mRNA_P-wetherbeei_contig19269.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig19269.1.1 vs. uniprot
Match: A0A6L5C5N3_9INSE (40S ribosomal protein S29 n=4 Tax=cellular organisms TaxID=131567 RepID=A0A6L5C5N3_9INSE) HSP 1 Score: 342 bits (878), Expect = 1.470e-107 Identity = 191/380 (50.26%), Postives = 256/380 (67.37%), Query Frame = 1
Query: 1 YEFLDRLINIAIPRIRDFRGLNGRAFDGRGNYSMGIKEQIIFPEIDYDKI-----------------DKFAKKRAELKTIIKDEDRSYEDREEARLRLQKLPRDSSPVRGRNRCRLTGRPHGYYRKFGLGRNELRRMAMQGHVPGLEGTDMSMQDPIGDMLTRIRNAQARAKRDVAMPASKRKSAIAEVLKNEGYITDYRVEGEGAAKQLHVELKYFRGKPVIERVWRVSRPGLRIYKTKDQLPSIIGGLGVAIVSTSKGLMSDREARAQGIGGEIICRSDMSRVGKMPIPLPSGVEVTIAGQTVSIKGAKGAMEHVVHVLVSVALQDGVLNVSANDASQASNALSGTTRALLNNMVTGVSAGFTRKLEIVGVGYRAQVQ 1089
+EFLDRL+ IA+PR+RDFRG++G+ FDG+GNY+MG+KEQIIFPEI+ + I ++AKKRA L II + + + E+R EARL+LQ +PR+SSP R RNRC LTGRP G +RKFGL RN++R +A ++M+M DPI DMLTRIRNAQ K V+MP+S+ K AIA VLK+EGY+ D+ V L + LKY+ G+PVIER+ R+S+PGLRIYK D +P ++ GLGVAIVST KG+M+DR+ARA K PI LP+GVE+T+A Q +++KG G ++ H V+V ++ + V+ D + ++A+ GT RA LNNMV GVS GF RKL++VGVGYRAQ Q
Sbjct: 284 FEFLDRLVTIALPRVRDFRGISGKGFDGQGNYNMGVKEQIIFPEIEIEAIMAKLALINREEKRRKLVAQYAKKRAALDAIINNANLTEEERYEARLKLQAMPRNSSPSRLRNRCELTGRPRGVFRKFGLCRNKIRELAF---------SEMAMSDPIADMLTRIRNAQLAEKASVSMPSSRLKVAIAAVLKDEGYVEDFSVRDADGKATLEIGLKYYAGRPVIERIERISKPGLRIYKGCDDIPRVMNGLGVAIVSTPKGVMTDRKARAS----------------KNPIVLPAGVEITVAEQ-IAVKGPLGTLKTAAHPSVTVTVEGQSVAVAKVDGAVNASAMWGTMRANLNNMVNGVSKGFERKLQLVGVGYRAQAQ 637
BLAST of mRNA_P-wetherbeei_contig19269.1.1 vs. uniprot
Match: A0A699GMR7_TANCI (30S ribosomal protein S17, chloroplastic n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699GMR7_TANCI) HSP 1 Score: 339 bits (869), Expect = 1.400e-101 Identity = 188/386 (48.70%), Postives = 249/386 (64.51%), Query Frame = 1
Query: 1 YEFLDRLINIAIPRIRDFRGLNGRAFDGRGNYSMGIKEQIIFPEIDYDKID-----------------------KFAKKRAELKTIIKDEDRSYEDREEARLRLQKLPRDSSPVRGRNRCRLTGRPHGYYRKFGLGRNELRRMAMQGHVPGLEGTDMSMQDPIGDMLTRIRNAQARAKRDVAMPASKRKSAIAEVLKNEGYITDYRVEGEGAAKQLHVELKYFRGKPVIERVWRVSRPGLRIYKTKDQLPSIIGGLGVAIVSTSKGLMSDREARAQGIGGEIICRSDMSRVGKMPIPLPSGVEVTIAGQTVSIKGAKGAMEHVVHVLVSVALQDGVLNVSANDASQASNALSGTTRALLNNMVTGVSAGFTRKLEIVGVGYRAQVQ 1089
