mRNA_P-wetherbeei_contig19324.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19324.1.1
Unique NamemRNA_P-wetherbeei_contig19324.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19324.1.1 vs. uniprot
Match: A0A7Z9UD89_9BACT (GAF domain-containing protein (Fragment) n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9UD89_9BACT)

HSP 1 Score: 193 bits (490), Expect = 2.790e-56
Identity = 113/197 (57.36%), Postives = 147/197 (74.62%), Query Frame = 1
Query:  319 PFSPRKLETHLELLLEPKLLDGLNRSLRYELQSTLEELISKYEELTVVYDSAEAIVSIADLEGVAQRITDQAADILDVDHASLMLL--ENTTLVIKAARGTRTDLVGK-SLEVGQEISGYVAREGKPVLIEDLSVDPVFGRNYSRDTDQARSLVSVPLKIKDRVLGVLNVNHKRSGEPFNSGDLKLLMALASLAAIS 900
            P S   L+  ++++ E    + L   LRYELQ+TLEELISKYEELTV+Y+SAE + ++ +LE V++ I DQAA+ILDV  ASLMLL  +  TL + AA+G R D VGK ++ VG+EISG VA+ GKP+LIEDL   P F R  +R  ++  SL+SVPLK++DR+LGVLNVN+K +GEPF SGDLK+LMALA LAAIS
Sbjct:   60 PLSDEALDNLVDMVREQLQSELL---LRYELQNTLEELISKYEELTVLYESAETVATVMNLEEVSRLILDQAAEILDVAQASLMLLNDDGDTLEVVAAQGVRKDTVGKVTVAVGEEISGKVAQTGKPILIEDLRNHPEFSRP-ARAEEEWTSLISVPLKVRDRILGVLNVNNKMNGEPFTSGDLKMLMALAQLAAIS 252          
BLAST of mRNA_P-wetherbeei_contig19324.1.1 vs. uniprot
Match: A0A7X9AFG0_9BURK (Response regulator n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AFG0_9BURK)

HSP 1 Score: 181 bits (459), Expect = 4.140e-54
Identity = 88/122 (72.13%), Postives = 103/122 (84.43%), Query Frame = 1
Query:    4 VPKTILVADDEPYVLRSLEFILKKEGYTVLTATNGQDAYDQATQQTPDLVFLDIQMPKMDGNTVCRQLRQHPERNGLYIIMITAKGQEADRLNSMESGANEFITKPFSPRKLETHLELLLEP 369
            +PKTILVADDEPYVLRSLEFILKKEGY VLTAT+GQDA ++  Q+ PDLVFLDIQMP+MDGNT+C+ LR+ P    L IIMITAKGQEADRL ++ESGA+EFITKP+SPRKL   +  +L P
Sbjct:    1 MPKTILVADDEPYVLRSLEFILKKEGYRVLTATDGQDALEKIRQELPDLVFLDIQMPRMDGNTLCQTLRKEPTTRDLRIIMITAKGQEADRLQALESGADEFITKPYSPRKLVERVREILGP 122          
BLAST of mRNA_P-wetherbeei_contig19324.1.1 vs. uniprot
Match: A0A7Z9UE46_9BACT (Response regulator n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9UE46_9BACT)

HSP 1 Score: 175 bits (443), Expect = 1.010e-51
Identity = 80/112 (71.43%), Postives = 98/112 (87.50%), Query Frame = 1
Query:    4 VPKTILVADDEPYVLRSLEFILKKEGYTVLTATNGQDAYDQATQQTPDLVFLDIQMPKMDGNTVCRQLRQHPERNGLYIIMITAKGQEADRLNSMESGANEFITKPFSPRKL 339
            +PKTI++ADDEP+VLRSLEFILKK+GY+V+TA NG++A ++  +  PDLVFLDIQMPKMDGN+V R LR  P    LYI+MITAKGQEADRLNS+ESGANE++TKP+SPRKL
Sbjct:    1 MPKTIVIADDEPHVLRSLEFILKKQGYSVVTAVNGEEALERVKESNPDLVFLDIQMPKMDGNSVLRHLRDDPNYQDLYIVMITAKGQEADRLNSLESGANEYVTKPYSPRKL 112          
BLAST of mRNA_P-wetherbeei_contig19324.1.1 vs. uniprot
Match: A0A1F4XPV2_9BACT (Uncharacterized protein n=1 Tax=candidate division Zixibacteria bacterium RBG_16_43_9 TaxID=1802784 RepID=A0A1F4XPV2_9BACT)

