mRNA_P-wetherbeei_contig1932.3.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1932.3.3
Unique NamemRNA_P-wetherbeei_contig1932.3.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1932.3.3 vs. uniprot
Match: D8LSB0_ECTSI (DNA-directed primase/polymerase protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSB0_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 5.860e-47
Identity = 204/663 (30.77%), Postives = 259/663 (39.06%), Query Frame = 3
Query:  516 HWYELIREHEPCCMYFDLEFGRRLNPGLDGDALVRLWIAAVAAKLRRDLGIELGTGASSIVDLDSSTDAKFSRHVILHMPDGRLFRDNVHVGRFVHQLVAELQ---------TAADAPAVGNGDDVCPANIGGDLSGIGAVSAAAADAAGAVVNEXXXXXXXXXXDAAGVGDGCCSAATGPTDEGMGPPEGQTPLFTVTVAPSADDGDAPGEPCGLKAIEAAFLTPRAMVDSLSPQTFLTPKALREASIDADGASSAMKGFEGVTASETVQAALKQLWVRTDRGI-AFFADTSVYSRNRCFRLLGSCKYGKTAVLKQALGCSDRRSGD----AGNGGGRNTHDGSCGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXGIGVFLEAREK----------LLLDSLVVPVGAPPLPLGKLLTVVGPSCLTRL-RLGAPPRDRRSGGGRSGSDNADXXXXXXXXXXXXASRGP--GGS---AIGRSTHSTARVGGHG-ASSPFPSLDAFVLSQARRGGVQGEIRAWHYRPG--------------------------SGIV------------------TYEMTKNRFCRNNGRPHRSNNVLFEADLRAGALFQRCHDSQCRAAGFRSEAMPLPPLALPSPAVLAELDFEATLAEAMRRDNFDPGKW 2279
            H YE+IRE  PC MYFDLEF R  NPGLDG+ LV  WI  VA KL ++ G+ +GT  S+++DLDSST  KFSRH+I H+P  +LF DN HVGRFV+ L AEL+         T A  P +G  DD+ P           A +AAA      V+              AG GD       G T      P    P+ TV  AP                                                                      AL++LWV+   G    FAD SVY+RNRCFRLLGS K+GK A L+ A   +++R+ D     G GGG      S                                    L  RE+          LL DSLVVPV     P    LTV G +   R  R G+  +      G   S                A RG   G S     G S     RV   G   SPFP++D+F+ +   +GG +GE+R W Y  G                          +G+V                  T+++  NR+C N GR H+SN+V    DL  G + Q CHD +CR +G+RS  + LP    P    L   + E  LA AMR     P  W
Sbjct:  697 HMYEIIREGRPCRMYFDLEFARGPNPGLDGEELVCAWINVVAGKLHQEFGVSVGT--SNVLDLDSSTPKKFSRHLIFHLPGDQLFLDNSHVGRFVNSLAAELESWRAPQSPSTPATPPGIGR-DDIVPT----------ATAAAAVAVPHCVIRSGGGN--------AGGGD-----HLGGTPSSDDFPTSAVPVPTVATAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------ALERLWVKDGDGRRVLFADVSVYTRNRCFRLLGSSKFGKAACLRVAA--TNKRTLDHMVWRGRGGGTFARTSS---------------------------------SSLLSPREQKQQLRDVARTLLHDSLVVPVTPRSSPAELFLTVGGGTGQHRYSRFGSCRKQT----GDCSSSQQRQQHGWSTNGTISAERGEHRGSSQDHGSGSSDGDGWRVSSQGFGPSPFPAVDSFLRTLVGQGGTRGELRQWSYTAGQVPPRTVEHDHQEXXXXXXXXXXAGGTGLVSPGSQSAPQPPATVVRKLTHQVANNRWCWNIGRAHKSNHVFLVTDLSRGEVRQHCHDQECRRSGYRSNPVRLPIGVAPLEDDLEAFELELGLAAAMRE---SPADW 1264          
BLAST of mRNA_P-wetherbeei_contig1932.3.3 vs. uniprot
Match: A0A835YVT3_9STRA (DNA-directed primase/polymerase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVT3_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.010e-29
Identity = 87/218 (39.91%), Postives = 119/218 (54.59%), Query Frame = 3
Query:  264 LPRVLSNLHERFA---RTRWQESRGETFPRQELAFARFDELLLQASEPV-----------HFYKIMAYELAGGGRRGYAVVDMRRFAPHYL--TSNPVD--NHWYELIREHEPCCMYFDLEFGRRLNPGLDGDALVRLWIAAVAAKLRRDLGIELGTGASSIVDLDSSTDAKFSRHVILHMPDGRLFRDNVHVGRFVHQLVAE-------LQTAADAP 842
