mRNA_P-wetherbeei_contig19326.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19326.1.1
Unique NamemRNA_P-wetherbeei_contig19326.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19326.1.1 vs. uniprot
Match: A0A7S3LYC1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LYC1_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.550e-6
Identity = 19/36 (52.78%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    1 AQCADNPVCKVEGLSGLCCPTAEGDYLGCCPTGPTS 108
            A+C+ +P CK  GL+G+CCP+ EG +LGCC T  T+
Sbjct:  372 AECSASPGCKALGLTGMCCPSPEGSFLGCCDTSSTT 407
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19326.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3LYC1_9STRA1.550e-652.78Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19326contigP-wetherbeei_contig19326:415..522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size108
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_009730.1
Cds size108
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186169.8555474-CDS-P-wetherbeei_contig19326:414..5221683186169.8555474-CDS-P-wetherbeei_contig19326:414..522Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19326 415..522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19326.1.1prot_P-wetherbeei_contig19326.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19326 415..522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19326.1.1

>prot_P-wetherbeei_contig19326.1.1 ID=prot_P-wetherbeei_contig19326.1.1|Name=mRNA_P-wetherbeei_contig19326.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=36bp
AQCADNPVCKVEGLSGLCCPTAEGDYLGCCPTGPTS
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mRNA from alignment at P-wetherbeei_contig19326:415..522-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19326.1.1 ID=mRNA_P-wetherbeei_contig19326.1.1|Name=mRNA_P-wetherbeei_contig19326.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=108bp|location=Sequence derived from alignment at P-wetherbeei_contig19326:415..522- (Phaeothamnion wetherbeei SAG_119_79)
GCTCAATGCGCAGACAATCCCGTCTGCAAAGTGGAAGGGCTTTCTGGACT
TTGCTGCCCGACCGCTGAAGGCGACTACTTGGGATGCTGCCCGACGGGAC
CCACGAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19326:415..522-

>mRNA_P-wetherbeei_contig19326.1.1 ID=mRNA_P-wetherbeei_contig19326.1.1|Name=mRNA_P-wetherbeei_contig19326.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=108bp|location=Sequence derived from alignment at P-wetherbeei_contig19326:415..522- (Phaeothamnion wetherbeei SAG_119_79)
GCTCAATGCGCAGACAATCCCGTCTGCAAAGTGGAAGGGCTTTCTGGACT
TTGCTGCCCGACCGCTGAAGGCGACTACTTGGGATGCTGCCCGACGGGAC
CCACGAGC
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