HSP 1 Score: 187 bits (474), Expect = 1.310e-50
Identity = 109/303 (35.97%), Postives = 179/303 (59.08%), Query Frame = 1
Query:    1 RVPKTILVADDEPYVLRSLEFILKKEGYTVLTATNGQDAYDQATQQTPDLVFLDIQMPKMDGNTVCRQLRQHPERNGLYIIMITAKGQEADRLNSMESGANEFITKPFSPRKLETHLELLLEPKLLDGLNRSLRYELQSTLEELISKYEELTVVYDSAEAIVSIADLEGVAQRITDQAADILDVDHASLMLLE--NTTLVIKAARGTRTDLVGKS-LEVGQEISGYVAREGKPVLIEDLSVDPVFGRNYSRDTDQARSLVSVPLKIKDRVLGVLNVNHKRSGEPFNSGDLKLLMALASLAAIS 900
            ++ + ILV DDE  +  SL+ +L   GY V T  +G++A     +   DL+  DI+MPK++G  + R+ +   + N   +I++T  G     + ++E GA ++  KP   + LE  ++  LE + +D   + L  EL++  EEL  + +EL  +Y +  A+ S   LE +   I   A  ++     S+M L+  +  L IKAA G   +++  + LE+G+ +SGYVA +G+P+LIED+  DP F R  SR+  + +SL+ VPLK+K+++LGV+N+N+K SGE FN+ DLKL+   AS AAI+
Sbjct:    4 KIQEKILVVDDELRMCESLKTLLSNSGYEVETVQDGEEAIRLINENNFDLIVADIKMPKVNGVEILRKAKSKDKEN--LVILMTGYGSLDTAIQAIEEGAYDYFLKPIEFQDLERAIKRGLEKRKVDSDRKRLLEELKNANEELKKRVDELNALYQAGRALSSTDTLEDLLANILSLATKVIGAKTGSIMFLDPDSKNLSIKAAIGLDKEIIMNTRLELGKGVSGYVAEKGQPLLIEDIEKDPRFKR-MSREKYETKSLICVPLKVKEKILGVINLNNKLSGEVFNAEDLKLISTFASQAAIA 303          
BLAST of mRNA_P-wetherbeei_contig19324.1.1 vs. uniprot
Match: A0A7V1E6X9_9ACTN (Response regulator n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V1E6X9_9ACTN)

HSP 1 Score: 184 bits (467), Expect = 1.650e-49
Identity = 108/301 (35.88%), Postives = 179/301 (59.47%), Query Frame = 1
Query:    4 VPKTILVADDEPYVLRSLEFILKKEGYTVLTATNGQDAYDQATQQTPDLVFLDIQMPKMDGNTVCRQLRQHPERNGLYIIMITAKGQEADRLNSMESGANEFITKPFSPRKLETHLELLLEPKLLDGLNRSLRYELQSTLEELISKYEELTVVYDSAEAIVSIADLEGVAQRITDQAADILDVDHASLMLL-ENTTLVIKAARGTRTDLVGK-SLEVGQEISGYVAREGKPVLIEDLSVDPVFGRNYSRDTDQARSLVSVPLKIKDRVLGVLNVNHKRSGEPFNSGDLKLLMALASLAAIS 900
            V + I++ADDE  ++  +   L+  GY +  A  G++A ++     PDLV LDI MP +DG  VCRQL+  P+   + II ++ K  E D +  +E GA ++I KPFSPR+L   +  +L+ K  D   +S+     S LE+   K + L+ +++ + A+V I D++ + Q I +Q+ D+ +    S+MLL E   L I  + G    +  +  +++ + ISG VA  GKP+LI ++  +  F R  SR   + +SL+ VP++++DRV+GVLNVN+K+SG+ FN  DL++L  LA+ A ++
Sbjct:    2 VMEKIVIADDEQAIVELISAKLRAMGYEITAANTGREAVEKTHLVNPDLVLLDILMPDIDGYEVCRQLKSDPKTKNIPIIFLSGKLMERDVIKGLELGAQDYILKPFSPRELAVRVRRVLDMK--DKTKKSVPAPALSHLEQ---KIDALSALHNVSTAMVGIRDIDELLQYILEQSLDVANAKIGSVMLLDEQNNLRISNSNGLSRQISNQIRIKLSEGISGSVAETGKPLLITNIEENNRFKRR-SRQKYETKSLICVPIRMRDRVIGVLNVNNKKSGDVFNQEDLEILTLLANQAGVA 296          
BLAST of mRNA_P-wetherbeei_contig19324.1.1 vs. uniprot
Match: A0A7X9AF28_9BURK (Sensor domain-containing diguanylate cyclase n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AF28_9BURK)

