mRNA_P-wetherbeei_contig1931.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1931.1.1
Unique NamemRNA_P-wetherbeei_contig1931.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1931.1.1 vs. uniprot
Match: D7G7X7_ECTSI (ATP binding / amino acid binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X7_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.710e-23
Identity = 58/132 (43.94%), Postives = 76/132 (57.58%), Query Frame = 1
Query:    1 LDDEVWLVQELAPLGSLRERLGRSPSALSDEAKRRILAQIAGGMAYLHGQDVQHRNLKASNILLASDMTAKISDFGLPR-------TVAALTGTETGRPWQESAPWAAPEVLDRQGHVRESDVYGFGVVVWE 375
            L D + LV EL P G L   L RS + L +E  R+I+  I  GMA+LHG++  H +LK++N+LL     AKI DFG  R       T  A   T+  +  Q S  W+APEVL+  G   +SDVY FG+VVWE
Sbjct:  876 LSDRMVLVMELLPNGDLLTLLRRSTNPLPEEKSRQIIGDICAGMAFLHGKNTVHGDLKSANVLLDGGGRAKIGDFGTSRWSQHTNSTGLATYTTKANQSTQMSLAWSAPEVLESGGSTYKSDVYSFGIVVWE 1007          
BLAST of mRNA_P-wetherbeei_contig1931.1.1 vs. uniprot
Match: D7G7F2_ECTSI (Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs/ leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F2_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.710e-23
Identity = 59/132 (44.70%), Postives = 77/132 (58.33%), Query Frame = 1
Query:    1 LDDEVWLVQELAPLGSLRERLGRSPSALSDEAKRRILAQIAGGMAYLHGQDVQHRNLKASNILLASDMTAKISDFGLPR-------TVAALTGTETGRPWQESAPWAAPEVLDRQGHVRESDVYGFGVVVWE 375
            L D + LV EL   G L   L +S  AL  +  RRI+  I  GMA+LHG++  H +LK++N+LL  D  AKI+DFG  R       T  A   T + +  Q S  W+APEVL+ +G   ESDVY FG+VVWE
Sbjct:  960 LPDRMVLVMELLAGGDLLTLLRKSKKALPGQQSRRIIRDICTGMAFLHGKNTVHGDLKSANVLLDGDGRAKIADFGTSRWTQTTNSTGLATYTTRSSQTTQMSIAWSAPEVLESEGSSYESDVYSFGIVVWE 1091          
BLAST of mRNA_P-wetherbeei_contig1931.1.1 vs. uniprot
Match: B8CC40_THAPS (Protein kinase domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CC40_THAPS)

HSP 1 Score: 100 bits (250), Expect = 2.160e-23
Identity = 56/123 (45.53%), Postives = 74/123 (60.16%), Query Frame = 1
Query:   13 VWLVQELAPLGSLRERLGRSPSALSDEAKRRILAQIAGGMAYLHGQD--VQHRNLKASNILLASDMTAKISDFGLPRTVAALTGTETGRPWQESAPWAAPEVLDRQGHVRESDVYGFGVVVWE 375
            +W+V EL  LGSLR+ L      LS + +  +  Q+A GMAYLH QD  + HR+LK+ NI +   M+AKI D+G  R  A L G+ T      +A W APEVL      + SDVYGFG+V+WE
Sbjct:   85 IWIVSELCSLGSLRQLLDDRERKLSMDVRLNLALQVAEGMAYLHTQDPPIIHRDLKSHNIFVHETMSAKIGDWGSAR--ATLAGSRTMTHGVGTACWMAPEVLKHARSSKYSDVYGFGIVLWE 205          
BLAST of mRNA_P-wetherbeei_contig1931.1.1 vs. uniprot
Match: A0A6H5KF25_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF25_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 2.330e-23
Identity = 58/132 (43.94%), Postives = 75/132 (56.82%), Query Frame = 1
Query:    1 LDDEVWLVQELAPLGSLRERLGRSPSALSDEAKRRILAQIAGGMAYLHGQDVQHRNLKASNILLASDMTAKISDFGLPR-------TVAALTGTETGRPWQESAPWAAPEVLDRQGHVRESDVYGFGVVVWE 375
            L D + LV EL P G L   L RS   L +E  R+I+  I  GMA+LHG++  H +LK++N+LL     AKI DFG  R       T  A   T+  +  Q S  W+APEVL+  G   +SDVY FG+VVWE
Sbjct:  901 LSDRMVLVMELLPNGDLLTLLRRSTKPLPEEKSRQIIGDICAGMAFLHGKNTVHGDLKSANVLLDGGGRAKIGDFGTSRWSQHTNSTGLATYTTKANQSTQMSLAWSAPEVLESGGSTYKSDVYSFGIVVWE 1032          
BLAST of mRNA_P-wetherbeei_contig1931.1.1 vs. uniprot
