mRNA_P-wetherbeei_contig19313.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19313.2.1
Unique NamemRNA_P-wetherbeei_contig19313.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19313.2.1 vs. uniprot
Match: UPI0019927F33 (Transcriptional repressor n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI0019927F33)

HSP 1 Score: 250 bits (638), Expect = 2.060e-83
Identity = 125/136 (91.91%), Postives = 129/136 (94.85%), Query Frame = 1
Query:   31 KYTRDNLAEVLRGRGINPTHQRIEIAHAIFSRGEHFSADQILALVNDRASETSKATVYNTLNLFLEKKLVREVIVDPSKVFYDPNTDPHHHFYNVDTGELTDIDARDIRVTGLPALPQGMATEGVDIIVRVRSSAA 438
            K+TRDNLAEVLR RGINPTHQRIEIA+AIFSR EH SADQILALVNDRASETSKATVYNTLNLFLEKKL+REVIVDPSKVFYDPNTDPHHHFYN DTGELTDIDARDIRVTGLP LP GMATEGVDIIVR+RS AA
Sbjct:    2 KFTRDNLAEVLRNRGINPTHQRIEIAYAIFSRCEHSSADQILALVNDRASETSKATVYNTLNLFLEKKLIREVIVDPSKVFYDPNTDPHHHFYNTDTGELTDIDARDIRVTGLPPLPHGMATEGVDIIVRIRSKAA 137          
BLAST of mRNA_P-wetherbeei_contig19313.2.1 vs. uniprot
Match: A0A7C2YMG8_9PROT (Ferric uptake regulation protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2YMG8_9PROT)

HSP 1 Score: 232 bits (591), Expect = 3.330e-76
Identity = 113/140 (80.71%), Postives = 126/140 (90.00%), Query Frame = 1
Query:   19 MFENKYTRDNLAEVLRGRGINPTHQRIEIAHAIFSRGEHFSADQILALVNDRASETSKATVYNTLNLFLEKKLVREVIVDPSKVFYDPNTDPHHHFYNVDTGELTDIDARDIRVTGLPALPQGMATEGVDIIVRVRSSAA 438
            M    YTRDNLA+VLR  GINPTHQRIEIA+A+FSRGEH SADQ+LA+VNDR SETSKATVYNTLNLFLE+KL+REVIVDP+KVFYDPNT PHHHFYNVDTGELTDIDA  I ++GLP LP+GM TEGVDIIVRVRS++A
Sbjct:    1 MRATHYTRDNLADVLRAHGINPTHQRIEIAYALFSRGEHLSADQVLAIVNDRHSETSKATVYNTLNLFLERKLIREVIVDPNKVFYDPNTAPHHHFYNVDTGELTDIDAGPITISGLPELPEGMITEGVDIIVRVRSASA 140          
BLAST of mRNA_P-wetherbeei_contig19313.2.1 vs. uniprot
Match: A0A1F4DA28_9PROT (Ferric uptake regulation protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DA28_9PROT)

HSP 1 Score: 226 bits (576), Expect = 1.020e-73
Identity = 109/139 (78.42%), Postives = 124/139 (89.21%), Query Frame = 1
Query:   19 MFENKYTRDNLAEVLRGRGINPTHQRIEIAHAIFSRGEHFSADQILALVNDRASETSKATVYNTLNLFLEKKLVREVIVDPSKVFYDPNTDPHHHFYNVDTGELTDIDARDIRVTGLPALPQGMATEGVDIIVRVRSSA 435
            M E  YTRDNL  +LRG  INPTHQRIEIA+A+FSRGEH SADQ+LA+VNDR SETSKATVYNTLNLFLEKKL+REVIVDP+KVFYDPNT PHHHFYN+D+GELTDIDA  I ++GLP LP+GM TEGVDIIVR+R+S+
Sbjct:    1 MREPHYTRDNLVAMLRGHDINPTHQRIEIAYALFSRGEHLSADQLLAIVNDRHSETSKATVYNTLNLFLEKKLIREVIVDPNKVFYDPNTTPHHHFYNIDSGELTDIDAGRITISGLPQLPKGMVTEGVDIIVRIRASS 139          
BLAST of mRNA_P-wetherbeei_contig19313.2.1 vs. uniprot
Match: A0A1F4BCZ6_9PROT (Ferric uptake regulation protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_26 TaxID=1797492 RepID=A0A1F4BCZ6_9PROT)