HSP 1 Score: 169 bits (428), Expect = 1.210e-45
Identity = 105/209 (50.24%), Postives = 142/209 (67.94%), Query Frame = 1
Query:  283 SMESGANEFITKPFSPRKLETHLELLLEPKLLDGLNRSLRYELQSTLEELISKYEELTVVYDSAEAIVSIADLEGVAQRITDQAADILDVDHASLMLLEN--TTLVIKAARGTRTDLVGK-SLEVGQEISGYVAREGKPVLIEDLSVDPVFGRNYSRDTDQARSLVSVPLKIKDRVLGVLNVNHKRSGEPFNSGDLKLLMALASLAAIS 900
            ++  G   F+ +  +P      L   +   L DG     R +L ST+ EL+ KYE L+V+YDSA  IVSI+ LE V+QRI D+A   L+V++ASLML+E   T+L + AARG R D  GK S+E+G+ I+GYVAR+GKP+L+EDLS   +  +  +R+  +  SL+SVPLK+KDRVLGVLNV HK +G PF +GDLKLL ALA LAA+S
Sbjct:   68 TVSGGVVGFLVEQRAPDSPAPDLFEAVRRLLADGAQT--RLDLDSTVAELVEKYELLSVLYDSAATIVSISSLEEVSQRILDEAVQTLEVEYASLMLIEESGTSLRVAAARGLRGDSGGKTSIELGEGIAGYVARQGKPLLVEDLSTHELACQ-ATREEYRPGSLLSVPLKVKDRVLGVLNV-HKTTGPPFRTGDLKLLSALADLAALS 272          
BLAST of mRNA_P-wetherbeei_contig19324.1.1 vs. uniprot
Match: A0A7C1IQQ0_9BACT (Response regulator n=1 Tax=candidate division Zixibacteria bacterium TaxID=2053527 RepID=A0A7C1IQQ0_9BACT)

HSP 1 Score: 166 bits (421), Expect = 3.390e-43
Identity = 102/301 (33.89%), Postives = 170/301 (56.48%), Query Frame = 1
Query:   10 KTILVADDEPYVLRSLEFILKKEGYTVLTATNGQDAYDQATQQTPDLVFLDIQMPKMDGNTVCRQLR-QHPERNGLYIIMITAKGQEADRLNSMESGANEFITKPFSPRKLETHLELLLEPKLLDGLNRSLRYELQSTLEELISKYEELTVVYDSAEAIVSIADLEGVAQRITDQAADILDVDHASLMLLE--NTTLVIKAARGTRTDLVGKS-LEVGQEISGYVAREGKPVLIEDLSVDPVFGRNYSRDTDQARSLVSVPLKIKDRVLGVLNVNHKRSGEPFNSGDLKLLMALASLAAIS 900
            K IL+ DDE  + +SL  +L +EGYT+ + T+G+ A  +      D++  DI+MPK DG TV ++ R + PE     ++++T        + ++ +GA E+I KP     L+  ++  ++ + +D   R+L  EL    + L  +  +   +Y +A +  S   L+ + +RI   AA +L     S+MLLE     L I+AA G   +++  + LEVG  I+G  A++G+P+L++DL  DP F R  S+   + +SL+ VPLK+ ++VLGVLN+  K+    F   DL LL A ASLA+++
Sbjct:    2 KRILIVDDEERICQSLTALLNREGYTIESVTDGEAAVSKIDTTPYDVILSDIKMPKADGMTVLKKARAKDPEA---LVVLMTGYASLESAMAAVSAGAYEYILKPVDIEDLKRLIKRAVDKREVDMAKRTLMVELSEANQRLKREISQKEALYQAALSFSSSEKLDDLLERIVTLAAGVLGAKVGSIMLLEPEGKYLTIRAALGLSREVIESTRLEVGASIAGQAAQDGRPILVKDLETDPRFAR-ASKQKYETKSLLCVPLKLGEKVLGVLNLADKKDASFFTEEDLNLLSAFASLASLA 298          
BLAST of mRNA_P-wetherbeei_contig19324.1.1 vs. uniprot
Match: A0A0S8J8Z8_9BACT (Uncharacterized protein n=1 Tax=candidate division Zixibacteria bacterium SM1_73 TaxID=1703424 RepID=A0A0S8J8Z8_9BACT)

