mRNA_P-wetherbeei_contig19308.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19308.1.1
Unique NamemRNA_P-wetherbeei_contig19308.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19308.1.1 vs. uniprot
Match: A0A6J1IEM0_CUCMA (PHD finger protein EHD3-like n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1IEM0_CUCMA)

HSP 1 Score: 63.5 bits (153), Expect = 2.040e-10
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    1 CPTPTCMACDARGVPWRAVVCCDGCDTEYHLKCLQPPLAAQPRGEWYCNSCEA 159
            CP+  C AC       + +V CDGCD  YH+ C++PPLAA P+G+W+C+ CEA
Sbjct:  492 CPSCLCRACLVNQDDDK-IVLCDGCDHGYHIYCMRPPLAAIPKGQWFCSKCEA 543
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BLAST of mRNA_P-wetherbeei_contig19308.1.1 vs. uniprot
Match: A0A6J1DJP9_MOMCH (PHD finger protein EHD3 n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1DJP9_MOMCH)

HSP 1 Score: 62.8 bits (151), Expect = 3.800e-10
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    1 CPTPTCMACDARGVPWRAVVCCDGCDTEYHLKCLQPPLAAQPRGEWYCNSCEA 159
            CP+  C AC       + +V CDGCD  YH+ C++PPLAA P+G+W+C+ CEA
Sbjct:  485 CPSCLCRACLINQDDDK-IVLCDGCDHGYHIYCMRPPLAAIPKGKWFCDKCEA 536
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BLAST of mRNA_P-wetherbeei_contig19308.1.1 vs. uniprot
Match: A0A150GWG0_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GWG0_GONPE)

HSP 1 Score: 60.5 bits (145), Expect = 2.500e-9
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   49 RAVVCCDGCDTEYHLKCLQPPLAAQPRGEWYCNSCE 156
            R ++ CDGCDT +HL CLQPPLAA PRG W C +C+
Sbjct: 1159 RRMLLCDGCDTGWHLGCLQPPLAAVPRGTWVCGACK 1194
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BLAST of mRNA_P-wetherbeei_contig19308.1.1 vs. uniprot
Match: A0A804IF95_MUSAM (Uncharacterized protein n=5 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804IF95_MUSAM)

HSP 1 Score: 60.1 bits (144), Expect = 3.400e-9
Identity = 25/53 (47.17%), Postives = 32/53 (60.38%), Query Frame = 1 
Query:    1 CPTPTCMACDARGVPWRAVVCCDGCDTEYHLKCLQPPLAAQPRGEWYCNSCEA 159
            CP+  C AC       R +V CDGCD  YH  C++PP  + P+G+WYC SC A
Sbjct:  622 CPSCLCRACFCDKDDDR-IVLCDGCDEAYHTYCMRPPCTSIPKGQWYCQSCNA 673
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BLAST of mRNA_P-wetherbeei_contig19308.1.1 vs. uniprot
Match: A0A7S0PN12_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0PN12_9CHLO)

HSP 1 Score: 60.1 bits (144), Expect = 3.420e-9
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:   55 VVCCDGCDTEYHLKCLQPPLAAQPRGEWYCNSC 153
            V+ CD CD EYH+KCL PPL A+P GEW+C  C
Sbjct:  894 VLLCDSCDAEYHIKCLDPPLLAEPEGEWFCPKC 926
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BLAST of mRNA_P-wetherbeei_contig19308.1.1 vs. uniprot
Match: Q01B57_OSTTA (Zinc finger, PHD-finger n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q01B57_OSTTA)

HSP 1 Score: 60.1 bits (144), Expect = 3.420e-9
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:   55 VVCCDGCDTEYHLKCLQPPLAAQPRGEWYCNSC 153
            V+ CD CD EYH KCL PPL+A+P GEW+C +C
Sbjct:  917 VLLCDSCDAEYHTKCLDPPLSAEPEGEWFCPTC 949
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BLAST of mRNA_P-wetherbeei_contig19308.1.1 vs. uniprot
Match: A0A444G542_ENSVE (PHD-type domain-containing protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444G542_ENSVE)

HSP 1 Score: 59.7 bits (143), Expect = 4.630e-9
Identity = 25/53 (47.17%), Postives = 32/53 (60.38%), Query Frame = 1 
Query:    1 CPTPTCMACDARGVPWRAVVCCDGCDTEYHLKCLQPPLAAQPRGEWYCNSCEA 159
            CP+  C AC       R +V CDGCD  YH  C++PP  + P+G+WYC SC A
Sbjct:  392 CPSCLCRACFCDKDDDR-IVLCDGCDEAYHTYCMRPPRTSIPKGQWYCQSCNA 443
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BLAST of mRNA_P-wetherbeei_contig19308.1.1 vs. uniprot
Match: A0A166IEC5_9AGAM (RCC1/BLIP-II protein n=1 Tax=Fibularhizoctonia sp. CBS 109695 TaxID=436010 RepID=A0A166IEC5_9AGAM)

HSP 1 Score: 59.7 bits (143), Expect = 4.640e-9
Identity = 25/48 (52.08%), Postives = 29/48 (60.42%), Query Frame = 1 
Query:   16 CMACDARGVPWRAVVCCDGCDTEYHLKCLQPPLAAQPRGEWYCNSCEA 159
            C+ C+        V+ CD CD  YHLKCL PPLAA P GEW+C  C A
Sbjct:  442 CVVCNVDDGDGDDVLQCDKCDYPYHLKCLNPPLAAVPDGEWFCPKCSA 489
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BLAST of mRNA_P-wetherbeei_contig19308.1.1 vs. uniprot
Match: A0A426YXE9_ENSVE (Uncharacterized protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A426YXE9_ENSVE)