HSP 1 Score: 218 bits (556), Expect = 6.070e-71
Identity = 107/132 (81.06%), Postives = 115/132 (87.12%), Query Frame = 1
Query:   34 YTRDNLAEVLRGRGINPTHQRIEIAHAIFSRGEHFSADQILALVNDRASETSKATVYNTLNLFLEKKLVREVIVDPSKVFYDPNTDPHHHFYNVDTGELTDIDARDIRVTGLPALPQGMATEGVDIIVRVRS 429
            YTRD L E LR   INPTHQRIEIA A++SRGEH SADQ+LA+VNDR SETSKATVYNTLNLFLEKKL+REVIVDP+KVFYDPNT+PHHHFYNVDTGEL DIDA  + V GLP LP GM TEGVDIIVRVRS
Sbjct:    3 YTRDQLVEQLRRHDINPTHQRIEIAFALYSRGEHLSADQVLAIVNDRHSETSKATVYNTLNLFLEKKLIREVIVDPNKVFYDPNTEPHHHFYNVDTGELADIDAAGVEVHGLPPLPDGMVTEGVDIIVRVRS 134          
BLAST of mRNA_P-wetherbeei_contig19313.2.1 vs. uniprot
Match: A0A512L4K9_9PROT (Ferric uptake regulation protein n=2 Tax=Sulfuriferula plumbiphila TaxID=171865 RepID=A0A512L4K9_9PROT)

HSP 1 Score: 216 bits (550), Expect = 1.170e-69
Identity = 104/146 (71.23%), Postives = 124/146 (84.93%), Query Frame = 1
Query:    1 GLESKIMFENKYTRDNLAEVLRGRGINPTHQRIEIAHAIFSRGEHFSADQILALVNDRASETSKATVYNTLNLFLEKKLVREVIVDPSKVFYDPNTDPHHHFYNVDTGELTDIDARDIRVTGLPALPQGMATEGVDIIVRVRSSAA 438
            G ++  M   +Y+RDN+A++LR  GINPTHQRIEIA+A+FSR +H SADQI+A+VNDR SETSKATVYNTLNLFLEKKL+REVIVDP+KVFYDPNT  HHHFY+V +GELTDIDA  I + GLP LP+G+ TEGVDIIVR+R  AA
Sbjct:   13 GTQAMDMMVQQYSRDNMADLLRSHGINPTHQRIEIAYALFSRQQHLSADQIMAIVNDRHSETSKATVYNTLNLFLEKKLIREVIVDPNKVFYDPNTQLHHHFYDVSSGELTDIDADGITICGLPQLPEGVVTEGVDIIVRIRPGAA 158          
BLAST of mRNA_P-wetherbeei_contig19313.2.1 vs. uniprot
Match: A0A6H9XXG1_9PROT (Ferric uptake regulation protein n=1 Tax=Betaproteobacteria bacterium SCN2 TaxID=2651628 RepID=A0A6H9XXG1_9PROT)