            LP  +  + +R A   RT  ++   + FP+Q+LAF   D++   +                  ++++ E++  G R Y V +   F   Y+  T +P    +HWYE+IRE  PC +YFD+EF R  NP LDGDALVR W+ AV AKL  D G  + +    IV LDS+T+ KFSRHVILH+  GRLF  NVH G  V+QL+ E         TAA AP
Sbjct:  100 LPPFMHAVKKRTALDARTAKEKRAYKVFPKQDLAFEHQDKITSASQAEAGSQSQSTAGQQRSTRVLSQEVSSKGGRQYVVWEWAAFERWYVRRTLDPKGKRSHWYEVIREGMPCRLYFDMEFSREANPTLDGDALVRRWLDAVQAKLLHDHGATVES--DGIVQLDSTTERKFSRHVILHLEGGRLFASNVHAGHLVNQLLGEQLLAHAKATTAAAAP 315          
BLAST of mRNA_P-wetherbeei_contig1932.3.3 vs. uniprot
Match: C3YHN8_BRAFL (DNA-directed primase/polymerase protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YHN8_BRAFL)

HSP 1 Score: 132 bits (332), Expect = 1.170e-27
Identity = 159/623 (25.52%), Postives = 223/623 (35.79%), Query Frame = 3
Query:  336 FPRQELAFARFDELLLQASEPVHFYKIMAYELAGGGRRGYAVVDMRRFAPHYLTSNP-VDNHWYELIREHEPCCMYFDLEFGRRLNPGLDGDALVRLWIAAVAAKLRRDLGIELGTGASSIVDLDSSTDAKFSRHVILHMPDGRLFRDNVHVGRFVHQLVAELQTAADAPAVGNGDDVCPANIGGDLSGIGAVSAAAADAAGAVVNEXXXXXXXXXXDAAGVGDGCCSAATGPTDEGMGPPEGQTPLFTVTVAPSADDGDAPGEPCGLKAIEAAFLTPRAMVDSLSPQTFLTPKALREASIDADGASSAMKGFEGVTASETVQAALKQLWVRTDRGI-AFFADTSVYSRNRCFRLLGSCKYGKTAVLKQALGCSDRRSGDAGNGGGRNTHDGSCGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXGIGVFLEAREKLLLDSLVVPVGAPPLPLGKLLTVVGPSCLTRLRLGAPPRDRRSGGGRSGSDNADXXXXXXXXXXXXASRGPGGSAIGRSTHSTARVGGHGASSPFPSLDAFVLSQARRGGVQGEIRAWHYRPGSGIVTYEMTKNRFCRNNGRPHRSNNVLFEADLRAGALFQRCHDSQCRAAGFRSEAMPLPPLALPS 2198
            FPRQ+LAF    +      + VH +       +  G+R Y V    +F   Y   +P +D H+YE+I E   C +YFDLEF + +NPG DG A+V+  I  V   L++     L      ++DL+SST+ KFS H+I H+P G  F+DN+H G FVHQ+  +L    +  +   GD                          A + E                                      P                                                                                  L V+   G    F D  VY++NR FRL  S K G+ A L  A  C  +        GG+ + + S                             XX         +++ L+SLV  V   P  L  L    G S   R+R         SG    G D                           ST    ++ G  +SSP+P +DA+V+ QA RGGV G IR W Y     ++ Y++  NR+C N GR HRSN+V+F ADL+   L+Q+CHD  CRA  ++S   PLP   LP+
Sbjct:   57 FPRQKLAF----DFARCCKQDVHVFACEVEGESENGQRRYLVTTYEQFWDMYSVLHPNMDGHFYEVIPEGATCHLYFDLEFSKVVNPGSDGVAMVQTLIRCVWWLLKKKYN--LTCTEDHVLDLESSTEEKFSHHLIFHLP-GAAFQDNIHAGNFVHQMCEKLHLCTEQQSPLAGD--------------------------AELQELREA---------------------------------VPGLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVVKNKAGERVLFIDAGVYTKNRNFRLYQSTKLGRRAPLLVAPQCKYKL-----REGGKVSWEES----------------------------KXXXXXXXXXXDKQVFLESLVSNVRFSP-ELRVLRCEEGNSSSGRVRT-----SHESGDNSRGRD---------------------------STTRDDQLSGC-SSSPYPEVDAYVVLQASRGGVHGGIRQWTYFSQGEVLMYDIVHNRWCENIGRAHRSNHVMFVADLKRQVLYQKCHDPVCRAQNYKSPDRPLPAEVLPA 546          
BLAST of mRNA_P-wetherbeei_contig1932.3.3 vs. uniprot
Match: UPI0013905510 (DNA-directed primase/polymerase protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013905510)

