mRNA_P-wetherbeei_contig19323.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19323.2.1
Unique NamemRNA_P-wetherbeei_contig19323.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19323.2.1 vs. uniprot
Match: A0A537SQC0_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537SQC0_9PROT)

HSP 1 Score: 126 bits (317), Expect = 1.080e-36
Identity = 57/66 (86.36%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 FITMKSARGHSYKACELALEQIASKRFPLEKITTHRFGLKDVDLAIRSVGGKGVPDVIHASLMPWE 198
            FIT+KSARGHS+KACELAL Q+AS+RFPLEK+TTHRFGLKDVDLAIRSVGG+G+PDVIHASLMPW+
Sbjct:   21 FITIKSARGHSFKACELALAQLASRRFPLEKVTTHRFGLKDVDLAIRSVGGEGIPDVIHASLMPWQ 86
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BLAST of mRNA_P-wetherbeei_contig19323.2.1 vs. uniprot
Match: A0A536W3G2_9PROT (Zinc-binding dehydrogenase (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536W3G2_9PROT)

HSP 1 Score: 127 bits (318), Expect = 4.950e-36
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 FITMKSARGHSYKACELALEQIASKRFPLEKITTHRFGLKDVDLAIRSVGGKGVPDVIHASLMPWE 198
            FIT+KSARGHSYKACELAL Q+ASKRFPLEK+TTH FGLKDVDLAIRSVGG+GVPDVIHASLMPW+
Sbjct:   84 FITIKSARGHSYKACELALAQLASKRFPLEKVTTHSFGLKDVDLAIRSVGGQGVPDVIHASLMPWK 149
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BLAST of mRNA_P-wetherbeei_contig19323.2.1 vs. uniprot
Match: A0A536YF99_9PROT (Alcohol dehydrogenase (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536YF99_9PROT)

HSP 1 Score: 124 bits (310), Expect = 1.850e-35
Identity = 57/66 (86.36%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 FITMKSARGHSYKACELALEQIASKRFPLEKITTHRFGLKDVDLAIRSVGGKGVPDVIHASLMPWE 198
            FIT+KSARGHSYKACELAL Q+ASKRF LEK+TTHRFGLKDVDLAI+SVGG+GVPDVIHASL+PW+
Sbjct:   34 FITIKSARGHSYKACELALAQLASKRFALEKVTTHRFGLKDVDLAIKSVGGQGVPDVIHASLLPWK 99
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BLAST of mRNA_P-wetherbeei_contig19323.2.1 vs. uniprot
Match: A0A1Q7BST4_9PROT (Alcohol dehydrogenase n=9 Tax=Proteobacteria TaxID=1224 RepID=A0A1Q7BST4_9PROT)

HSP 1 Score: 130 bits (327), Expect = 4.980e-35
Identity = 60/66 (90.91%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 FITMKSARGHSYKACELALEQIASKRFPLEKITTHRFGLKDVDLAIRSVGGKGVPDVIHASLMPWE 198
            FIT+KSARGHS+KACELALEQ+ASKRFPLEK+TTHRFGLKDVDLAI+SVGG+GVPDVIHASLMPWE
Sbjct:  310 FITIKSARGHSFKACELALEQLASKRFPLEKVTTHRFGLKDVDLAIKSVGGEGVPDVIHASLMPWE 375
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BLAST of mRNA_P-wetherbeei_contig19323.2.1 vs. uniprot
Match: A0A1F4BKU9_9PROT (Alcohol dehydrogenase n=7 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4BKU9_9PROT)

HSP 1 Score: 128 bits (322), Expect = 2.440e-34
Identity = 58/66 (87.88%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 FITMKSARGHSYKACELALEQIASKRFPLEKITTHRFGLKDVDLAIRSVGGKGVPDVIHASLMPWE 198
            F+T+KSARGHSY+ACELAL Q+AS+RFPLEK+TTHRFGLKDVDLAIRSVGGKGVPDVIHASLMPW+
Sbjct:  304 FVTIKSARGHSYRACELALAQLASRRFPLEKVTTHRFGLKDVDLAIRSVGGKGVPDVIHASLMPWQ 369
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BLAST of mRNA_P-wetherbeei_contig19323.2.1 vs. uniprot
Match: A0A521YRB7_9PROT (Alcohol dehydrogenase n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A521YRB7_9PROT)