HSP 1 Score: 211 bits (537), Expect = 5.080e-68
Identity = 99/135 (73.33%), Postives = 119/135 (88.15%), Query Frame = 1
Query:   31 KYTRDNLAEVLRGRGINPTHQRIEIAHAIFSRGEHFSADQILALVNDRASETSKATVYNTLNLFLEKKLVREVIVDPSKVFYDPNTDPHHHFYNVDTGELTDIDARDIRVTGLPALPQGMATEGVDIIVRVRSSA 435
            +Y+RDN+AE+LR   INPTHQRIEIA+A+FSR EH SADQ++ +VNDR +ETSKATVYNTLNLFLEK L+REVIVDPSKVFYDPNT PHHH Y VD+G+LTDIDA D+R+ GLPALP+GM T G+D+IVRV+ +A
Sbjct:    3 QYSRDNMAELLRAHDINPTHQRIEIAYALFSRQEHLSADQVMTIVNDRHAETSKATVYNTLNLFLEKGLIREVIVDPSKVFYDPNTGPHHHLYEVDSGQLTDIDADDVRIEGLPALPKGMETVGIDLIVRVKRTA 137          
BLAST of mRNA_P-wetherbeei_contig19313.2.1 vs. uniprot
Match: A0A401JHQ1_9PROT (Ferric uptake regulation protein n=2 Tax=Sulfuriferula multivorans TaxID=1559896 RepID=A0A401JHQ1_9PROT)

HSP 1 Score: 211 bits (538), Expect = 5.490e-68
Identity = 102/139 (73.38%), Postives = 119/139 (85.61%), Query Frame = 1
Query:   19 MFENKYTRDNLAEVLRGRGINPTHQRIEIAHAIFSRGEHFSADQILALVNDRASETSKATVYNTLNLFLEKKLVREVIVDPSKVFYDPNTDPHHHFYNVDTGELTDIDARDIRVTGLPALPQGMATEGVDIIVRVRSSA 435
            M   +Y+RDN+AE+LR   INPTHQRIEIA+A+FSR +H SADQI+A+VNDR SETSKATVYNTLNLFLEKKL+REVIVDP+KVFYDPNT  HHHFYNV +GELTDIDA  + + GLP LP+G+ TEGVDIIVR+R  A
Sbjct:    3 MKMQQYSRDNMAELLRSHDINPTHQRIEIAYALFSRQQHLSADQIMAIVNDRHSETSKATVYNTLNLFLEKKLIREVIVDPNKVFYDPNTQLHHHFYNVTSGELTDIDAEGVTICGLPQLPEGVITEGVDIIVRIRPGA 141          
BLAST of mRNA_P-wetherbeei_contig19313.2.1 vs. uniprot
Match: A0A0S8BTC9_9PROT (Ferric uptake regulation protein n=1 Tax=Betaproteobacteria bacterium SG8_41 TaxID=1703391 RepID=A0A0S8BTC9_9PROT)

HSP 1 Score: 211 bits (536), Expect = 8.230e-68
Identity = 105/139 (75.54%), Postives = 116/139 (83.45%), Query Frame = 1
Query:   19 MFENKYTRDNLAEVLRGRGINPTHQRIEIAHAIFSRGEHFSADQILALVNDRASETSKATVYNTLNLFLEKKLVREVIVDPSKVFYDPNTDPHHHFYNVDTGELTDIDARDIRVTGLPALPQGMATEGVDIIVRVRSSA 435
            M  +  TR+NL E+LR   INPTHQRIEIAHA+FSRGEH SADQILA+VNDR  ETSKATVYNTLNLFL K L+REVIVDP+KVFYDPNT PHHH YNVDTGELTDIDA  + V+GLP LP+G   EGV+IIVRVRS A
Sbjct:    1 MRAHPVTRENLTELLRAHEINPTHQRIEIAHALFSRGEHVSADQILAIVNDRHLETSKATVYNTLNLFLHKGLIREVIVDPNKVFYDPNTQPHHHLYNVDTGELTDIDAGAMSVSGLPRLPEGTVAEGVEIIVRVRSGA 139          
BLAST of mRNA_P-wetherbeei_contig19313.2.1 vs. uniprot
Match: A0A658BQK3_9PROT (Ferric uptake regulation protein n=1 Tax=Nitrosomonadales bacterium TaxID=2026761 RepID=A0A658BQK3_9PROT)

