mRNA_P-wetherbeei_contig19278.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19278.1.1
Unique NamemRNA_P-wetherbeei_contig19278.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19278.1.1 vs. uniprot
Match: D7FM85_ECTSI (KH_dom_type_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM85_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.150e-13
Identity = 29/48 (60.42%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:   31 QMQMMIPDSMVGAVLGRRGSTVVEIQNFTGARIQISQRGDFVAGTSNR 174
            QMQ+ IPD +VG +LG+ G+TV+++QN TGARIQ+SQRG+++ GT+NR
Sbjct:    9 QMQVAIPDHLVGVILGKGGATVIDMQNQTGARIQVSQRGEYIPGTTNR 56
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BLAST of mRNA_P-wetherbeei_contig19278.1.1 vs. uniprot
Match: A0A6H5KV61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV61_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 4.100e-13
Identity = 30/48 (62.50%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:   31 QMQMMIPDSMVGAVLGRRGSTVVEIQNFTGARIQISQRGDFVAGTSNR 174
            QMQ+ IPD +VG +LG+RG+TV+++QN TGARIQ+SQRG+++ GT+NR
Sbjct: 1056 QMQVAIPDHLVGVILGKRGATVIDMQNQTGARIQVSQRGEYIPGTTNR 1103
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BLAST of mRNA_P-wetherbeei_contig19278.1.1 vs. uniprot
Match: A0A1Z5K9F8_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9F8_FISSO)

HSP 1 Score: 68.2 bits (165), Expect = 6.480e-12
Identity = 30/59 (50.85%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    7 AAPAEGLVQMQMMIPDSMVGAVLGRRGSTVVEIQNFTGARIQISQRGDFVAGTSNRYRK 183
            A  A G+  +Q+++PDSM+G++LGR GST+ E++N +G RI+ SQRG+FV GT +R  K
Sbjct:  295 ALVAPGVFSVQLLVPDSMIGSILGRGGSTLTELENLSGTRIRASQRGEFVPGTRSRIVK 353
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BLAST of mRNA_P-wetherbeei_contig19278.1.1 vs. uniprot
Match: A0A1Z5JVE4_FISSO (RNA-binding protein Nova n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JVE4_FISSO)

HSP 1 Score: 68.2 bits (165), Expect = 6.770e-12
Identity = 30/59 (50.85%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    7 AAPAEGLVQMQMMIPDSMVGAVLGRRGSTVVEIQNFTGARIQISQRGDFVAGTSNRYRK 183
            A  A G+  +Q+++PDSM+G++LGR GST+ E++N +G RI+ SQRG+FV GT +R  K
Sbjct:  556 ALVAPGVFSVQLLVPDSMIGSILGRGGSTLTELENLSGTRIRASQRGEFVPGTRSRIVK 614
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BLAST of mRNA_P-wetherbeei_contig19278.1.1 vs. uniprot
Match: F7ACQ0_XENTR (Neuro-oncological ventral antigen 2 n=7 Tax=Xenopus TaxID=8353 RepID=F7ACQ0_XENTR)

HSP 1 Score: 65.9 bits (159), Expect = 4.320e-11
Identity = 30/58 (51.72%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    1 MGAAPAEGLVQMQMMIPDSMVGAVLGRRGSTVVEIQNFTGARIQISQRGDFVAGTSNR 174
            MGA    G   ++M +P+++VGA+LG+ G T+VE Q  TGARIQIS++G+FV GT +R
Sbjct:  340 MGAESVTGKETLEMAVPETLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRSR 397
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BLAST of mRNA_P-wetherbeei_contig19278.1.1 vs. uniprot
Match: Q7ZWS0_XENLA (MGC53786 protein n=1 Tax=Xenopus laevis TaxID=8355 RepID=Q7ZWS0_XENLA)

HSP 1 Score: 65.5 bits (158), Expect = 4.680e-11
Identity = 30/58 (51.72%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    1 MGAAPAEGLVQMQMMIPDSMVGAVLGRRGSTVVEIQNFTGARIQISQRGDFVAGTSNR 174
            MGA    G   ++M +P+++VGA+LG+ G T+VE Q  TGARIQIS++G+FV GT +R
Sbjct:  221 MGAESLAGKETLEMAVPETLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRSR 278
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BLAST of mRNA_P-wetherbeei_contig19278.1.1 vs. uniprot
Match: A0A2G8L9G0_STIJA (Nova n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8L9G0_STIJA)

HSP 1 Score: 63.5 bits (153), Expect = 6.160e-11
Identity = 28/52 (53.85%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:   19 EGLVQMQMMIPDSMVGAVLGRRGSTVVEIQNFTGARIQISQRGDFVAGTSNR 174
            E +V+++  +P+S+VGA+LG+ G T+VE QN++GA+IQIS++G+FV GT NR
Sbjct:   96 ENVVEVE--VPESLVGAILGKSGKTLVEFQNYSGAKIQISKKGEFVPGTRNR 145
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BLAST of mRNA_P-wetherbeei_contig19278.1.1 vs. uniprot
Match: UPI0015A63298 (RNA-binding protein Nova-2-like n=1 Tax=Oxyura jamaicensis TaxID=8884 RepID=UPI0015A63298)

