mRNA_P-wetherbeei_contig19363.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19363.1.1
Unique NamemRNA_P-wetherbeei_contig19363.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19363.1.1 vs. uniprot
Match: A0A521M8W7_9HYPH (Cytochrome ubiquinol oxidase subunit I n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A521M8W7_9HYPH)

HSP 1 Score: 172 bits (437), Expect = 9.060e-50
Identity = 87/97 (89.69%), Postives = 91/97 (93.81%), Query Frame = 1 
Query:   19 MGPAGFVAVIAGWVTTEVGRQPYTVHGLLRTADSASRLDAPAVAASLLAFIVVYFIVFGAGVFYILKLMSQPPHRGEEGPSRGAPVRAAGITPSPSV 309
            MGPAGFVAVIAGWVTTEVGRQPYTV+GLLRT DSASRLDAPAVAASLLAFIVVYF+VFGAGVFYILKLM QPPHRGE+GP RG PVRAAG+TP P V
Sbjct:  371 MGPAGFVAVIAGWVTTEVGRQPYTVYGLLRTVDSASRLDAPAVAASLLAFIVVYFVVFGAGVFYILKLMGQPPHRGEQGPDRGQPVRAAGLTPGPVV 467
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BLAST of mRNA_P-wetherbeei_contig19363.1.1 vs. uniprot
Match: A0A1H8LK66_9PROT (Cytochrome d ubiquinol oxidase subunit I n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1H8LK66_9PROT)

HSP 1 Score: 163 bits (413), Expect = 2.530e-46
Identity = 85/98 (86.73%), Postives = 88/98 (89.80%), Query Frame = 1 
Query:   16 AMGPAGFVAVIAGWVTTEVGRQPYTVHGLLRTADSASRLDAPAVAASLLAFIVVYFIVFGAGVFYILKLMSQPPHRGEEGPSRGAPVRAAGITPSPSV 309
            AMGPAGFVAVIAGWVTTEVGRQPYTVHGLLRTADS S L APAVA SLLAFIVVYFIVFGAGV YIL+LMSQ P RGE+GP RG PVRAAGITP+P V
Sbjct:  365 AMGPAGFVAVIAGWVTTEVGRQPYTVHGLLRTADSVSPLQAPAVAVSLLAFIVVYFIVFGAGVLYILRLMSQSPRRGEQGPERGHPVRAAGITPAPQV 462
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BLAST of mRNA_P-wetherbeei_contig19363.1.1 vs. uniprot
Match: A0A259MTP4_9PROT (Cytochrome ubiquinol oxidase subunit I n=6 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A259MTP4_9PROT)

HSP 1 Score: 161 bits (408), Expect = 1.640e-45
Identity = 82/98 (83.67%), Postives = 87/98 (88.78%), Query Frame = 1 
Query:   16 AMGPAGFVAVIAGWVTTEVGRQPYTVHGLLRTADSASRLDAPAVAASLLAFIVVYFIVFGAGVFYILKLMSQPPHRGEEGPSRGAPVRAAGITPSPSV 309
            AMGPAGFVAVIAGWVTTEVGRQPYTV+GLLRT DSAS LDAPAV ASLLAF+VVYF  FGAG +YILKLMS PPH GEEGP R  PVRAAGITP+P+V
Sbjct:  370 AMGPAGFVAVIAGWVTTEVGRQPYTVYGLLRTVDSASALDAPAVGASLLAFVVVYFFAFGAGTYYILKLMSHPPHLGEEGPRRDQPVRAAGITPAPAV 467
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BLAST of mRNA_P-wetherbeei_contig19363.1.1 vs. uniprot
Match: A0A1E4HL79_9PROT (Cytochrome D ubiquinol oxidase subunit I n=4 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1E4HL79_9PROT)