HSP 1 Score: 208 bits (530), Expect = 6.320e-67
Identity = 101/138 (73.19%), Postives = 114/138 (82.61%), Query Frame = 1
Query:   19 MFENKYTRDNLAEVLRGRGINPTHQRIEIAHAIFSRGEHFSADQILALVNDRASETSKATVYNTLNLFLEKKLVREVIVDPSKVFYDPNTDPHHHFYNVDTGELTDIDARDIRVTGLPALPQGMATEGVDIIVRVRSS 432
            M   +YTRDN+ ++LR  GINPTHQRIEIAHA+FS   H  ADQ++A+ N + SETSKATVYNTLNLFLEKK++REVIVDPSKVFYDPNT PHHHFYN  TGELTDID  DI +TGLP LP G+ TEGVDIIVRVR S
Sbjct:    1 MRTTEYTRDNMVDLLRQHGINPTHQRIEIAHALFSHYGHLCADQVMAITNAKHSETSKATVYNTLNLFLEKKMIREVIVDPSKVFYDPNTYPHHHFYNTATGELTDIDVEDIGLTGLPQLPPGLVTEGVDIIVRVRPS 138          
BLAST of mRNA_P-wetherbeei_contig19313.2.1 vs. uniprot
Match: A0A6F8VAJ1_9PROT (Ferric uptake regulation protein n=2 Tax=Sulfurimicrobium lacus TaxID=2715678 RepID=A0A6F8VAJ1_9PROT)

HSP 1 Score: 206 bits (523), Expect = 7.360e-66
Identity = 101/134 (75.37%), Postives = 114/134 (85.07%), Query Frame = 1
Query:   34 YTRDNLAEVLRGRGINPTHQRIEIAHAIFSRGEHFSADQILALVNDRASETSKATVYNTLNLFLEKKLVREVIVDPSKVFYDPNTDPHHHFYNVDTGELTDIDARDIRVTGLPALPQGMATEGVDIIVRVRSSA 435
            YTRDN+A++LR  GINPTHQRIEIA A+FS  EH  ADQ++A+VN + SETSKATVYNTLNLF EKK++REVIVDPSKVFYDPNT  HHHFYNV TGELTDID  DI +TGLP LP G+ TEGVDIIVRVR +A
Sbjct:    6 YTRDNMADLLRQHGINPTHQRIEIAFALFSHQEHLCADQVMAIVNAKHSETSKATVYNTLNLFQEKKMIREVIVDPSKVFYDPNTHLHHHFYNVATGELTDIDVDDIGLTGLPQLPPGLVTEGVDIIVRVRPTA 139          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19313.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019927F332.060e-8391.91Transcriptional repressor n=1 Tax=Burkholderiales ... [more]
A0A7C2YMG8_9PROT3.330e-7680.71Ferric uptake regulation protein n=1 Tax=Betaprote... [more]
A0A1F4DA28_9PROT1.020e-7378.42Ferric uptake regulation protein n=1 Tax=Betaprote... [more]
A0A1F4BCZ6_9PROT6.070e-7181.06Ferric uptake regulation protein n=1 Tax=Betaprote... [more]
A0A512L4K9_9PROT1.170e-6971.23Ferric uptake regulation protein n=2 Tax=Sulfurife... [more]
A0A6H9XXG1_9PROT5.080e-6873.33Ferric uptake regulation protein n=1 Tax=Betaprote... [more]
A0A401JHQ1_9PROT5.490e-6873.38Ferric uptake regulation protein n=2 Tax=Sulfurife... [more]
A0A0S8BTC9_9PROT8.230e-6875.54Ferric uptake regulation protein n=1 Tax=Betaprote... [more]
A0A658BQK3_9PROT6.320e-6773.19Ferric uptake regulation protein n=1 Tax=Nitrosomo... [more]
A0A6F8VAJ1_9PROT7.360e-6675.37Ferric uptake regulation protein n=2 Tax=Sulfurimi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19313contigP-wetherbeei_contig19313:381..839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1123393.KB891329_gene970
PFAMsFUR
Model size459
Max annot lvl119069|Hydrogenophilales
KEGG koko:K09826
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.01e-67
EggNOG OGsCOG0735@1|root,COG0735@2|Bacteria,1RH58@1224|Proteobacteria,2VT6I@28216|Betaproteobacteria,1KSD1@119069|Hydrogenophilales
DescriptionFerric uptake regulator family
Cds size441
COG categoryK
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186169.3742466-CDS-P-wetherbeei_contig19313:380..8211683186169.3742466-CDS-P-wetherbeei_contig19313:380..821Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19313 381..821 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186169.388228-UTR-P-wetherbeei_contig19313:821..8391683186169.388228-UTR-P-wetherbeei_contig19313:821..839Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19313 822..839 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19313.2.1prot_P-wetherbeei_contig19313.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19313 381..821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19313.2.1