HSP 1 Score: 64.3 bits (155), Expect = 1.210e-10
Identity = 29/55 (52.73%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:   13 PAEGLVQM-QMMIPDSMVGAVLGRRGSTVVEIQNFTGARIQISQRGDFVAGTSNR 174
            PAEG  ++ ++ +P+++VGA+LG+ G T+VE Q  TGARIQIS++GDF+ GT +R
Sbjct:  221 PAEGAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGDFIPGTRSR 275
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BLAST of mRNA_P-wetherbeei_contig19278.1.1 vs. uniprot
Match: A0A8B9CXC6_9AVES (KH domain-containing protein n=1 Tax=Anser brachyrhynchus TaxID=132585 RepID=A0A8B9CXC6_9AVES)

HSP 1 Score: 62.0 bits (149), Expect = 1.250e-10
Identity = 29/58 (50.00%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    4 GAAPAEGLVQM-QMMIPDSMVGAVLGRRGSTVVEIQNFTGARIQISQRGDFVAGTSNR 174
            GA   EG  ++ ++ +P+++VGA+LG+ G T+VE Q  TGARIQIS++GDF+ GT +R
Sbjct:   45 GARGDEGAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGDFIPGTRSR 102
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BLAST of mRNA_P-wetherbeei_contig19278.1.1 vs. uniprot
Match: A0A836CCL5_9STRA (KH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCL5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.250e-10
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   10 APAEGLVQMQMMIPDSMVGAVLGRRGSTVVEIQ----NFTGARIQISQRGDFVAGTSNR 174
            A A  +  + + IPD+MVGA+LGR G+T+ E+Q      +GARI +SQRGDF+ GTSNR
Sbjct:   13 AGAAAVTTITVSIPDNMVGAILGRGGATINELQASGRRTSGARINVSQRGDFIPGTSNR 71
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19278.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM85_ECTSI1.150e-1360.42KH_dom_type_1 domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KV61_9PHAE4.100e-1362.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Z5K9F8_FISSO6.480e-1250.85Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1Z5JVE4_FISSO6.770e-1250.85RNA-binding protein Nova n=1 Tax=Fistulifera solar... [more]
F7ACQ0_XENTR4.320e-1151.72Neuro-oncological ventral antigen 2 n=7 Tax=Xenopu... [more]
Q7ZWS0_XENLA4.680e-1151.72MGC53786 protein n=1 Tax=Xenopus laevis TaxID=8355... [more]
A0A2G8L9G0_STIJA6.160e-1153.85Nova n=1 Tax=Stichopus japonicus TaxID=307972 RepI... [more]
UPI0015A632981.210e-1052.73RNA-binding protein Nova-2-like n=1 Tax=Oxyura jam... [more]
A0A8B9CXC6_9AVES1.250e-1050.00KH domain-containing protein n=1 Tax=Anser brachyr... [more]
A0A836CCL5_9STRA1.250e-1052.54KH domain-containing protein n=1 Tax=Tribonema min... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19278contigP-wetherbeei_contig19278:1112..1294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FM85
PFAMsKH_1
Model size183
Max annot lvl2759|Eukaryota
KEGG koko:K14944
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009719,GO:0009725,GO:0009735,GO:0009987,GO:0010033,GO:0010467,GO:0016070,GO:0034641,GO:0042221,GO:0042592,GO:0043170,GO:0043900,GO:0043903,GO:0044237,GO:0044238,GO:0046483,GO:0046719,GO:0048878,GO:0050789,GO:0050792,GO:0050896,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363
Exons1
Evalue1.88e-14
EggNOG OGsKOG2191@1|root,KOG2191@2759|Eukaryota
DescriptionRNA splicing
Cds size183
COG categoryA
BRITEko00000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186168.7700827-CDS-P-wetherbeei_contig19278:1111..12941683186168.7700827-CDS-P-wetherbeei_contig19278:1111..1294Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19278 1112..1294 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19278.1.1prot_P-wetherbeei_contig19278.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19278 1112..1294 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19278.1.1

>prot_P-wetherbeei_contig19278.1.1 ID=prot_P-wetherbeei_contig19278.1.1|Name=mRNA_P-wetherbeei_contig19278.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=61bp
MGAAPAEGLVQMQMMIPDSMVGAVLGRRGSTVVEIQNFTGARIQISQRGD
FVAGTSNRYRK
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mRNA from alignment at P-wetherbeei_contig19278:1112..1294+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19278.1.1 ID=mRNA_P-wetherbeei_contig19278.1.1|Name=mRNA_P-wetherbeei_contig19278.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig19278:1112..1294+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCGCGGCGCCAGCGGAGGGCCTCGTGCAGATGCAGATGATGATTCC
GGACAGTATGGTCGGCGCGGTTCTCGGGCGCCGCGGCAGTACCGTCGTGG
AGATTCAGAACTTCACCGGCGCCCGCATCCAGATCAGCCAGCGGGGCGAC
TTCGTGGCGGGCACCTCCAACAGGTACCGAAAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19278:1112..1294+

>mRNA_P-wetherbeei_contig19278.1.1 ID=mRNA_P-wetherbeei_contig19278.1.1|Name=mRNA_P-wetherbeei_contig19278.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig19278:1112..1294+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCGCGGCGCCAGCGGAGGGCCTCGTGCAGATGCAGATGATGATTCC
GGACAGTATGGTCGGCGCGGTTCTCGGGCGCCGCGGCAGTACCGTCGTGG
AGATTCAGAACTTCACCGGCGCCCGCATCCAGATCAGCCAGCGGGGCGAC
TTCGTGGCGGGCACCTCCAACAGGTACCGAAAA
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