Match: D8LRE9_ECTSI (Transmembrane receptor kinase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE9_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 3.770e-22
Identity = 58/132 (43.94%), Postives = 71/132 (53.79%), Query Frame = 1
Query:    1 LDDEVWLVQELAPLGSLRERLGRSPSALSDEAKRRILAQIAGGMAYLHGQDVQHRNLKASNILLASDMTAKISDFGLPR-------TVAALTGTETGRPWQESAPWAAPEVLDRQGHVRESDVYGFGVVVWE 375
            L D + LV EL   G LR  L      L +E  RRI+  I  GMA+LH +D  H +LK++N+LL     AKI DFG  R       T  A   T +    Q S  W+APEVL+  G  R SDVY FG+VVWE
Sbjct:  751 LPDRMVLVMELLSGGDLRTLLRNYQQPLPEEQSRRIIGDICAGMAFLHSKDTVHGDLKSANVLLDGSGRAKIGDFGTSRWSQHTNSTGLATYTTRSSPGTQMSLAWSAPEVLESGGSTRASDVYSFGIVVWE 882          
BLAST of mRNA_P-wetherbeei_contig1931.1.1 vs. uniprot
Match: D7FL57_ECTSI (Hypothetical leucine rich repeat kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL57_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 5.160e-22
Identity = 57/132 (43.18%), Postives = 76/132 (57.58%), Query Frame = 1
Query:    1 LDDEVWLVQELAPLGSLRERLGRSPSALSDEAKRRILAQIAGGMAYLHGQDVQHRNLKASNILLASDMTAKISDFGLPR-------TVAALTGTETGRPWQESAPWAAPEVLDRQGHVRESDVYGFGVVVWE 375
            L D + LV EL   G L   L +S  AL  +  R+I+  I  GMA+LHG++  H +LK++N+LL  D  AKI+DFG  R       T  A   T + +    S  W+APEVL+ +G   ESDVY FG+VVWE
Sbjct:  782 LPDRMVLVMELLAGGDLLTLLRKSKKALPGQQSRQIIRDICTGMAFLHGKNTVHGDLKSANVLLDGDGRAKIADFGTSRWTQTTNSTGLATYTTRSSQTTLMSIAWSAPEVLESEGSSYESDVYSFGIVVWE 913          
BLAST of mRNA_P-wetherbeei_contig1931.1.1 vs. uniprot
Match: D8LHV1_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHV1_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.800e-21
Identity = 57/129 (44.19%), Postives = 69/129 (53.49%), Query Frame = 1
Query:    7 DEVWLVQELAPLGSLRERLGRSPSALSDEAKRRILAQIAGGMAYLHGQDVQHRNLKASNILLASDMTAKISDFGLPR------TVAALTGTETGRPWQESAPWAAPEVLDRQGHVRESDVYGFGVVVWE 375
            D + LV EL   G LR  L  S   L  E  RRI+  I  GMA+LH +D  H +LK++N+LL     AKI DFG  R      +    T T T    Q S  W+APEVL+  G    SDVY FG+VVWE
Sbjct:  892 DHMVLVMELLSGGDLRTLLRTSEQPLPQEQSRRIIGDICAGMAFLHEKDTVHGDLKSANVLLDGSGRAKIGDFGTSRWSQHTHSTGLATYTTTKPSTQMSLAWSAPEVLESGGSTYASDVYSFGIVVWE 1020          
BLAST of mRNA_P-wetherbeei_contig1931.1.1 vs. uniprot
Match: D7FN19_ECTSI (Putative CTR1-like protein kinase/ leucine rich repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN19_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 2.460e-21
Identity = 58/133 (43.61%), Postives = 72/133 (54.14%), Query Frame = 1
Query:    1 LDDEVWLVQELAPLGSLRERLGRSPSALSDEAKRRILAQIAGGMAYLHGQDVQHRNLKASNILLASDMTAKISDFGLPR--------TVAALTGTETGRPWQESAPWAAPEVLDRQGHVRESDVYGFGVVVWE 375
            L D + LV EL P G LR  L  S   L +E  R+I+  I  GMA+LH +   H +LK++NILL +   AKI DFG  R        T  A   T  G     S  W APEVL++Q   + SDVY FG+VVWE
Sbjct:  960 LPDRLILVLELLPGGDLRTMLKNSEQPLPEEQSRQIIKDICAGMAFLHSKSTVHGDLKSANILLDARGRAKIGDFGTSRWTQNTERSTGLATYTTNPGPSTHISFAWTAPEVLEKQTTSKASDVYSFGIVVWE 1092          
BLAST of mRNA_P-wetherbeei_contig1931.1.1 vs. uniprot
Match: A0A6B2LI98_9EUKA (Protein kinase domain-containing protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LI98_9EUKA)