>prot_P-wetherbeei_contig19313.2.1 ID=prot_P-wetherbeei_contig19313.2.1|Name=mRNA_P-wetherbeei_contig19313.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=147bp
MFENKYTRDNLAEVLRGRGINPTHQRIEIAHAIFSRGEHFSADQILALVN
DRASETSKATVYNTLNLFLEKKLVREVIVDPSKVFYDPNTDPHHHFYNVD
TGELTDIDARDIRVTGLPALPQGMATEGVDIIVRVRSSAADADSLK*
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mRNA from alignment at P-wetherbeei_contig19313:381..839-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19313.2.1 ID=mRNA_P-wetherbeei_contig19313.2.1|Name=mRNA_P-wetherbeei_contig19313.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig19313:381..839- (Phaeothamnion wetherbeei SAG_119_79)
GGTTTAGAATCAAAAATCATGTTTGAAAACAAATACACGCGAGACAACCT GGCGGAAGTGCTGCGTGGCCGCGGCATCAATCCGACTCACCAGCGCATAG AGATAGCCCATGCGATTTTTTCGCGTGGGGAGCATTTTTCGGCGGATCAG ATACTTGCGCTTGTCAACGACCGTGCCTCGGAAACGTCCAAAGCGACCGT CTACAACACGCTCAATCTGTTTCTCGAGAAAAAACTGGTGCGGGAGGTCA TCGTTGATCCGAGCAAGGTTTTTTACGATCCGAATACCGATCCGCATCAT CATTTCTACAATGTTGATACCGGCGAGCTGACCGATATCGACGCGCGGGA TATCCGCGTGACGGGGTTGCCGGCGTTGCCGCAGGGCATGGCGACCGAGG GCGTCGATATCATCGTGCGCGTGCGGTCCAGCGCGGCTGACGCTGACAGT CTGAAGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19313:381..839-

>mRNA_P-wetherbeei_contig19313.2.1 ID=mRNA_P-wetherbeei_contig19313.2.1|Name=mRNA_P-wetherbeei_contig19313.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig19313:381..839- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTGAAAACAAATACACGCGAGACAACCTGGCGGAAGTGCTGCGTGG
CCGCGGCATCAATCCGACTCACCAGCGCATAGAGATAGCCCATGCGATTT
TTTCGCGTGGGGAGCATTTTTCGGCGGATCAGATACTTGCGCTTGTCAAC
GACCGTGCCTCGGAAACGTCCAAAGCGACCGTCTACAACACGCTCAATCT
GTTTCTCGAGAAAAAACTGGTGCGGGAGGTCATCGTTGATCCGAGCAAGG
TTTTTTACGATCCGAATACCGATCCGCATCATCATTTCTACAATGTTGAT
ACCGGCGAGCTGACCGATATCGACGCGCGGGATATCCGCGTGACGGGGTT
GCCGGCGTTGCCGCAGGGCATGGCGACCGAGGGCGTCGATATCATCGTGC
GCGTGCGGTCCAGCGCGGCTGACGCTGACAGTCTGAAGTAA
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