BLAST of mRNA_P-wetherbeei_contig19370.1.1 vs. uniprot
Match: UPI0004623A64 (MutS family protein MSH5 n=1 Tax=Trametes versicolor (strain FP-101664) TaxID=717944 RepID=UPI0004623A64)

HSP 1 Score: 64.3 bits (155), Expect = 1.190e-10
Identity = 25/53 (47.17%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 RSKEGFSIFGVYDRTISKPGRRCLKQWMLKPSLDLAVINSRQDGVELFSRAEN 159
            ++KEG S+FG+ + T +  GR  +++W L+PS+ LA+IN+R D VE F+RA+N
Sbjct:  295 KTKEGLSLFGILNNTKTTLGRALMREWFLRPSMSLAIINARHDAVECFTRADN 347
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BLAST of mRNA_P-wetherbeei_contig19370.1.1 vs. uniprot
Match: D7FKD9_ECTSI (MutS protein homolog 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD9_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 2.220e-10
Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 RSKEGFSIFGVYDRTISKPGRRCLKQWMLKPSLDLAVINSRQDGVELFSRAENAE 165
            R K    +F V  RT S  GRRCLK+WMLKP  D+A I+ RQDGVE+  +AENAE
Sbjct:   89 RRKSSILMFSVA-RTKSASGRRCLKEWMLKPLHDIAAISVRQDGVEVLMQAENAE 142
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BLAST of mRNA_P-wetherbeei_contig19370.1.1 vs. uniprot
Match: A0A167PIB9_PHYB8 (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167PIB9_PHYB8)

HSP 1 Score: 63.5 bits (153), Expect = 2.230e-10
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 RSKEGFSIFGVYDRTISKPGRRCLKQWMLKPSLDLAVINSRQDGVELFSRAENAE 165
            R KEGFS+FGV D+T++  G   L+QW+ +PSLD+++IN+R   VE FS    AE
Sbjct:  192 RGKEGFSLFGVLDQTVTPLGHHLLRQWLQRPSLDISLINTRHLSVEYFSGHGRAE 246
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BLAST of mRNA_P-wetherbeei_contig19370.1.1 vs. uniprot
Match: A0A8K1C711_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C711_PYTOL)

HSP 1 Score: 63.5 bits (153), Expect = 2.230e-10
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 RSKEGFSIFGVYDRTISKPGRRCLKQWMLKPSLDLAVINSRQDGVELFSRAE 156
            RSKEGFS++G+ +RT++K G   L+QWML P LD+A+IN R D VE   + +
Sbjct:  236 RSKEGFSLYGLLNRTLTKGGAALLRQWMLAPLLDVAIINMRLDAVEYLCKPD 287
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BLAST of mRNA_P-wetherbeei_contig19370.1.1 vs. uniprot
Match: A0A392PL58_9FABA (DNA mismatch repair protein MSH5-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392PL58_9FABA)

HSP 1 Score: 59.7 bits (143), Expect = 2.710e-10
Identity = 24/52 (46.15%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 RSKEGFSIFGVYDRTISKPGRRCLKQWMLKPSLDLAVINSRQDGVELFSRAE 156
            R+KEGFS+FG+ ++ ++  GRR L+QW L+P LDL V+N R + +  F  +E
Sbjct:   23 RAKEGFSVFGMMNKCVTPMGRRLLRQWFLRPILDLEVLNYRLNSISFFQCSE 74
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BLAST of mRNA_P-wetherbeei_contig19370.1.1 vs. uniprot
Match: A0A1M2W1Z0_TRAPU (MutS protein-like protein n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2W1Z0_TRAPU)

HSP 1 Score: 63.2 bits (152), Expect = 3.040e-10
Identity = 25/53 (47.17%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 RSKEGFSIFGVYDRTISKPGRRCLKQWMLKPSLDLAVINSRQDGVELFSRAEN 159
            ++KEG S+FG+ + T +  GR  +++W L+PS+ L VIN+R D VE F+RA+N
Sbjct:  295 KTKEGLSLFGILNNTKTTLGRALMREWFLRPSMSLVVINARHDAVECFTRADN 347
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BLAST of mRNA_P-wetherbeei_contig19370.1.1 vs. uniprot
Match: A0A5J5EXV5_9PEZI (Muts domain V-domain-containing protein n=1 Tax=Sphaerosporella brunnea TaxID=1250544 RepID=A0A5J5EXV5_9PEZI)