HSP 1 Score: 130 bits (326), Expect = 1.190e-27
Identity = 73/164 (44.51%), Postives = 97/164 (59.15%), Query Frame = 3
Query:  330 ETFPRQELAFARFDELLLQASEPVHFYKIMAYELAGGGRRGYAVVDMRRFAPHYLTSNPVDNHWYELIREHEPCCMYFDLEFGRRLNPGLDGDALVRLWIAAVAAKLRRDLGIELGTGASSIVDLDSSTDAKFSRHVILHMPDGRLFRDNVHVGRFVHQLVAEL 821
            + FPRQ+LAF    + +   SE VH   + A EL   G+R Y V  +  F   Y +    D H+YE+I E   C +YFDLEF R  N  L+G  +V ++I  V + L+   GI+       I+DLDSSTD KFSRH+I HMP G +F+DNVH G FVHQ+ +EL
Sbjct:   59 KVFPRQQLAF----DFVKSCSEDVH---VFAEELGDDGKRQYIVSTLDEFWNTYRSIQAEDRHYYEVIEEGAACRLYFDLEFKREFNQDLNGPEMVEIFIEYVCSHLKESFGIDCRR--KHILDLDSSTDTKFSRHLIFHMP-GAVFKDNVHAGNFVHQICSEL 212          
BLAST of mRNA_P-wetherbeei_contig1932.3.3 vs. uniprot
Match: A0A1D1ZUK7_AUXPR (DNA-directed primase/polymerase protein n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZUK7_AUXPR)

HSP 1 Score: 130 bits (327), Expect = 1.780e-27
Identity = 82/232 (35.34%), Postives = 120/232 (51.72%), Query Frame = 3
Query:  213 PGAAYCHPAA-------IGASTDGLPRVLSNLHERFARTRWQESR-GETFPRQELAFARFDELLLQASEPVHFYKIMAYELAGGGRRGYAVVDMRRFAPHYLTSNPVDNHWYELIREHEPCCMYFDLEFGRRLNPGLDGDALVRLWIAAVAAKLRRDLGIELGTGASSIVDLDSSTDAKFSRHVILHMPDGRLFRDNVHVGRFVHQLVAE---------LQTAADAPAVGNG 857
            PG+  C PA        + A  + + R L+ +H R  +    E+     FP Q+ A    D L +Q   P+   ++ + E +G G+R + V  +  F   Y    P   H+YE+IRE +PC +YFDLEF R LNP  DG A ++  + A++  L+ +LG+ L    + +V+LDSST +KFSRH+IL +P G  F  N HVG  V QL A          L   AD+P +  G
Sbjct:   68 PGSTLCLPATSFYAKSKLDAVEERILRFLTRVHVRHKQPEAVEAEIWHVFPTQQAAIDCADGLNVQRGSPLERTRVWSMETSGDGKRRFLVSTVTNFYRRYSDMLPHHRHYYEIIREGQPCHIYFDLEFSRALNPDKDGPAAIQSLLEALSCLLQEELGMSLDI--ADVVELDSSTPSKFSRHLILRIP-GHAFASNAHVGALVRQLCARARERGPDGPLAIVADSPHLNGG 296          
BLAST of mRNA_P-wetherbeei_contig1932.3.3 vs. uniprot
Match: A0A6A3TPP9_9STRA (DNA-directed primase/polymerase protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TPP9_9STRA)

HSP 1 Score: 130 bits (327), Expect = 2.920e-27
Identity = 71/180 (39.44%), Postives = 100/180 (55.56%), Query Frame = 3
Query:  327 GETFPRQELAFARFDELLLQASEPVHFY---------KIMAYELAGGGRRGYAVVDMRRFAPHYLTSNPVDNHWYELIREHEPCCMYFDLEFGRRLNPGLDGDALVRLWIAAVAAKLRRDLGIELGTGASSIVDLDSSTDAKFSRHVILHMPDGRLFRDNVHVGRFVHQLVAELQTAADA 839
              +FPRQ  AF   D++        + Y         ++ ++E AG G+R + V     F  +Y  +     H YE+IRE  PC +YFDLEF R +NP +DGD LV   ++ +  +L R  G+    G  SI  LDSST AKFSRH+I H+PDG LF DN+H G FV + +++L   +DA
Sbjct:  255 SSSFPRQHEAFEFADQVAALRRRVKNTYVGRDDDRVPRVFSFENAGDGKRRFLVASFAEFWKNYTKTRADQRHVYEIIREGTPCRLYFDLEFKRAINPHVDGDTLVDRLVSLLQLQLYRRYGVHARHG--SIYQLDSSTPAKFSRHIIFHLPDGDLFVDNLHAGAFVREFISDLVAFSDA 432          
BLAST of mRNA_P-wetherbeei_contig1932.3.3 vs. uniprot
Match: A0A061RJ58_9CHLO (DNA-directed primase/polymerase protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RJ58_9CHLO)

HSP 1 Score: 119 bits (299), Expect = 9.210e-27
Identity = 70/170 (41.18%), Postives = 98/170 (57.65%), Query Frame = 3