HSP 1 Score: 161 bits (407), Expect = 2.110e-45
Identity = 84/98 (85.71%), Postives = 89/98 (90.82%), Query Frame = 1 
Query:   16 AMGPAGFVAVIAGWVTTEVGRQPYTVHGLLRTADSASRLDAPAVAASLLAFIVVYFIVFGAGVFYILKLMSQPPHRGEEGPSRGAPVRAAGITPSPSV 309
            AMGPAGFVAVIAGWVTTEVGRQP+TV+GLLRT DSAS L APAV ASLLAFIVVYFIVFGAGV+YILKLMS  PHRGEEGP RG PVRAAGITP+ +V
Sbjct:  365 AMGPAGFVAVIAGWVTTEVGRQPFTVYGLLRTVDSASPLAAPAVGASLLAFIVVYFIVFGAGVYYILKLMSHSPHRGEEGPERGQPVRAAGITPASAV 462
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BLAST of mRNA_P-wetherbeei_contig19363.1.1 vs. uniprot
Match: A0A7C9VRW4_9BRAD (Cytochrome ubiquinol oxidase subunit I (Fragment) n=1 Tax=Candidatus Afipia apatlaquensis TaxID=2712852 RepID=A0A7C9VRW4_9BRAD)

HSP 1 Score: 151 bits (382), Expect = 3.160e-43
Identity = 76/95 (80.00%), Postives = 83/95 (87.37%), Query Frame = 1 
Query:   16 AMGPAGFVAVIAGWVTTEVGRQPYTVHGLLRTADSASRLDAPAVAASLLAFIVVYFIVFGAGVFYILKLMSQPPHRGEEGPSRGAPVRAAGITPS 300
            AMGPAGF+AV+AGWVTTE GRQP+TV+GLLRT DSAS LDAPAVA SLLAFIV YFIVFG GVFYIL+LM +PPH GEEGP   AP RAAGITP+
Sbjct:  202 AMGPAGFIAVLAGWVTTEAGRQPFTVYGLLRTVDSASPLDAPAVATSLLAFIVAYFIVFGMGVFYILRLMHEPPHHGEEGPRADAPARAAGITPA 296
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BLAST of mRNA_P-wetherbeei_contig19363.1.1 vs. uniprot
Match: A0A7V7PP62_9HYPH (Cytochrome ubiquinol oxidase subunit I n=1 Tax=Aureimonas leprariae TaxID=2615207 RepID=A0A7V7PP62_9HYPH)

HSP 1 Score: 153 bits (387), Expect = 1.830e-42
Identity = 75/103 (72.82%), Postives = 88/103 (85.44%), Query Frame = 1 
Query:    1 HGAGPAMGPAGFVAVIAGWVTTEVGRQPYTVHGLLRTADSASRLDAPAVAASLLAFIVVYFIVFGAGVFYILKLMSQPPHRGEEGPSRGAPVRAAGITPSPSV 309
            H A  AMGPAGFVAV+AGWVTTEVGRQP+TV+GLLRTA+SAS L APAVAASL+AF+++YF VFGAG  YILKLMS  PHRGE GP  G P+R AG+TP+P++
Sbjct:  362 HRAAVAMGPAGFVAVLAGWVTTEVGRQPFTVYGLLRTAESASPLQAPAVAASLVAFVLIYFAVFGAGTLYILKLMSHAPHRGESGPETGMPIRTAGVTPAPAI 464
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BLAST of mRNA_P-wetherbeei_contig19363.1.1 vs. uniprot
Match: UPI001F5E1E4E (cytochrome ubiquinol oxidase subunit I n=1 Tax=Phenylobacterium aquaticum TaxID=1763816 RepID=UPI001F5E1E4E)

HSP 1 Score: 149 bits (375), Expect = 8.060e-42
Identity = 77/98 (78.57%), Postives = 86/98 (87.76%), Query Frame = 1 
Query:   16 AMGPAGFVAVIAGWVTTEVGRQPYTVHGLLRTADSASRLDAPAVAASLLAFIVVYFIVFGAGVFYILKLMSQPPHRGEEGPSRGAPVRAAGITPSPSV 309
            AMGP GFVAV+AGWVTTEVGRQPYTV+GLLRT+ SAS LDAPAVAASL AF VVYF VFGAG+FY+L+LMSQPP   E GPS  APVRAAGITP+P++
Sbjct:  232 AMGPMGFVAVLAGWVTTEVGRQPYTVYGLLRTSHSASPLDAPAVAASLAAFAVVYFTVFGAGLFYLLRLMSQPPKAHEAGPSGPAPVRAAGITPAPAI 329
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BLAST of mRNA_P-wetherbeei_contig19363.1.1 vs. uniprot
Match: K8P0Z2_9BRAD (Uncharacterized protein n=8 Tax=Proteobacteria TaxID=1224 RepID=K8P0Z2_9BRAD)