YEFLDR I +A+PR+RDFRG+NGR+FDGRGNY++G+KEQIIFPEI+YDKID KFA KRA LK II D+ +S E+R EARL+LQ LPR+S+P R RNRC +TGRP G +RKFGLGR +LR AM+G +PG++ K VAMP+SK K AIA VLK+EGYI D+ V +G +L + LKY+ G+PVIER+ RVSRPGLR+YK KD++P+++ GLGVAIVST +G+M+DR+ARA +G +V I+ Q +++KG G + ++ LV V DG L+ + S+ +NA+SGT RAL+NNMV GV+ GF +KL ++GVGY+AQ Q
Sbjct: 1789 YEFLDRFITVALPRVRDFRGVNGRSFDGRGNYNIGVKEQIIFPEIEYDKIDALREIMAKLALINREAKRVALANKFAAKRASLKAIIDDQSKSEEERYEARLKLQTLPRNSAPTRQRNRCAVTGRPRGTFRKFGLGRIKLREFAMRGEIPGVQ------------------------KATVAMPSSKVKVAIANVLKDEGYIEDFAVAEDGGKAELKIGLKYYVGRPVIERLERVSRPGLRVYKGKDEIPTVMNGLGVAIVSTPQGVMTDRKARAT-----------------------AGADVAISAQAITVKGPLGVLTQNLNGLVKVENNDGTLSFEPANDSREANAMSGTLRALVNNMVNGVTKGFEKKLNLIGVGYKAQAQ 2127
BLAST of mRNA_P-wetherbeei_contig19269.1.1 vs. uniprot
Match: A0A812SBE4_9DINO (30S ribosomal protein S3, chloroplastic n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812SBE4_9DINO) HSP 1 Score: 241 bits (616), Expect = 9.780e-68 Identity = 152/370 (41.08%), Postives = 222/370 (60.00%), Query Frame = 1
Query: 7 FLDRLINIAIPRIRDFRGLNGRAFDGRGNYSMGIKEQIIFPEIDYDKIDKFAKKRAELKTIIKDEDRSYEDREEARLRLQKLPRDSSPVRGRN----RCRLTGRPHGYYRKFGLGRNELRRMAMQGHVPGLEGTDMSMQDPIGDMLTRIRNAQARAKRDVAMPASKRKSAIAEVLKNEGYITDYRVEGEGAAKQLHVELKYF-RGKPVIERVWRVSRPGLRIYKTKDQLPSIIGGLGVAIVSTSKGLMSDREARAQGIGGEIICRSDMSRVGKMPIPLPSGVEVTIAGQTVSIKGAKGAMEHVVHVLVSVALQDGVLNVSAN-DASQASN----ALSGTTRALLNNMVTGVSAGFTRKLEIVGVGYRAQV 1086
FLDRLIN+A+PR++DFRGL ++FD GNYSMG+ EQ IFPEID ++ + + S D ++++ L+ L P R R RC +TGR G YRKF E + +G G + T MSM DPI DMLTRIRN + K++V SK IA++L EGYI + +G ++ V LKY RG+ +I + R S+PG R+YK +++ S + G+G++IVSTS G+MSDR+ R +GGE++ ++ MSR+GK+P+ +PSGV V+++G T++I ++ + V+V+ +G V+ D SN A G TRAL+ NMV GV+ G+ +KLE+VGVGY AQ+
Sbjct: 1946 FLDRLINLAVPRMKDFRGLPDKSFDKAGNYSMGVTEQAIFPEIDMGRVS--FTHGMHINMVF-----SNSDPAKSKMVLESL---GMPFRKREAKVRRCEITGRARGVYRKF----REPPPLNPRGSKEGKDRT-MSMSDPIADMLTRIRNGVSARKKEVMCLNSKVCRGIAQILTEEGYIDGFDTIDDGRQGRIRVRLKYGDRGEDIIHVIKRESKPGCRVYKKAEEITSPLQGMGISIVSTSHGVMSDRKCREDRVGGELLDQA-MSRLGKLPVSVPSGVNVSVSGDTITISKGDKSLTQALRPEVNVSFDEGEKAVAVTIDEKDVSNKQVRAYWGMTRALIQNMVVGVTEGYEKKLEVVGVGYTAQL 2299
BLAST of mRNA_P-wetherbeei_contig19269.1.1 vs. uniprot
Match: A0A2E0ZPH3_9ACTN (Multifunctional fusion protein n=3 Tax=root TaxID=1 RepID=A0A2E0ZPH3_9ACTN) HSP 1 Score: 220 bits (560), Expect = 8.210e-66 Identity = 126/236 (53.39%), Postives = 168/236 (71.19%), Query Frame = 1