Query:  330 ETFPRQELAFARFDELLL-----QASEPVHFYKIMAYELAGGGRRGYAVVDMRRFAPHYLTSNPVDNHWYELIREHEPCCMYFDLEFGRRLNPGLDGDALVRLWIAAVAAKLRRDLGI---ELGTGASSIVDLDSSTDAKFSRHVI--LHMPDGRL-FRDNVHVGRFVHQ 806
            E FPRQE+AF   D  +       ++  + F+ +   E    G+R + V     F   YL  +P   H YELIRE EPC +YFDLEF R+ NPG+DGD +V   +  +A    + +G     LG G  S+++LDS+T  KFSRH+I  LH PDG + F++N+HVG FV +
Sbjct:   50 EAFPRQEMAFRWADARVAADGFGSSASALRFFGV---ENGKHGQRSFVVATEASFWRRYLAMHPKSRHHYELIREGEPCHLYFDLEFSRQANPGIDGDRMVEHLLERIAKAAEQMIGXGDGXLGIGDESVMELDSTTSEKFSRHLIVRLHGPDGPVAFKNNLHVGEFVRK 216          
BLAST of mRNA_P-wetherbeei_contig1932.3.3 vs. uniprot
Match: A7RH99_NEMVE (DNA-directed primase/polymerase protein (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RH99_NEMVE)

HSP 1 Score: 116 bits (291), Expect = 2.450e-26
Identity = 67/154 (43.51%), Postives = 89/154 (57.79%), Query Frame = 3
Query:  330 ETFPRQELAFARFDELLLQASEPVHFYKIMAYELAGGGRRGYAVVDMRRFAPHYLTSNPVDNHWYELIREHEPCCMYFDLEFGRRLNPGLDGDALVRLWIAAVAAKLRRDLGIELGTGASSIVDLDSSTDAKFSRHVILHMPDGRLFRDNVHVG 791
            + FPRQ+LAF    + +   SE VH   + A EL   G+R Y V  +  F   Y +    D H+YE+I E   C +YFDLEF R  N  L+G  +V ++I  V + L+   GI+       I+DLDSSTD KFSRH+I HMP G +F+DNVH G
Sbjct:    9 KVFPRQQLAF----DFVKSCSEDVH---VFAEELGDDGKRQYIVSTLDEFWNTYRSIQAEDRHYYEVIEEGAACRLYFDLEFKREFNQDLNGPEMVEIFIEYVCSHLKESFGIDCRR--KHILDLDSSTDTKFSRHLIFHMP-GAVFKDNVHAG 152          
BLAST of mRNA_P-wetherbeei_contig1932.3.3 vs. uniprot
Match: G4YLM9_PHYSP (DNA-directed primase/polymerase protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YLM9_PHYSP)

HSP 1 Score: 127 bits (318), Expect = 3.580e-26
Identity = 72/179 (40.22%), Postives = 101/179 (56.42%), Query Frame = 3
Query:  327 GETFPRQELAFARFDELL-----LQASEPVHFY---------KIMAYELAGGGRRGYAVVDMRRFAPHYLTSNPVDNHWYELIREHEPCCMYFDLEFGRRLNPGLDGDALVRLWIAAVAAKLRRDLGIELGTGASSIVDLDSSTDAKFSRHVILHMPDGRLFRDNVHVGRFVHQLVAEL 821
              +FPRQ  AF   D++      ++AS  V  Y         ++ ++E AG G+R + V     F  +Y  +     H YE+IRE  PC +YFDLE  R +NP +DGD+LV   ++ +  +L R  GI    G  SI  LDSST AKFSRH+I H+PDG LF DN+H G FV + +++L
Sbjct:  255 SSSFPRQHEAFEFADQVAALRRRVKASRGVSGYVGPDDERVPRVFSFESAGDGKRRFLVASFAEFWKNYKKTRVDQRHVYEIIREGTPCRLYFDLELKRAINPHVDGDSLVTRLVSLLQLQLYRRYGIHTHLG--SIYQLDSSTPAKFSRHLIFHLPDGALFVDNLHAGAFVREFISDL 431          
BLAST of mRNA_P-wetherbeei_contig1932.3.3 vs. uniprot
Match: W2ME65_PHYPR (DNA-directed primase/polymerase protein n=9 Tax=Phytophthora parasitica TaxID=4792 RepID=W2ME65_PHYPR)

HSP 1 Score: 122 bits (306), Expect = 1.020e-24
Identity = 70/184 (38.04%), Postives = 100/184 (54.35%), Query Frame = 3
Query:  327 GETFPRQELAFARFDELLL--------QASEPVHFY------KIMAYELAGGGRRGYAVVDMRRFAPHYLTSNPVDNHWYELIREHEPCCMYFDLEFGRRLNPGLDGDALVRLWIAAVAAKLRRDLGIELGTGASSIVDLDSSTDAKFSRHVILHMPDGRLFRDNVHVGRFVHQLVAELQTAAD 836
              +FPRQ+ AF   D++           ++ P   Y      ++ ++E AG G+R + V  +  F  +Y  +     H YE+IRE  PC +YFDLEF R +N  +DGDALV   ++ +  +L R  G+ +      I  LDSST AKFSRH+I H PDG LFRDN+H G FV + + +L    D