HSP 1 Score: 161 bits (408), Expect = 2.390e-41
Identity = 101/298 (33.89%), Postives = 162/298 (54.36%), Query Frame = 1
Query:   16 ILVADDEPYVLRSLEFILKKEGYTVLTATNGQDAYDQATQQTPDLVFLDIQMPKMDGNTVCRQLRQHPERNGLYIIMITAKGQEADRLNSMESGANEFITKPFSPRKLETHLELLLEPKLLDGLNRSLRYELQSTLEELISKYEELTVVYDSAEAIVSIADLEGVAQRITDQAADILDVDHASLMLLEN--TTLVIKAARGTRTDLV-GKSLEVGQEISGYVAREGKPVLIEDLSVDPVFGRNYSRDTDQARSLVSVPLKIKDRVLGVLNVNHKRSGEPFNSGDLKLLMALASLAAIS 900
            ILV DDE  +  SL+ +L   GY V T   G+ A ++  +   DLV  DI+MP+ DG  + +  R   +     +I++T        ++++  GA +++ KP     L+  +   LE +  D     L  EL+    EL  +  EL  +Y + +++ S  DL  +  RI   A +++     S+ML++     L IK+A G  + ++ G  LE+G+ I+GYVA+   P++IED+  D  F R  S+     +SL+ VPLKIK+RVLGV+N++ K +G PF+  DL+LL   AS AAI+
Sbjct:    8 ILVVDDETRMCESLKTLLSGVGYDVTTVREGEKAIEKINKDDFDLVITDIKMPRFDGMDILKSARSKDQE--ALVILMTGFASLESAVSAINQGAYDYLMKPIEFSDLKLTIRRGLEKRRSDQARNKLLTELKEKNLELRKRVAELDALYQAGKSLSSTEDLGVLLDRIVSLATEVIGAKTGSIMLIQRPENVLTIKSAIGLDSKIIEGTKLELGKSIAGYVAQNETPLIIEDIEKDRKFKR-LSKKHYATKSLLCVPLKIKERVLGVINLSDKITGMPFSQDDLRLLTTFASQAAIA 302          
BLAST of mRNA_P-wetherbeei_contig19324.1.1 vs. uniprot
Match: A0A0S8IWY8_9BACT (Uncharacterized protein n=1 Tax=candidate division Zixibacteria bacterium SM23_73_3 TaxID=1703427 RepID=A0A0S8IWY8_9BACT)