Query: 400 MSMQDPIGDMLTRIRNAQARAKRDVAMPASKRKSAIAEVLKNEGYITDYRVEGE---GAAKQLHVELKYFRGKP-VIERVWRVSRPGLRIYKTKDQLPSIIGGLGVAIVSTSKGLMSDREARAQGIGGEIIC-----RSDMSRVGKMPIPLPSGVEVTIAGQTVSIKGAKGAMEHVVHVLVSVALQDGVLNVSANDASQASNALSGTTRALLNNMVTGVSAGFTRKLEIVGVGYRA 1080
M+M DP+ DMLTR+RNA V+MP+SK+K A+A+VLK+EGYI DY V GE G +L ++LKY + VI + RVS+PGLRIY+ +P ++GGLGVA+VSTS+GLMSDREAR + IGGEI+C R DMSR+GK PI +PSGVEVTI Q V++KG KG+++ V ++V + VL+V D + + A+ G TR+L+NNMV GVS GF ++L+IVGVGYRA
Sbjct: 1 MTMTDPMADMLTRLRNANQAMHDGVSMPSSKQKVALADVLKSEGYIADYTV-GEAQRGPGMELTIQLKYSPERQRVISGLQRVSKPGLRIYRKSGTIPRVLGGLGVAVVSTSRGLMSDREARRRRIGGEILCYVWXGRLDMSRIGKFPITVPSGVEVTITDQNVAVKGPKGSLDLDVAEDITVRQEGDVLHVERPDDERRNRAMHGLTRSLVNNMVIGVSXGFMKELQIVGVGYRA 235
BLAST of mRNA_P-wetherbeei_contig19269.1.1 vs. uniprot
Match: A0A7R9AK66_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R9AK66_9CRUS) HSP 1 Score: 209 bits (532), Expect = 4.780e-63 Identity = 120/216 (55.56%), Postives = 155/216 (71.76%), Query Frame = 1
Query: 427 MLTRIRNAQARAKRDVAMPASKRKSAIAEVLKNEGYITDYR---VEGEGAAKQLHVELKYFRGKPVIERVWRVSRPGLRIYKTKDQLPSIIGGLGVAIVSTSKGLMSDREARAQGIGGEIICRSDMSRVGKMPIPLPSGVEVTIAGQTVSIKGAKGAMEHVVHVLVSVALQDGVLNVSAN-DASQASNALSGTTRALLNNMVTGVSAGFTRKLEIV 1062
MLTRIRN Q K VA PASK+K+AI EVL++EGY+ + VEG+ V+LKYF+GKPVI +V RVSRPGLRI++ D+LP+++GG G+AIVSTSKG+MSDR ARA G GGE +MSR+ K + LP GVEV+I+GQ++ +KG+KG+ + VVH V V+ +D VL A D A AL+GTTRAL NNMV GVS GF +KL++V
Sbjct: 1 MLTRIRNGQMANKAQVAFPASKQKNAILEVLQSEGYVASFETGTVEGKPVTT---VKLKYFQGKPVISKVKRVSRPGLRIFRGTDELPTVMGGYGIAIVSTSKGVMSDRAARASGQGGE--AGFEMSRIAKKALTLPKGVEVSISGQSLKVKGSKGSFDFVVHDAVEVSQEDNVLKFKAKRDGDSAGWALAGTTRALANNMVIGVSQGFEKKLQLV 211
BLAST of mRNA_P-wetherbeei_contig19269.1.1 vs. uniprot
Match: M3S4D6_ENTHI (Ribosomal protein L6, putative n=6 Tax=cellular organisms TaxID=131567 RepID=M3S4D6_ENTHI) HSP 1 Score: 211 bits (537), Expect = 6.480e-63 Identity = 121/228 (53.07%), Postives = 150/228 (65.79%), Query Frame = 1
Query: 406 MQDPIGDMLTRIRNAQARAKRDVAMPASKRKSAIAEVLKNEGYITDYRVEGEGAAKQLHVELKYFRGKPVIERVWRVSRPGLRIYKTKDQLPSIIGGLGVAIVSTSKGLMSDREARAQGIGGEIICRSDMSRVGKMPIPLPSGVEVTIAGQTVSIKGAKGAMEHVVHVLVSVALQDGVLNVSANDASQASNALSGTTRALLNNMVTGVSAGFTRKLEIVGVGYRAQVQ 1089