Sbjct:  253 SSSFPRQQEAFEFADQVAALRRRVKATSSASPGIGYGGDSTPRVFSFESAGDGKRRFLVASLTEFWKNYKKTRDDQRHVYEIIREGVPCRLYFDLEFKREINLHVDGDALVARLVSLLQLQLFRRYGLRVHH--RDIYQLDSSTPAKFSRHLIFHFPDGNLFRDNLHAGAFVREFINDLVDLTD 434          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1932.3.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSB0_ECTSI5.860e-4730.77DNA-directed primase/polymerase protein n=1 Tax=Ec... [more]
A0A835YVT3_9STRA2.010e-2939.91DNA-directed primase/polymerase protein n=1 Tax=Tr... [more]
C3YHN8_BRAFL1.170e-2725.52DNA-directed primase/polymerase protein n=1 Tax=Br... [more]
UPI00139055101.190e-2744.51DNA-directed primase/polymerase protein n=1 Tax=Ne... [more]
A0A1D1ZUK7_AUXPR1.780e-2735.34DNA-directed primase/polymerase protein n=3 Tax=Au... [more]
A0A6A3TPP9_9STRA2.920e-2739.44DNA-directed primase/polymerase protein n=4 Tax=Ph... [more]
A0A061RJ58_9CHLO9.210e-2741.18DNA-directed primase/polymerase protein (Fragment)... [more]
A7RH99_NEMVE2.450e-2643.51DNA-directed primase/polymerase protein (Fragment)... [more]
G4YLM9_PHYSP3.580e-2640.22DNA-directed primase/polymerase protein n=1 Tax=Ph... [more]
W2ME65_PHYPR1.020e-2438.04DNA-directed primase/polymerase protein n=9 Tax=Ph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1932contigP-wetherbeei_contig1932:2220..6338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LSB0
Preferred namePRIMPOL
PFAMsHerpes_UL52
Model size3559
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000731,GO:0003674,GO:0003682,GO:0003824,GO:0003887,GO:0003896,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006264,GO:0006269,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0016043,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0030145,GO:0031297,GO:0031974,GO:0032042,GO:0032774,GO:0033554,GO:0034061,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045005,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0070013,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0097747,GO:0140097,GO:0140098,GO:1901360,GO:1901362,GO:1901576
Exons5
Evalue4.83e-49
EggNOG OGs28JNI@1|root,2QS1Q@2759|Eukaryota
DescriptionDNA primase activity
Cds size2196
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1932.3.3prot_P-wetherbeei_contig1932.3.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1932 3494..6249 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186169.5738537-UTR-P-wetherbeei_contig1932:2219..34931683186169.5738537-UTR-P-wetherbeei_contig1932:2219..3493Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1932 2220..3493 -
1683186169.642726-UTR-P-wetherbeei_contig1932:6249..63381683186169.642726-UTR-P-wetherbeei_contig1932:6249..6338Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1932 6250..6338 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186169.592714-CDS-P-wetherbeei_contig1932:3493..51361683186169.592714-CDS-P-wetherbeei_contig1932:3493..5136Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1932 3494..5136 -