HSP 1 Score: 62.4 bits (150), Expect = 5.700e-10
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    1 RSKEGFSIFGVYDRTISKPGRRCLKQWMLKPSLDLAVINSRQDGVELFSRAEN 159
            R KEG S+FG+ + T S  G R LKQW L+PSL + VIN RQ+ V +  RA+N
Sbjct:  265 RGKEGLSLFGIINMTRSPLGHRLLKQWFLRPSLSINVINERQESVAVLLRADN 317
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19370.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K3X3Y7_GLOUD4.430e-1250.91MUTSd domain-containing protein n=1 Tax=Globispora... [more]
UPI00044492AE6.380e-1147.17hypothetical protein n=1 Tax=Stereum hirsutum (str... [more]
A0A7S3Q5I7_9STRA8.750e-1158.33Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
UPI0004623A641.190e-1047.17MutS family protein MSH5 n=1 Tax=Trametes versicol... [more]
D7FKD9_ECTSI2.220e-1058.18MutS protein homolog 5 n=1 Tax=Ectocarpus siliculo... [more]
A0A167PIB9_PHYB82.230e-1050.91DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A8K1C711_PYTOL2.230e-1051.92Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A392PL58_9FABA2.710e-1046.15DNA mismatch repair protein MSH5-like (Fragment) n... [more]
A0A1M2W1Z0_TRAPU3.040e-1047.17MutS protein-like protein n=1 Tax=Trametes pubesce... [more]
A0A5J5EXV5_9PEZI5.700e-1052.83Muts domain V-domain-containing protein n=1 Tax=Sp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19370contigP-wetherbeei_contig19370:245..902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog40492.XP_007304684.1
PFAMsMutS_III,MutS_IV,MutS_V
Model size165
Max annot lvl4751|Fungi
KEGG koko:K08741
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000793,GO:0000794,GO:0000795,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007129,GO:0007131,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0030983,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0035825,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0046483,GO:0048285,GO:0050896,GO:0051026,GO:0051276,GO:0051321,GO:0051716,GO:0061982,GO:0070013,GO:0070192,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0099086,GO:0140013,GO:1901360,GO:1901363,GO:1903046
Exons2
Evalue1.05e-11
EggNOG OGsCOG0249@1|root,KOG0221@2759|Eukaryota,38FDG@33154|Opisthokonta,3NVR7@4751|Fungi,3UYRP@5204|Basidiomycota,226T9@155619|Agaricomycetes,3H1G7@355688|Agaricomycetes incertae sedis
DescriptionATPase domain of DNA mismatch repair MUTS family
Cds size165
COG categoryL
BRITEko00000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186170.460331-CDS-P-wetherbeei_contig19370:244..3251683186170.460331-CDS-P-wetherbeei_contig19370:244..325Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19370 245..325 -
1683186170.4712174-CDS-P-wetherbeei_contig19370:818..9021683186170.4712174-CDS-P-wetherbeei_contig19370:818..902Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19370 819..902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19370.1.1prot_P-wetherbeei_contig19370.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19370 245..902 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19370.1.1

>prot_P-wetherbeei_contig19370.1.1 ID=prot_P-wetherbeei_contig19370.1.1|Name=mRNA_P-wetherbeei_contig19370.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=55bp
RSKEGFSIFGVYDRTISKPGRRCLKQWMLKPSLDLAVINSRQDGVELFSR
AENAE
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mRNA from alignment at P-wetherbeei_contig19370:245..902-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19370.1.1 ID=mRNA_P-wetherbeei_contig19370.1.1|Name=mRNA_P-wetherbeei_contig19370.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=658bp|location=Sequence derived from alignment at P-wetherbeei_contig19370:245..902- (Phaeothamnion wetherbeei SAG_119_79)
CGCAGCAAGGAGGGCTTCTCCATCTTCGGAGTGTACGACCGCACCATCTC
CAAACCGGGCCGGCGGTGCCTGAAGCAGTGGATGGTGAGGAAGAAGCTGA
CTACCTGGTGGAAGCTGAGATCACTCGTCTTCGTTTTGTTGCTCGCCGGC
ATCGTTTCCCCCTGCGGTTCTCTCCGAATTACTGCTCAGCAGAGAATGCT
TCCGTGTCTCAAATTCACCGCGCTCTTTTGCTTTTATGCCCTTTTATGTC
CGCTGCCCATCACATGGCATCAACCACCTCTGACCCGCCGCGTACTACCT
CCATCCACCGCTCACTTTTCCATTCATATTTTTTGGTTCACAACGACTGC
GCTTACACGTCGTCGTTGGCGCCGCTCACTGCGGTCCGCGGCCACCGCCC
CTGCTGCTACCGCCATCCTCCTCCGCGGCCGCCGTCACCACCCACCTCGG
TCCGCGTCCATTCGCGCTCCCCCTACCTCCATCCTCCGTCCCCGCTGCTT
CTGCTGCCATCAACACCGCCTTTGCACGCCGGCGCCACCCGCCACCGCCG
GCGGCGGCACGCTTCACTCTTTGCCAGCTGAAGCCGTCGCTGGACCTTGC
GGTCATCAACTCGCGGCAGGACGGCGTGGAGCTCTTTTCGCGCGCCGAGA
ACGCCGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19370:245..902-

>mRNA_P-wetherbeei_contig19370.1.1 ID=mRNA_P-wetherbeei_contig19370.1.1|Name=mRNA_P-wetherbeei_contig19370.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig19370:245..902- (Phaeothamnion wetherbeei SAG_119_79)
CGCAGCAAGGAGGGCTTCTCCATCTTCGGAGTGTACGACCGCACCATCTC
CAAACCGGGCCGGCGGTGCCTGAAGCAGTGGATGCTGAAGCCGTCGCTGG
ACCTTGCGGTCATCAACTCGCGGCAGGACGGCGTGGAGCTCTTTTCGCGC
GCCGAGAACGCCGAG
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