HSP 1 Score: 92.8 bits (229), Expect = 3.320e-21
Identity = 51/126 (40.48%), Postives = 74/126 (58.73%), Query Frame = 1
Query:   10 EVWLVQELAPLGSLRERLGRSPSALSDEAKRRILAQIAGGMAYLHGQDVQHRNLKASNILLASDMTAKISDFGLPR----TVAALTGTETGRPWQESAPWAAPEVLDRQGHVRESDVYGFGVVVWE 375
            ++ +V E    GSLR+ L  +   + +E  RR    +  GM++LH Q+V HR+LKASN+L+  D T K++DFGL R    +  +LT T  G P      WAAPEVL  Q +  ++DVY F + +WE
Sbjct:    6 DISIVTEYMSRGSLRKILHDTAILIEEEHIRRFALDVCNGMSFLHAQNVIHRDLKASNLLVDRDWTVKVADFGLSREGNESDHSLTMTACGTP-----AWAAPEVLQTQRYSAKADVYSFSICLWE 126          
BLAST of mRNA_P-wetherbeei_contig1931.1.1 vs. uniprot
Match: A0A6H5JSI8_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI8_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 8.370e-21
Identity = 55/132 (41.67%), Postives = 74/132 (56.06%), Query Frame = 1
Query:    1 LDDEVWLVQELAPLGSLRERLGRSPSALSDEAKRRILAQIAGGMAYLHGQDVQHRNLKASNILLASDMTAKISDFGLPRTVAALTGT-------ETGRPWQESAPWAAPEVLDRQGHVRESDVYGFGVVVWE 375
            L D + LV EL   G L   L +S  AL +E  R I+  I  GMA+LH ++  H +LK++N+LL     AKI+DFG  R    +  T       ++ +  Q S  W+APEVLD +    ESDVY FG+VVWE
Sbjct:  698 LPDRMVLVMELLAGGDLLTLLRKSKKALPEEQSRLIIRDICTGMAFLHSKNTVHGDLKSANVLLDDIGRAKIADFGTSRWTQTINSTGLTTYTTKSSQTTQMSIAWSAPEVLDSEKSSYESDVYSFGIVVWE 829          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1931.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7X7_ECTSI1.710e-2343.94ATP binding / amino acid binding / protein kinase/... [more]
D7G7F2_ECTSI1.710e-2344.70Tyrosine kinase specific for activated (GTP-bound)... [more]
B8CC40_THAPS2.160e-2345.53Protein kinase domain-containing protein (Fragment... [more]
A0A6H5KF25_9PHAE2.330e-2343.94Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LRE9_ECTSI3.770e-2243.94Transmembrane receptor kinase n=2 Tax=Ectocarpus s... [more]
D7FL57_ECTSI5.160e-2243.18Hypothetical leucine rich repeat kinase n=1 Tax=Ec... [more]
D8LHV1_ECTSI1.800e-2144.19Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FN19_ECTSI2.460e-2143.61Putative CTR1-like protein kinase/ leucine rich re... [more]
A0A6B2LI98_9EUKA3.320e-2140.48Protein kinase domain-containing protein (Fragment... [more]
A0A6H5JSI8_9PHAE8.370e-2141.67Protein kinase domain-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1931contigP-wetherbeei_contig1931:4861..5930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LRF5
Preferred nameRIPK4
PFAMsAnk_2,Ank_3,Ank_4,Ank_5,Pkinase,Pkinase_Tyr
Model size375
Max annot lvl2759|Eukaryota
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05169,map04064,map04210,map04217,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05169
Hectar predicted targeting categoryother localisation
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
Exons3
Evalue2.05e-24
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota
EC2.7.11.1
Descriptionprotein kinase activity
Cds size375
COG categoryKLT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186169.326371-CDS-P-wetherbeei_contig1931:4860..49641683186169.326371-CDS-P-wetherbeei_contig1931:4860..4964Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1931 4861..4964 +