1683186169.6063106-CDS-P-wetherbeei_contig1932:5328..55221683186169.6063106-CDS-P-wetherbeei_contig1932:5328..5522Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1932 5329..5522 -
1683186169.6150594-CDS-P-wetherbeei_contig1932:5692..57571683186169.6150594-CDS-P-wetherbeei_contig1932:5692..5757Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1932 5693..5757 -
1683186169.6240065-CDS-P-wetherbeei_contig1932:5856..59441683186169.6240065-CDS-P-wetherbeei_contig1932:5856..5944Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1932 5857..5944 -
1683186169.6329331-CDS-P-wetherbeei_contig1932:6043..62491683186169.6329331-CDS-P-wetherbeei_contig1932:6043..6249Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1932 6044..6249 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1932.3.3

>prot_P-wetherbeei_contig1932.3.3 ID=prot_P-wetherbeei_contig1932.3.3|Name=mRNA_P-wetherbeei_contig1932.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=732bp
MKARREYNYTTEEGWREEGGKQKRKRPLLLAKIKTLLRPVPPGAAYCHPA
AIGASTDGLPRVLSNLHERFARTRWQESRGETFPRQELAFARFDELLLQA
SEPVHFYKIMAYELAGGGRRGYAVVDMRRFAPHYLTSNPVDNHWYELIRE
HEPCCMYFDLEFGRRLNPGLDGDALVRLWIAAVAAKLRRDLGIELGTGAS
SIVDLDSSTDAKFSRHVILHMPDGRLFRDNVHVGRFVHQLVAELQTAADA
PAVGNGDDVCPANIGGDLSGIGAVSAAAADAAGAVVNEGVAVSAGLAVDA
AGVGDGCCSAATGPTDEGMGPPEGQTPLFTVTVAPSADDGDAPGEPCGLK
AIEAAFLTPRAMVDSLSPQTFLTPKALREASIDADGASSAMKGFEGVTAS
ETVQAALKQLWVRTDRGIAFFADTSVYSRNRCFRLLGSCKYGKTAVLKQA
LGCSDRRSGDAGNGGGRNTHDGSCGNGGGGGGNTRDGSRGIGGGGGGGGG
GSSCGIGVFLEAREKLLLDSLVVPVGAPPLPLGKLLTVVGPSCLTRLRLG
APPRDRRSGGGRSGSDNADADAATSSAAGAAASRGPGGSAIGRSTHSTAR
VGGHGASSPFPSLDAFVLSQARRGGVQGEIRAWHYRPGSGIVTYEMTKNR
FCRNNGRPHRSNNVLFEADLRAGALFQRCHDSQCRAAGFRSEAMPLPPLA
LPSPAVLAELDFEATLAEAMRRDNFDPGKWG*
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mRNA from alignment at P-wetherbeei_contig1932:2220..6338-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1932.3.3 ID=mRNA_P-wetherbeei_contig1932.3.3|Name=mRNA_P-wetherbeei_contig1932.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4119bp|location=Sequence derived from alignment at P-wetherbeei_contig1932:2220..6338- (Phaeothamnion wetherbeei SAG_119_79)
GGGAATAATGAAAAATATGATTCCGTAATGGGTAGTGAAAGGAAGTGTGA AGAGAAGGAAAAAAACAGGATACCAGTCGTCATCCATGCATGAAAGCGCG GCGCGAGTATAACTATACCACGGAGGAAGGATGGAGAGAGGAAGGAGGGA AACAAAAGAGGAAGAGGCCCCTCCTCCTGGCGAAGATAAAGACATTACTG CGGCCAGTCCCGCCTGGTGCTGCATATTGCCACCCGGCTGCAATCGGAGC GTCGACCGACGGACTACCACGCGTGCTGTCAAATCTGCACGAGAGGTGCT GCGGTGTGGACGCAACCTCTTTCCTCCACTTAGCTCTCTCTAACTCGAAG CGCCCTGACTCTGACTCCGCGTGGTGATACCTTTTATGGCGCAGGTTTGC TCGAACCAGATGGCAGGAGTCACGCGGCGAGACATTCCCGCGGCAAGAAC TCGCCTTCGCGCGTTTCGATGAACTCTTGCTGGTAAGTCAGTCTGTCGTT GCGCGCAGGGACGTTGCGAAGTTGTTCCACCTCTCAGTTGCCGTTACATC ACTCCATTTGGCACATTCTCTTCTGTTGCAGCAGGCTTCCGAGCCGGTGC ACTTCTACAAGATCATGGCATATGAACTCGCAGGAGGGGGCAGACGGTTC GTCCTATGACGCTCTGCATCCATGCGGCCGCCGTTGCACCGCCTGACCCA TTTCTTATGTACTTCCCTCAAATTCATGTTCGTGAAAGCACATTCGAGCG ACTCATCAAACCTTCAACCTCTCTTCTGCGCCACCACTCCTTTTGCTGAC AACGGAGCGCCCGCAGGGGGTACGCCGTGGTCGATATGCGCCGCTTCGCC CCGCACTACCTCACCAGCAACCCCGTAGACAACCACTGGTACGAGCTAAT