HSP 1 Score: 151 bits (382), Expect = 8.940e-42
Identity = 76/95 (80.00%), Postives = 83/95 (87.37%), Query Frame = 1 
Query:   16 AMGPAGFVAVIAGWVTTEVGRQPYTVHGLLRTADSASRLDAPAVAASLLAFIVVYFIVFGAGVFYILKLMSQPPHRGEEGPSRGAPVRAAGITPS 300
            AMGPAGF+AV+AGWVTTE GRQP+TV+GLLRT DSAS LDAPAVA SLLAFIVVYFIVFG GVFYIL+LM +PPH GEEGP    P RAAGITP+
Sbjct:  365 AMGPAGFIAVLAGWVTTEAGRQPFTVYGLLRTVDSASPLDAPAVATSLLAFIVVYFIVFGMGVFYILRLMHEPPHHGEEGPRADTPARAAGITPA 459
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BLAST of mRNA_P-wetherbeei_contig19363.1.1 vs. uniprot
Match: F7QGU3_9BRAD (Putative Cytochrome bd2, subunit I n=4 Tax=Bradyrhizobiaceae TaxID=41294 RepID=F7QGU3_9BRAD)

HSP 1 Score: 151 bits (381), Expect = 1.330e-41
Identity = 72/94 (76.60%), Postives = 86/94 (91.49%), Query Frame = 1 
Query:   19 MGPAGFVAVIAGWVTTEVGRQPYTVHGLLRTADSASRLDAPAVAASLLAFIVVYFIVFGAGVFYILKLMSQPPHRGEEGPSRGAPVRAAGITPS 300
            MGPAGF+AV+AGWVTTEVGRQP+T++GLLRTADSAS L APAVA+SL+AF++VYFIVFG GV+YIL+LM +PPH GE+GPSR AP R AGITP+
Sbjct:  366 MGPAGFIAVLAGWVTTEVGRQPFTIYGLLRTADSASPLAAPAVASSLIAFVIVYFIVFGTGVYYILRLMHEPPHHGEQGPSRDAPTRTAGITPA 459
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BLAST of mRNA_P-wetherbeei_contig19363.1.1 vs. uniprot
Match: A0A380WC82_AFIFE (Cytochrome d ubiquinol oxidase subunit 1 n=5 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A380WC82_AFIFE)