HSP 1 Score: 127 bits (319), Expect = 4.520e-34
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:    1 FITMKSARGHSYKACELALEQIASKRFPLEKITTHRFGLKDVDLAIRSVGGKGVPDVIHASLMPW 195
            FIT+KSARGHSYKACELAL Q+ASKRFPLEKITTHRFGLKDVDLAI+SVGG GVPDVIHASLMPW
Sbjct:  282 FITLKSARGHSYKACELALAQLASKRFPLEKITTHRFGLKDVDLAIKSVGGHGVPDVIHASLMPW 346
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BLAST of mRNA_P-wetherbeei_contig19323.2.1 vs. uniprot
Match: A0A7X1TUY9_9PROT (Alcohol dehydrogenase catalytic domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7X1TUY9_9PROT)

HSP 1 Score: 126 bits (317), Expect = 1.330e-33
Identity = 57/65 (87.69%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 FITMKSARGHSYKACELALEQIASKRFPLEKITTHRFGLKDVDLAIRSVGGKGVPDVIHASLMPW 195
            F+T+KSARGHSY+ACELAL+Q+ASKRFPLEK+TTHRFGLKDVDLAIRSVGG+GVPDVIHASL+PW
Sbjct:  304 FVTIKSARGHSYQACELALQQLASKRFPLEKVTTHRFGLKDVDLAIRSVGGQGVPDVIHASLLPW 368
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BLAST of mRNA_P-wetherbeei_contig19323.2.1 vs. uniprot
Match: A0A2V8JS10_9BACT (Alcohol dehydrogenase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8JS10_9BACT)

HSP 1 Score: 125 bits (315), Expect = 1.460e-33
Identity = 59/65 (90.77%), Postives = 64/65 (98.46%), Query Frame = 1 
Query:    4 ITMKSARGHSYKACELALEQIASKRFPLEKITTHRFGLKDVDLAIRSVGGKGVPDVIHASLMPWE 198
            ITMKSARGHS++ACELALEQIASKRFPLEKITTHRFGLKDVDLAI+SVGG GVPDVIHASL+PW+
Sbjct:  273 ITMKSARGHSFRACELALEQIASKRFPLEKITTHRFGLKDVDLAIKSVGGYGVPDVIHASLLPWK 337
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BLAST of mRNA_P-wetherbeei_contig19323.2.1 vs. uniprot
Match: A0A537D440_9PROT (Zinc-binding dehydrogenase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537D440_9PROT)

HSP 1 Score: 125 bits (314), Expect = 2.480e-33
Identity = 57/66 (86.36%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 FITMKSARGHSYKACELALEQIASKRFPLEKITTHRFGLKDVDLAIRSVGGKGVPDVIHASLMPWE 198
            FIT+KSARGHSY+ACELAL+Q+ASKRFPLE+ITTHRFGLKDVDLAI+SVGG GVPDVIHASL+PW+
Sbjct:  282 FITIKSARGHSYRACELALQQLASKRFPLERITTHRFGLKDVDLAIKSVGGHGVPDVIHASLLPWK 347
[Close]
BLAST of mRNA_P-wetherbeei_contig19323.2.1 vs. uniprot
Match: UPI001C20287C (zinc-binding dehydrogenase n=1 Tax=Caulobacter sp. S45 TaxID=1641861 RepID=UPI001C20287C)