1683186169.3393571-CDS-P-wetherbeei_contig1931:5222..53311683186169.3393571-CDS-P-wetherbeei_contig1931:5222..5331Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1931 5223..5331 +
1683186169.3476355-CDS-P-wetherbeei_contig1931:5768..59301683186169.3476355-CDS-P-wetherbeei_contig1931:5768..5930Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1931 5769..5930 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1931.1.1prot_P-wetherbeei_contig1931.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1931 4861..5930 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1931.1.1

>prot_P-wetherbeei_contig1931.1.1 ID=prot_P-wetherbeei_contig1931.1.1|Name=mRNA_P-wetherbeei_contig1931.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=125bp
LDDEVWLVQELAPLGSLRERLGRSPSALSDEAKRRILAQIAGGMAYLHGQ
DVQHRNLKASNILLASDMTAKISDFGLPRTVAALTGTETGRPWQESAPWA
APEVLDRQGHVRESDVYGFGVVVWE
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mRNA from alignment at P-wetherbeei_contig1931:4861..5930+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1931.1.1 ID=mRNA_P-wetherbeei_contig1931.1.1|Name=mRNA_P-wetherbeei_contig1931.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1070bp|location=Sequence derived from alignment at P-wetherbeei_contig1931:4861..5930+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGATGACGAAGTCTGGCTCGTCCAGGAGCTGGCGCCGCTGGGCAGCCT GCGGGAGCGGCTGGGACGCAGTCCCTCCGCCCTCTCTGATGAAGCCAAGC GAAGGTGGGCGCAACAGTCAAGGCACCTGTCCGGTGGCTGAGGAAGCCGG CTCCAGCTTTGCCTGAAGAGCTGCGTGCGAAGTGGCGTGACACGATGCGG CGGCTCCGTTTCGTCGTGATGGGCACCGTTCCGTCTATTGTAGGCTTCGC GACTGATCCAGCACAGCACTCGTTTGTCGTTTCTCAGCGGGAGGAGGTAA TTGGACGCGATTGCTGCTGCGCGCTTTTCACCGAACTGCAGCCGTCGTTC CTGTTTCTACAGGATCCTGGCTCAAATCGCCGGCGGCATGGCGTATTTGC ACGGGCAGGACGTGCAGCACCGCAACCTGAAGGCCTCCAACATCCTCCTG GCCTCAGACATGACGGCAAAGGTCAGCCTGGGAAGCTTGCGGCATCGATG CCTGCGCCTCTGCGAAATAGGCTTTGCAAACAGTGCCGTCATTGGGTCGG GTCGCCGCAATAGTGTCTAGAGGAAGTTAGGAAATTATGGCAAAGGAGAT GAGGATCGTGTAGTTAAGAGGCGCTTAGTCTCAATACCCCTCATTCCGAC TGGCGGATCCAGCACTGCTTGGCTAGGGCCAGCAAGCACTGCAGATGCTC AGGCGATTCTCGAAGGCAAACCTCGCTCTCCTCGGGGCCTCGGCTCCCCG TCTGCTGACTCGAATTGCTGGTACCTCGACTCGCGCACATACTACCGCTG CCGCCGCCACTTCGTTCCAACGGCCGGGCGCTTTGCTTCCAATTTCCGTC ACTCAGCCCATTACCGCCTCCCGCACATTATTGCCGCGTACCGCTGCCTC CCTTCCAGATCTCGGACTTCGGGCTACCGCGCACGGTGGCGGCGCTGACG GGTACGGAGACTGGACGACCATGGCAGGAGTCTGCGCCGTGGGCCGCCCC CGAGGTGCTCGACCGCCAGGGCCACGTCCGGGAGAGCGACGTCTACGGCT TCGGCGTCGTCGTCTGGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1931:4861..5930+

>mRNA_P-wetherbeei_contig1931.1.1 ID=mRNA_P-wetherbeei_contig1931.1.1|Name=mRNA_P-wetherbeei_contig1931.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig1931:4861..5930+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGATGACGAAGTCTGGCTCGTCCAGGAGCTGGCGCCGCTGGGCAGCCT
GCGGGAGCGGCTGGGACGCAGTCCCTCCGCCCTCTCTGATGAAGCCAAGC
GAAGGATCCTGGCTCAAATCGCCGGCGGCATGGCGTATTTGCACGGGCAG
GACGTGCAGCACCGCAACCTGAAGGCCTCCAACATCCTCCTGGCCTCAGA
CATGACGGCAAAGATCTCGGACTTCGGGCTACCGCGCACGGTGGCGGCGC
TGACGGGTACGGAGACTGGACGACCATGGCAGGAGTCTGCGCCGTGGGCC
GCCCCCGAGGTGCTCGACCGCCAGGGCCACGTCCGGGAGAGCGACGTCTA
CGGCTTCGGCGTCGTCGTCTGGGAG
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