HSP 1 Score: 59.7 bits (143), Expect = 4.640e-9
Identity = 25/53 (47.17%), Postives = 32/53 (60.38%), Query Frame = 1 
Query:    1 CPTPTCMACDARGVPWRAVVCCDGCDTEYHLKCLQPPLAAQPRGEWYCNSCEA 159
            CP+  C AC       R +V CDGCD  YH  C++PP  + P+G+WYC SC A
Sbjct:  479 CPSCLCRACFCDKDDDR-IVLCDGCDEAYHTYCMRPPRTSIPKGQWYCQSCNA 530
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BLAST of mRNA_P-wetherbeei_contig19308.1.1 vs. uniprot
Match: A0A1S4AUU1_TOBAC (methyl-CpG-binding domain-containing protein 9-like n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S4AUU1_TOBAC)

HSP 1 Score: 59.7 bits (143), Expect = 4.660e-9
Identity = 23/34 (67.65%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:   55 VVCCDGCDTEYHLKCLQPPLAAQPRGEWYCNSCE 156
            V+ CDGCD+EYH  CL PPL   P GEWYC SCE
Sbjct: 1072 VLLCDGCDSEYHTYCLDPPLIKVPDGEWYCPSCE 1105
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19308.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6J1IEM0_CUCMA2.040e-1049.06PHD finger protein EHD3-like n=3 Tax=Cucurbita Tax... [more]
A0A6J1DJP9_MOMCH3.800e-1049.06PHD finger protein EHD3 n=1 Tax=Momordica charanti... [more]
A0A150GWG0_GONPE2.500e-963.89Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A804IF95_MUSAM3.400e-947.17Uncharacterized protein n=5 Tax=Musa acuminata sub... [more]
A0A7S0PN12_9CHLO3.420e-963.64Hypothetical protein n=1 Tax=Ostreococcus mediterr... [more]
Q01B57_OSTTA3.420e-963.64Zinc finger, PHD-finger n=2 Tax=Ostreococcus tauri... [more]
A0A444G542_ENSVE4.630e-947.17PHD-type domain-containing protein n=1 Tax=Ensete ... [more]
A0A166IEC5_9AGAM4.640e-952.08RCC1/BLIP-II protein n=1 Tax=Fibularhizoctonia sp.... [more]
A0A426YXE9_ENSVE4.640e-947.17Uncharacterized protein n=1 Tax=Ensete ventricosum... [more]
A0A1S4AUU1_TOBAC4.660e-967.65methyl-CpG-binding domain-containing protein 9-lik... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19308contigP-wetherbeei_contig19308:624..782 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog70448.Q01B57
PFAMsFYRC,MBD,PHD,WHIM1,WSD
Model size159
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.28e-10
EggNOG OGs2CMNF@1|root,2QQZG@2759|Eukaryota,37REE@33090|Viridiplantae,34IQK@3041|Chlorophyta
DescriptionPHD zinc finger
Cds size141
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186169.2878804-UTR-P-wetherbeei_contig19308:623..6411683186169.2878804-UTR-P-wetherbeei_contig19308:623..641Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19308 624..641 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186169.2983057-CDS-P-wetherbeei_contig19308:641..7821683186169.2983057-CDS-P-wetherbeei_contig19308:641..782Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19308 642..782 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19308.1.1prot_P-wetherbeei_contig19308.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19308 642..782 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19308.1.1

>prot_P-wetherbeei_contig19308.1.1 ID=prot_P-wetherbeei_contig19308.1.1|Name=mRNA_P-wetherbeei_contig19308.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=47bp
MACDARGVPWRAVVCCDGCDTEYHLKCLQPPLAAQPRGEWYCNSCEA
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mRNA from alignment at P-wetherbeei_contig19308:624..782+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19308.1.1 ID=mRNA_P-wetherbeei_contig19308.1.1|Name=mRNA_P-wetherbeei_contig19308.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=159bp|location=Sequence derived from alignment at P-wetherbeei_contig19308:624..782+ (Phaeothamnion wetherbeei SAG_119_79)
TGCCCGACGCCGACGTGCATGGCCTGCGACGCGCGCGGCGTCCCGTGGCG
GGCTGTGGTGTGCTGCGATGGCTGCGATACTGAGTATCACCTGAAGTGCC
TCCAGCCGCCGCTCGCGGCGCAGCCGCGCGGAGAGTGGTACTGCAACAGC
TGCGAGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19308:624..782+

>mRNA_P-wetherbeei_contig19308.1.1 ID=mRNA_P-wetherbeei_contig19308.1.1|Name=mRNA_P-wetherbeei_contig19308.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=141bp|location=Sequence derived from alignment at P-wetherbeei_contig19308:624..782+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCTGCGACGCGCGCGGCGTCCCGTGGCGGGCTGTGGTGTGCTGCGA
TGGCTGCGATACTGAGTATCACCTGAAGTGCCTCCAGCCGCCGCTCGCGG
CGCAGCCGCGCGGAGAGTGGTACTGCAACAGCTGCGAGGCG
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