HSP 1 Score: 159 bits (402), Expect = 1.570e-40
Identity = 96/298 (32.21%), Postives = 165/298 (55.37%), Query Frame = 1
Query:   16 ILVADDEPYVLRSLEFILKKEGYTVLTATNGQDAYDQATQQTPDLVFLDIQMPKMDGNTVCRQLRQHPERNGLYIIMITAKGQEADRLNSMESGANEFITKPFSPRKLETHLELLLEPKLLDGLNRSLRYELQSTLEELISKYEELTVVYDSAEAIVSIADLEGVAQRITDQAADILDVDHASLMLLEN--TTLVIKAARGTRTDLVGKS-LEVGQEISGYVAREGKPVLIEDLSVDPVFGRNYSRDTDQARSLVSVPLKIKDRVLGVLNVNHKRSGEPFNSGDLKLLMALASLAAIS 900
            ILV DDE  +  SL+ +L K GY V T   G++A  +  +   DLV  DI+MP++DG  + +  R+  E     +I++T        ++++  GA +++ KP    +L+  ++  LE +  +     L  EL+    EL  K  EL  +Y +  ++ +  DL+ +  +I   A  +++    S+ML++     L I+AA G    +V  + LE+G  I+GYVA++G P+++ D+  D  F  + S+     RSL+ VPL++KD +LGV+N++ K++ +PF   DL+LL   AS AAI+
Sbjct:    8 ILVVDDEKGMCDSLQTLLSKVGYEVTTVEEGEEALRKIQKDNFDLVITDIKMPRVDGLDILKAARKKDE--DALVILMTGYASLESAISAINQGAYDYLMKPIEFPELKLTIQRALEKRRAEEDKIKLLTELKKKNLELKKKLAELDALYKAGMSLSTTEDLKALLNKIVSLATRVIEAKSGSIMLIQKPENVLAIEAAIGLSPHIVKHTRLELGSSIAGYVAQKGTPLIVRDIKKDRRFS-HLSKKHYATRSLLCVPLRVKDNILGVINLSDKKTDDPFTQNDLRLLTTFASQAAIA 302          
BLAST of mRNA_P-wetherbeei_contig19324.1.1 vs. uniprot
Match: A0A524QZR2_9BACT (Response regulator n=1 Tax=candidate division Zixibacteria bacterium TaxID=2053527 RepID=A0A524QZR2_9BACT)

HSP 1 Score: 159 bits (401), Expect = 2.530e-40
Identity = 102/298 (34.23%), Postives = 167/298 (56.04%), Query Frame = 1
Query:   16 ILVADDEPYVLRSLEFILKKEGYTVLTATNGQDAYDQATQQTPDLVFLDIQMPKMDGNTVCRQLRQHPERNGLYIIMITAKGQEADRLNSMESGANEFITKPFSPRKLETHLELLLEPKLLDGLNRSLRYELQSTLEELISKYEELTVVYDSAEAIVSIADLEGVAQRITDQAADILDVDHASLMLLENTT--LVIKAARGTRTDLVGKS-LEVGQEISGYVAREGKPVLIEDLSVDPVFGRNYSRDTDQARSLVSVPLKIKDRVLGVLNVNHKRSGEPFNSGDLKLLMALASLAAIS 900
            ILV DDE  + RSLE +L K GY V TA +G++A     + + DLV  DI++P +DG  + +++R+  +     +I++TA       L ++  GA +++ KP    +L+   +  LE + L+   + L  ELQ T ++L  +  E+  +Y +   +    DL  +  +I   A D++     S+MLL+     L I AA G   ++   + +++G  I+GYVA+ G+ +LI D+  D  F R Y++   +  SLVS PLKIKDRVLGV+N++  + G  F   DL+LL+  A+ AAI+
Sbjct:   27 ILVVDDEERLCRSLESLLSKSGYDVQTALDGKEALRLYAESSFDLVISDIRLPGIDGIQLLQEIRK--QTTDAMVILMTAYASLETALAAINMGAYDYLMKPIEFTQLKLATKRALEKRELEIARQRLLDELQDTNKQLNRRVAEVDALYQAGILLSQSHDLHKLLTKIIAVALDVIGATVGSVMLLDEHKGELTISAAVGVSEEVKRSTRVKLGNSIAGYVAQSGEALLITDIFTDERF-RQYAKGNYETNSLVSAPLKIKDRVLGVINLSDPKHGTAFAENDLRLLVTFAAQAAIA 321          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19324.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Z9UD89_9BACT2.790e-5657.36GAF domain-containing protein (Fragment) n=1 Tax=P... [more]