CCGGGAGCACGAACCGTGTTGTATGTACTTCGACCTTGAGTTCGGCCGAC GCCTCAACCCGGGTCTGGATGGCGACGCGCTGGTGCGACTTTGGATCGCC GCTGTCGCAGGTCGGTGGAGTCTGACAACATGCCTGATCTGGCCGTAATC AGACATGTATTTGGACCGAAAGCACCAGTTGTTATTCTGTCAGCCTTCTA GCCCCAATCTGTTTAGTCGAGGAAAGAATGCGTTTGAACACTTCTCCCGC TTTCTTTCATCATGTTTTTCTTCTGCCTCCCCCAAACATACGCATCATCC AGCCAAGCTGAGGCGAGATTTGGGCATCGAGCTCGGAACGGGCGCCTCCT CCATCGTCGACCTCGACTCCTCCACCGACGCCAAGTTCAGCCGCCACGTG ATCCTCCACATGCCGGACGGCCGCCTCTTCCGCGACAACGTCCACGTCGG CCGTTTCGTTCACCAGCTCGTGGCGGAATTGCAGACTGCGGCTGATGCTC CCGCAGTCGGCAACGGCGACGACGTCTGCCCTGCCAACATTGGCGGCGAT CTTTCCGGCATCGGCGCCGTAAGCGCCGCAGCCGCCGACGCCGCAGGTGC AGTGGTCAATGAAGGCGTGGCCGTCTCAGCAGGTCTGGCGGTTGATGCTG CCGGCGTCGGCGATGGATGCTGCAGCGCTGCCACCGGACCGACAGATGAA GGTATGGGGCCGCCGGAGGGGCAGACGCCTCTTTTTACGGTTACGGTGGC ACCGTCTGCAGACGACGGCGATGCGCCTGGAGAACCATGCGGGTTGAAAG CAATAGAGGCAGCCTTCTTGACGCCGCGGGCGATGGTGGACAGCCTGTCC CCGCAGACCTTCCTGACGCCGAAAGCCTTACGGGAGGCTTCCATCGATGC GGACGGAGCCTCGAGTGCCATGAAAGGCTTTGAAGGCGTCACGGCTTCTG AGACGGTGCAGGCTGCTTTGAAGCAGCTGTGGGTACGCACCGACCGCGGC ATCGCCTTCTTCGCAGACACGAGCGTCTACAGCCGCAACCGCTGCTTTCG GTTGCTCGGAAGCTGCAAGTACGGTAAGACGGCGGTCTTGAAGCAGGCAC TTGGTTGCAGCGACCGGCGGAGTGGGGATGCTGGCAACGGCGGTGGCAGG AACACACATGATGGCAGCTGCGGCAACGGTGGTGGCGGCGGCGGCAATAC ACGTGATGGCAGCCGCGGCATCGGCGGCGGCGGCGGCGGCGGCGGCGGCG GCAGCAGCTGCGGGATCGGTGTTTTTCTAGAGGCCCGCGAAAAGCTTCTT CTCGACTCGCTCGTGGTTCCAGTTGGCGCACCGCCGCTGCCTCTAGGAAA GCTGCTGACGGTGGTCGGCCCCTCATGCTTGACCCGTTTGCGGCTCGGAG CTCCGCCGAGGGATCGCCGAAGCGGCGGCGGCCGCAGCGGCAGCGACAAC GCCGACGCAGACGCCGCAACAAGCTCCGCCGCCGGTGCCGCCGCCAGTCG CGGCCCAGGCGGCAGTGCCATTGGGCGCTCTACGCACAGCACTGCCCGCG TCGGCGGCCACGGGGCGTCATCGCCGTTCCCGTCGCTCGACGCCTTCGTG CTCTCCCAAGCGCGTCGCGGCGGCGTCCAGGGCGAGATCCGGGCATGGCA CTACCGCCCTGGGAGCGGCATCGTCACGTACGAGATGACGAAGAACCGCT TCTGTCGCAACAACGGACGCCCCCATCGGAGCAACAACGTGCTATTCGAA GCGGATCTGCGGGCCGGTGCTCTCTTCCAGCGCTGCCACGACTCGCAGTG CCGGGCGGCCGGCTTCCGCTCCGAGGCGATGCCGCTGCCGCCACTGGCAC TGCCGTCGCCGGCGGTGCTGGCGGAGCTAGATTTTGAGGCCACCTTGGCG GAGGCGATGCGCCGGGACAACTTCGATCCTGGGAAGTGGGGGTGATGGCT GCGTGCCATGCGGTGGCGCCGCTTTTGATTATAGAGAGAGGATCTCCAGA GCGCATGCGAGCACTTAGTTTTTGTGATGAAAAGACATGTTATTTTGCTT ATCCTGCCAGAAAGCAGGATGCCTTCGTTCTACTTGCACGGCGGGCCCCT GCCGTTCAGATTCCAGTCGTAGTAAAAAAAGTCAACCTTCAGTCGCCCCT TGTTTTGCCCCACGTACTCGCTGTCCGCGCTCGGCATGTATGGCAGCAGG AAGTCAACCACCGTCCCGCCGCCGCCTCCAGCCTGCACGAAATCCGACTC GAACCAGCTGAAAATCTGCCAGCAGCCAAGCGGCAAGATGGGTGGCAGAG ACAAAGGATTTAAGAGCTGCCGGGTGCAAATATGTGGCATTGCAAGGCAA AGCGCTCTTGAGGAGAACAAAGGAAAGAGGCCGCTCCACAATTGCAGGCT CGCAAAACCGATATTAACCTTTACACTGCACTGTGGTGCTGGCAATAACG TGTACACTACACTGCGGTGCTGGCCACGGAAGAGCAGGCTGCCCCCCCCG CCAGCAACCAAAACCAAGGATAAACAGCGCCTGAACCGACAGACAGCCCG AGCGGAAGGATGAGCGGCACACCTTGGACAGCCTCAGGACGCCAGCCCCG CGGTCGAGCGCCATGCCCTTGGCTGGGTTGGCCAGGAACGCCCGCATGTT GTCGGCCATCTGCTGCTCGAGCGTCGTCGGCAGGTAGGCGCTCGCCGCGA GGTCAGGGCAGCTGACGCTGGCGCAGACGATGCAGGCGTGCAGGAGCGGG TCCCGTTCGAGGCCCTGCAAAGGAATGCCGGCGAATAGCCGTTCGCCGCG GCGGTGACGGCGGCGGCAGCAGCCGCACCGGCAACACCGCAGGTATGGTA AAAAGATAAGACTTATGGCGGCAAGAACATAATTTCTACGGCTGAAATCA ACATAGAAGCGTATGATTGGCCAGGCTACAGGTTGGAGGATCGCCGGGGA GGCTGCACTGACTGATCTTGGTCAATGGGTGTGTGGTATGGCAAGAATAG TCCACAGGAGTAGTTGGTAACAGTTCGGCTGTCTAGCTGTCGTCATAGAT CATGTGCAAGCGTCTCCGAGAATTGACAAAAACATACGAAAAAGGGAAAC AAAAGACCGAAAGGCAAGCTTCTTCAGCGCACCTCTGGCTTGCGAAGTCT TTCGTGCTCGATGTCGTCGAGCGAAACCGATGCGCCGCCAAGGATGCCCG CCGTCCGCTTCCATACTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1932:2220..6338-