HSP 1 Score: 150 bits (379), Expect = 2.530e-41
Identity = 74/97 (76.29%), Postives = 85/97 (87.63%), Query Frame = 1 
Query:   16 AMGPAGFVAVIAGWVTTEVGRQPYTVHGLLRTADSASRLDAPAVAASLLAFIVVYFIVFGAGVFYILKLMSQPPHRGEEGPSRGAPVRAAGITPSPS 306
            AMGPAGF+AV+AGW+TTE GRQPY V GLLRTADSAS LDAPAVA+SL+AFI+VYF VF  G+FYIL+LM++PPH GEEGPSR  PVRAAGI P P+
Sbjct:  365 AMGPAGFIAVLAGWITTEAGRQPYLVWGLLRTADSASPLDAPAVASSLIAFIIVYFAVFTIGIFYILRLMAKPPHHGEEGPSRDTPVRAAGIMPGPA 461
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19363.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A521M8W7_9HYPH9.060e-5089.69Cytochrome ubiquinol oxidase subunit I n=2 Tax=Alp... [more]
A0A1H8LK66_9PROT2.530e-4686.73Cytochrome d ubiquinol oxidase subunit I n=3 Tax=A... [more]
A0A259MTP4_9PROT1.640e-4583.67Cytochrome ubiquinol oxidase subunit I n=6 Tax=Alp... [more]
A0A1E4HL79_9PROT2.110e-4585.71Cytochrome D ubiquinol oxidase subunit I n=4 Tax=A... [more]
A0A7C9VRW4_9BRAD3.160e-4380.00Cytochrome ubiquinol oxidase subunit I (Fragment) ... [more]
A0A7V7PP62_9HYPH1.830e-4272.82Cytochrome ubiquinol oxidase subunit I n=1 Tax=Aur... [more]
UPI001F5E1E4E8.060e-4278.57cytochrome ubiquinol oxidase subunit I n=1 Tax=Phe... [more]
K8P0Z2_9BRAD8.940e-4280.00Uncharacterized protein n=8 Tax=Proteobacteria Tax... [more]
F7QGU3_9BRAD1.330e-4176.60Putative Cytochrome bd2, subunit I n=4 Tax=Bradyrh... [more]
A0A380WC82_AFIFE2.530e-4176.29Cytochrome d ubiquinol oxidase subunit 1 n=5 Tax=B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19363contigP-wetherbeei_contig19363:278..586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1205680.CAKO01000037_gene1239
Preferred namecydA
PFAMsCyt_bd_oxida_I
Model size309
Max annot lvl204441|Rhodospirillales
KEGG rclassRC00061
KEGG koko:K00425
KEGG TC3.D.4.3
KEGG ReactionR11325
KEGG Pathwayko00190,ko01100,ko02020,map00190,map01100,map02020
KEGG ModuleM00153
Hectar predicted targeting categorysignal anchor
Exons1
Evalue5.32e-46
EggNOG OGsCOG1271@1|root,COG1271@2|Bacteria,1MV60@1224|Proteobacteria,2TQMA@28211|Alphaproteobacteria,2JQM1@204441|Rhodospirillales
EC1.10.3.14
DescriptionCytochrome bd terminal oxidase subunit I
Cds size291
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186170.3222845-CDS-P-wetherbeei_contig19363:277..5681683186170.3222845-CDS-P-wetherbeei_contig19363:277..568Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19363 278..568 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186170.334336-UTR-P-wetherbeei_contig19363:568..5861683186170.334336-UTR-P-wetherbeei_contig19363:568..586Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19363 569..586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19363.1.1prot_P-wetherbeei_contig19363.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19363 278..568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19363.1.1

>prot_P-wetherbeei_contig19363.1.1 ID=prot_P-wetherbeei_contig19363.1.1|Name=mRNA_P-wetherbeei_contig19363.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=97bp
MGPAGFVAVIAGWVTTEVGRQPYTVHGLLRTADSASRLDAPAVAASLLAF
IVVYFIVFGAGVFYILKLMSQPPHRGEEGPSRGAPVRAAGITPSPSV
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mRNA from alignment at P-wetherbeei_contig19363:278..586-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19363.1.1 ID=mRNA_P-wetherbeei_contig19363.1.1|Name=mRNA_P-wetherbeei_contig19363.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig19363:278..586- (Phaeothamnion wetherbeei SAG_119_79)
CATGGGGCCGGCCCGGCGATGGGGCCGGCCGGCTTCGTGGCGGTGATCGC
CGGCTGGGTGACGACCGAGGTCGGGCGCCAGCCCTATACCGTGCATGGCC
TGCTGCGCACCGCCGATTCGGCCTCGCGGCTCGATGCGCCGGCCGTTGCG
GCCTCGCTGTTGGCCTTCATCGTGGTCTACTTCATCGTGTTCGGCGCCGG
GGTATTCTACATCCTGAAGCTGATGAGCCAGCCGCCGCACCGCGGCGAGG
AGGGCCCGAGCCGCGGCGCACCGGTGCGTGCGGCGGGCATCACCCCATCG
CCCTCAGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19363:278..586-

>mRNA_P-wetherbeei_contig19363.1.1 ID=mRNA_P-wetherbeei_contig19363.1.1|Name=mRNA_P-wetherbeei_contig19363.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig19363:278..586- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGCCGGCCGGCTTCGTGGCGGTGATCGCCGGCTGGGTGACGACCGA
GGTCGGGCGCCAGCCCTATACCGTGCATGGCCTGCTGCGCACCGCCGATT
CGGCCTCGCGGCTCGATGCGCCGGCCGTTGCGGCCTCGCTGTTGGCCTTC
ATCGTGGTCTACTTCATCGTGTTCGGCGCCGGGGTATTCTACATCCTGAA
GCTGATGAGCCAGCCGCCGCACCGCGGCGAGGAGGGCCCGAGCCGCGGCG
CACCGGTGCGTGCGGCGGGCATCACCCCATCGCCCTCAGTG
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