A0A7X9AFG0_9BURK4.140e-5472.13Response regulator n=1 Tax=Burkholderiales bacteri... [more]
A0A7Z9UE46_9BACT1.010e-5171.43Response regulator n=1 Tax=Phycisphaerales bacteri... [more]
A0A1F4XPV2_9BACT1.310e-5035.97Uncharacterized protein n=1 Tax=candidate division... [more]
A0A7V1E6X9_9ACTN1.650e-4935.88Response regulator n=1 Tax=Actinomycetia bacterium... [more]
A0A7X9AF28_9BURK1.210e-4550.24Sensor domain-containing diguanylate cyclase n=1 T... [more]
A0A7C1IQQ0_9BACT3.390e-4333.89Response regulator n=1 Tax=candidate division Zixi... [more]
A0A0S8J8Z8_9BACT2.390e-4133.89Uncharacterized protein n=1 Tax=candidate division... [more]
A0A0S8IWY8_9BACT1.570e-4032.21Uncharacterized protein n=1 Tax=candidate division... [more]
A0A524QZR2_9BACT2.530e-4034.23Response regulator n=1 Tax=candidate division Zixi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19324contigP-wetherbeei_contig19324:75..1293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog98439.AJLL01000106_gene3376
PFAMsGAF,HATPase_c,HisKA,PAS_3,Response_reg
Model size900
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.39e-28
EggNOG OGsCOG2199@1|root,COG2202@1|root,COG2203@1|root,COG4251@1|root,COG2202@2|Bacteria,COG2203@2|Bacteria,COG3706@2|Bacteria,COG4251@2|Bacteria,1G1Z5@1117|Cyanobacteria,1JHUP@1189|Stigonemataceae
DescriptionGAF domain
Cds size900
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186169.8077817-CDS-P-wetherbeei_contig19324:74..4101683186169.8077817-CDS-P-wetherbeei_contig19324:74..410Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19324 75..410 +
1683186169.8188612-CDS-P-wetherbeei_contig19324:459..5181683186169.8188612-CDS-P-wetherbeei_contig19324:459..518Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19324 460..518 +
1683186169.8280287-CDS-P-wetherbeei_contig19324:788..12931683186169.8280287-CDS-P-wetherbeei_contig19324:788..1293Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19324 789..1293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19324.1.1prot_P-wetherbeei_contig19324.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19324 75..1293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19324.1.1