HSP 1 Score: 125 bits (314), Expect = 2.480e-33
Identity = 58/65 (89.23%), Postives = 64/65 (98.46%), Query Frame = 1 
Query:    4 ITMKSARGHSYKACELALEQIASKRFPLEKITTHRFGLKDVDLAIRSVGGKGVPDVIHASLMPWE 198
            IT+KSARGHSY+ACELALEQ+ASKRFPL+KITTH+FGLKDVDLAIRSVG +GVPDVIHASLMPWE
Sbjct:  283 ITIKSARGHSYRACELALEQLASKRFPLDKITTHKFGLKDVDLAIRSVGNQGVPDVIHASLMPWE 347
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19323.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A537SQC0_9PROT1.080e-3686.36Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A536W3G2_9PROT4.950e-3689.39Zinc-binding dehydrogenase (Fragment) n=1 Tax=Beta... [more]
A0A536YF99_9PROT1.850e-3586.36Alcohol dehydrogenase (Fragment) n=1 Tax=Betaprote... [more]
A0A1Q7BST4_9PROT4.980e-3590.91Alcohol dehydrogenase n=9 Tax=Proteobacteria TaxID... [more]
A0A1F4BKU9_9PROT2.440e-3487.88Alcohol dehydrogenase n=7 Tax=unclassified Betapro... [more]
A0A521YRB7_9PROT4.520e-3492.31Alcohol dehydrogenase n=2 Tax=unclassified Betapro... [more]
A0A7X1TUY9_9PROT1.330e-3387.69Alcohol dehydrogenase catalytic domain-containing ... [more]
A0A2V8JS10_9BACT1.460e-3390.77Alcohol dehydrogenase n=1 Tax=Acidobacteria bacter... [more]
A0A537D440_9PROT2.480e-3386.36Zinc-binding dehydrogenase n=1 Tax=Betaproteobacte... [more]
UPI001C20287C2.480e-3389.23zinc-binding dehydrogenase n=1 Tax=Caulobacter sp.... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19323contigP-wetherbeei_contig19323:1068..1268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1231391.AMZF01000094_gene105
PFAMsADH_N,ADH_zinc_N
Model size201
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.06e-26
EggNOG OGsCOG1063@1|root,COG1063@2|Bacteria,1MXHK@1224|Proteobacteria,2W9GK@28216|Betaproteobacteria,3T7Q9@506|Alcaligenaceae
DescriptionAlcohol dehydrogenase GroES-like domain
Cds size192
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186169.7657986-CDS-P-wetherbeei_contig19323:1067..12591683186169.7657986-CDS-P-wetherbeei_contig19323:1067..1259Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19323 1068..1259 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186169.777772-UTR-P-wetherbeei_contig19323:1259..12681683186169.777772-UTR-P-wetherbeei_contig19323:1259..1268Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19323 1260..1268 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19323.2.1prot_P-wetherbeei_contig19323.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19323 1068..1259 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19323.2.1

>prot_P-wetherbeei_contig19323.2.1 ID=prot_P-wetherbeei_contig19323.2.1|Name=mRNA_P-wetherbeei_contig19323.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=64bp
MKSARGHSYKACELALEQIASKRFPLEKITTHRFGLKDVDLAIRSVGGKG
VPDVIHASLMPWE*
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mRNA from alignment at P-wetherbeei_contig19323:1068..1268-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19323.2.1 ID=mRNA_P-wetherbeei_contig19323.2.1|Name=mRNA_P-wetherbeei_contig19323.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig19323:1068..1268- (Phaeothamnion wetherbeei SAG_119_79)
TTCATCACCATGAAGAGCGCGCGCGGCCATAGCTACAAGGCCTGCGAGCT
GGCACTGGAGCAGATCGCCTCCAAGCGCTTCCCGCTGGAGAAGATCACCA
CGCATCGATTCGGGCTGAAGGACGTCGATCTCGCCATCCGCTCGGTCGGC
GGCAAGGGCGTGCCGGATGTGATCCACGCATCGCTGATGCCGTGGGAGTG
A
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19323:1068..1268-

>mRNA_P-wetherbeei_contig19323.2.1 ID=mRNA_P-wetherbeei_contig19323.2.1|Name=mRNA_P-wetherbeei_contig19323.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig19323:1068..1268- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGAGCGCGCGCGGCCATAGCTACAAGGCCTGCGAGCTGGCACTGGA
GCAGATCGCCTCCAAGCGCTTCCCGCTGGAGAAGATCACCACGCATCGAT
TCGGGCTGAAGGACGTCGATCTCGCCATCCGCTCGGTCGGCGGCAAGGGC
GTGCCGGATGTGATCCACGCATCGCTGATGCCGTGGGAGTGA
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