>mRNA_P-wetherbeei_contig1932.3.3 ID=mRNA_P-wetherbeei_contig1932.3.3|Name=mRNA_P-wetherbeei_contig1932.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2196bp|location=Sequence derived from alignment at P-wetherbeei_contig1932:2220..6338- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAGCGCGGCGCGAGTATAACTATACCACGGAGGAAGGATGGAGAGA
GGAAGGAGGGAAACAAAAGAGGAAGAGGCCCCTCCTCCTGGCGAAGATAA
AGACATTACTGCGGCCAGTCCCGCCTGGTGCTGCATATTGCCACCCGGCT
GCAATCGGAGCGTCGACCGACGGACTACCACGCGTGCTGTCAAATCTGCA
CGAGAGGTTTGCTCGAACCAGATGGCAGGAGTCACGCGGCGAGACATTCC
CGCGGCAAGAACTCGCCTTCGCGCGTTTCGATGAACTCTTGCTGCAGGCT
TCCGAGCCGGTGCACTTCTACAAGATCATGGCATATGAACTCGCAGGAGG
GGGCAGACGGGGGTACGCCGTGGTCGATATGCGCCGCTTCGCCCCGCACT
ACCTCACCAGCAACCCCGTAGACAACCACTGGTACGAGCTAATCCGGGAG
CACGAACCGTGTTGTATGTACTTCGACCTTGAGTTCGGCCGACGCCTCAA
CCCGGGTCTGGATGGCGACGCGCTGGTGCGACTTTGGATCGCCGCTGTCG
CAGCCAAGCTGAGGCGAGATTTGGGCATCGAGCTCGGAACGGGCGCCTCC
TCCATCGTCGACCTCGACTCCTCCACCGACGCCAAGTTCAGCCGCCACGT
GATCCTCCACATGCCGGACGGCCGCCTCTTCCGCGACAACGTCCACGTCG
GCCGTTTCGTTCACCAGCTCGTGGCGGAATTGCAGACTGCGGCTGATGCT
CCCGCAGTCGGCAACGGCGACGACGTCTGCCCTGCCAACATTGGCGGCGA
TCTTTCCGGCATCGGCGCCGTAAGCGCCGCAGCCGCCGACGCCGCAGGTG
CAGTGGTCAATGAAGGCGTGGCCGTCTCAGCAGGTCTGGCGGTTGATGCT
GCCGGCGTCGGCGATGGATGCTGCAGCGCTGCCACCGGACCGACAGATGA
AGGTATGGGGCCGCCGGAGGGGCAGACGCCTCTTTTTACGGTTACGGTGG
CACCGTCTGCAGACGACGGCGATGCGCCTGGAGAACCATGCGGGTTGAAA
GCAATAGAGGCAGCCTTCTTGACGCCGCGGGCGATGGTGGACAGCCTGTC
CCCGCAGACCTTCCTGACGCCGAAAGCCTTACGGGAGGCTTCCATCGATG
CGGACGGAGCCTCGAGTGCCATGAAAGGCTTTGAAGGCGTCACGGCTTCT
GAGACGGTGCAGGCTGCTTTGAAGCAGCTGTGGGTACGCACCGACCGCGG
CATCGCCTTCTTCGCAGACACGAGCGTCTACAGCCGCAACCGCTGCTTTC
GGTTGCTCGGAAGCTGCAAGTACGGTAAGACGGCGGTCTTGAAGCAGGCA
CTTGGTTGCAGCGACCGGCGGAGTGGGGATGCTGGCAACGGCGGTGGCAG
GAACACACATGATGGCAGCTGCGGCAACGGTGGTGGCGGCGGCGGCAATA
CACGTGATGGCAGCCGCGGCATCGGCGGCGGCGGCGGCGGCGGCGGCGGC
GGCAGCAGCTGCGGGATCGGTGTTTTTCTAGAGGCCCGCGAAAAGCTTCT
TCTCGACTCGCTCGTGGTTCCAGTTGGCGCACCGCCGCTGCCTCTAGGAA
AGCTGCTGACGGTGGTCGGCCCCTCATGCTTGACCCGTTTGCGGCTCGGA
GCTCCGCCGAGGGATCGCCGAAGCGGCGGCGGCCGCAGCGGCAGCGACAA
CGCCGACGCAGACGCCGCAACAAGCTCCGCCGCCGGTGCCGCCGCCAGTC
GCGGCCCAGGCGGCAGTGCCATTGGGCGCTCTACGCACAGCACTGCCCGC
GTCGGCGGCCACGGGGCGTCATCGCCGTTCCCGTCGCTCGACGCCTTCGT
GCTCTCCCAAGCGCGTCGCGGCGGCGTCCAGGGCGAGATCCGGGCATGGC
ACTACCGCCCTGGGAGCGGCATCGTCACGTACGAGATGACGAAGAACCGC
TTCTGTCGCAACAACGGACGCCCCCATCGGAGCAACAACGTGCTATTCGA
AGCGGATCTGCGGGCCGGTGCTCTCTTCCAGCGCTGCCACGACTCGCAGT
GCCGGGCGGCCGGCTTCCGCTCCGAGGCGATGCCGCTGCCGCCACTGGCA
CTGCCGTCGCCGGCGGTGCTGGCGGAGCTAGATTTTGAGGCCACCTTGGC
GGAGGCGATGCGCCGGGACAACTTCGATCCTGGGAAGTGGGGGTGA
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