>prot_P-wetherbeei_contig19324.1.1 ID=prot_P-wetherbeei_contig19324.1.1|Name=mRNA_P-wetherbeei_contig19324.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=300bp
RVPKTILVADDEPYVLRSLEFILKKEGYTVLTATNGQDAYDQATQQTPDL
VFLDIQMPKMDGNTVCRQLRQHPERNGLYIIMITAKGQEADRLNSMESGA
NEFITKPFSPRKLETHLELLLEPKLLDGLNRSLRYELQSTLEELISKYEE
LTVVYDSAEAIVSIADLEGVAQRITDQAADILDVDHASLMLLENTTLVIK
AARGTRTDLVGKSLEVGQEISGYVAREGKPVLIEDLSVDPVFGRNYSRDT
DQARSLVSVPLKIKDRVLGVLNVNHKRSGEPFNSGDLKLLMALASLAAIS
back to top

mRNA from alignment at P-wetherbeei_contig19324:75..1293+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19324.1.1 ID=mRNA_P-wetherbeei_contig19324.1.1|Name=mRNA_P-wetherbeei_contig19324.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1219bp|location=Sequence derived from alignment at P-wetherbeei_contig19324:75..1293+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGTGCCCAAGACGATTCTGGTTGCTGATGATGAGCCCTACGTTCTCCG TTCGCTCGAGTTTATTCTCAAGAAGGAGGGCTATACCGTCCTGACCGCCA CCAACGGCCAGGATGCCTATGATCAGGCCACACAGCAGACTCCCGATCTG GTGTTTCTCGACATCCAGATGCCCAAAATGGACGGCAATACGGTTTGCCG CCAGCTGCGCCAGCATCCCGAGCGCAACGGTCTCTACATCATTATGATCA CAGCCAAAGGGCAGGAGGCCGATCGCCTCAATAGTATGGAATCGGGCGCC AACGAGTTCATCACCAAGCCTTTTTCCCCGCGCAAAGTCGTGTCCCGCGT CAAGGAGCTGCTAGGAGAATAGAATGCCGCCTCAGCTAGAAACGCATCTA GAGCTGTTGCTTGAGCCCAAATTGCTCGACGGTCTCAACCGATCGTTTGC CGATCACGGCCTTCAGCTGGCTTTCTTTTTGCCCGACGGGCAGCTTCACT GCGCGCCCATCAAAGAGTGCTCGGATGGCACATGCCCCCCTCCCCCGCCG GCTGACTTGACCCCCTCCGTCGCGTCTTGCGGACGCACCCTCACCTATCA AGCTCTCTCCATCGCCCAGGGAAACCTAGGCCACATCCTCGAGATGCGCG AGCCGGGCTGCACAATTCCCAGCCTGCTCGAGATCGCGGCCGATCTCATC TGTCGCGAGGCCAGTCTGCGCTACGAGCTGCAGAGCACGCTGGAAGAGCT CATTTCCAAGTACGAAGAGCTCACCGTCGTTTACGATTCAGCCGAAGCTA TCGTAAGTATCGCCGATCTCGAAGGGGTCGCCCAGCGTATCACGGATCAG GCAGCCGACATTCTCGATGTCGACCACGCATCTCTAATGTTGCTGGAAAA TACCACCCTCGTCATCAAAGCGGCTCGCGGAACGCGCACCGATCTCGTCG GTAAGTCGCTCGAAGTGGGTCAAGAGATTTCCGGCTACGTGGCGCGCGAG GGCAAGCCCGTCTTGATTGAGGATCTTTCGGTCGATCCCGTCTTTGGACG TAACTACAGCCGTGACACCGATCAGGCCCGCTCCCTGGTCAGCGTCCCCC TCAAGATAAAAGACCGCGTGCTCGGCGTTCTCAACGTCAATCATAAGCGT AGCGGCGAGCCCTTCAACTCAGGCGATCTGAAGCTCCTGATGGCCCTGGC GTCGCTGGCGGCGATCTCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig19324:75..1293+

>mRNA_P-wetherbeei_contig19324.1.1 ID=mRNA_P-wetherbeei_contig19324.1.1|Name=mRNA_P-wetherbeei_contig19324.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=900bp|location=Sequence derived from alignment at P-wetherbeei_contig19324:75..1293+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGTGCCCAAGACGATTCTGGTTGCTGATGATGAGCCCTACGTTCTCCG
TTCGCTCGAGTTTATTCTCAAGAAGGAGGGCTATACCGTCCTGACCGCCA
CCAACGGCCAGGATGCCTATGATCAGGCCACACAGCAGACTCCCGATCTG
GTGTTTCTCGACATCCAGATGCCCAAAATGGACGGCAATACGGTTTGCCG
CCAGCTGCGCCAGCATCCCGAGCGCAACGGTCTCTACATCATTATGATCA
CAGCCAAAGGGCAGGAGGCCGATCGCCTCAATAGTATGGAATCGGGCGCC
AACGAGTTCATCACCAAGCCTTTTTCCCCGCGCAAACTAGAAACGCATCT
AGAGCTGTTGCTTGAGCCCAAATTGCTCGACGGTCTCAACCGATCTCTGC
GCTACGAGCTGCAGAGCACGCTGGAAGAGCTCATTTCCAAGTACGAAGAG
CTCACCGTCGTTTACGATTCAGCCGAAGCTATCGTAAGTATCGCCGATCT
CGAAGGGGTCGCCCAGCGTATCACGGATCAGGCAGCCGACATTCTCGATG
TCGACCACGCATCTCTAATGTTGCTGGAAAATACCACCCTCGTCATCAAA
GCGGCTCGCGGAACGCGCACCGATCTCGTCGGTAAGTCGCTCGAAGTGGG
TCAAGAGATTTCCGGCTACGTGGCGCGCGAGGGCAAGCCCGTCTTGATTG
AGGATCTTTCGGTCGATCCCGTCTTTGGACGTAACTACAGCCGTGACACC
GATCAGGCCCGCTCCCTGGTCAGCGTCCCCCTCAAGATAAAAGACCGCGT
GCTCGGCGTTCTCAACGTCAATCATAAGCGTAGCGGCGAGCCCTTCAACT
CAGGCGATCTGAAGCTCCTGATGGCCCTGGCGTCGCTGGCGGCGATCTCG
back to top