MQDP+ DMLTRIRNAQ K V+MP+SK K+A+A+VLK+EGYI D++V E + L +ELKYF GKPVIE + R SRPGLR YK DQLP + GGLGV MSRV K P+ LP+GVEV +AGQ +SIKGAKGA+E VH V V + G L +A + Q + A++GTTRAL+NNMV GVS GF RKL++VGVGY+AQ +
Sbjct: 1 MQDPLADMLTRIRNAQMAEKAVVSMPSSKLKAAVAKVLKDEGYIADFQVSAE-SKPSLSIELKYFEGKPVIEELKRSSRPGLRQYKAVDQLPKVRGGLGV-----------------------------MSRVAKNPVRLPAGVEVNLAGQALSIKGAKGALELKVHPSVEVTQESGELRFAARNGDQQTRAMAGTTRALVNNMVVGVSQGFERKLQLVGVGYKAQAK 198
BLAST of mRNA_P-wetherbeei_contig19269.1.1 vs. uniprot
Match: A0A354F7C5_9BACT (Multifunctional fusion protein n=4 Tax=Nitrospirae TaxID=40117 RepID=A0A354F7C5_9BACT) HSP 1 Score: 204 bits (520), Expect = 6.010e-60 Identity = 107/231 (46.32%), Postives = 159/231 (68.83%), Query Frame = 1
Query: 400 MSMQDPIGDMLTRIRNAQARAKRDVAMPASKRKSAIAEVLKNEGYITDYRVEGEGAAKQLHVELKYFR-GKPVIERVWRVSRPGLRIYKTKDQLPSIIGGLGVAIVSTSKGLMSDREARAQGIGGEIICRSDMSRVGKMPIPLPSGVEVTIAGQTVSIKGAKGAMEHVVHVLVSVALQDGVLNVSANDASQASNALSGTTRALLNNMVTGVSAGFTRKLEIVGVGYRAQVQ 1089
M M DPI DMLTRIRNA + V +P S+ K+ IA++LK G+I+DY++ GEG AK + V L+Y R P+I + RVS+PG R+Y KD++ ++GG+GV I+STSKG+++DR+A+ G+GGE + +MSR+GK PI +P GV+V I GQ V++KG KG+++ +S+ +D VL+V+ + + + AL G +R L+ NM+ GV GF + LEI GVGY+A +Q
Sbjct: 1 MVMTDPIADMLTRIRNASRQGHATVEIPLSRLKADIAKILKESGFISDYKIAGEGLAKNICVYLRYTREDTPIITGIKRVSKPGCRVYAAKDEVKKVMGGIGVTILSTSKGVVTDRDAKRIGVGGEXX-KGNMSRIGKKPIEIPKGVDVNINGQNVAVKGPKGSLQKSFPSEISITKKDDVLSVTIANTDKETGALHGLSRTLIANMIEGVMKGFEKTLEISGVGYKAMLQ 230
BLAST of mRNA_P-wetherbeei_contig19269.1.1 vs. uniprot
Match: A0A6A5L8X8_LUPAL (30S ribosomal protein S17, chloroplastic n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L8X8_LUPAL) HSP 1 Score: 212 bits (540), Expect = 2.690e-58 Identity = 146/388 (37.63%), Postives = 191/388 (49.23%), Query Frame = 1
Query: 1 YEFLDRLINIAIPRIRDFRGLNGRAFDGRGNYSMGIKEQIIFPEIDYDKIDK----------------------FAKKRAELKTIIKDEDRSYEDREEARLRLQKLPRDSSPVRGRNRCRLTGRPHGYYRKFGLGRNELRRMAMQGHVPGLEGTDMSMQDPIGDMLTRIRNAQARAKRDVAMPASKRKSAIAEVLKNEGYITDYRVEGEGAAKQLHVELKY--FRGKPVIERVWRVSRPGLRIYKTKDQLPSIIGGLGVAIVSTSKGLMSDREARAQGIGGEIICRSDMSRVGKMPIPLPSGVEVTI-AGQTVSIKGAKGAMEHVVHVLVSVALQDGVLNVSANDASQASNALSGTTRALLNNMVTGVSAGFTRKLEIVGVGYRAQVQ 1089
YEFLDRLI +A+PRIRDF+G+N + FDGRGNY++GI EQIIFPEI+ DKI+K FA+KRA LK YE L KLP+ +SPV+ NRC+LTGRP GY R+FG+ R R MA+ G YI +Y+ E G + V LKY P I + R+S+PGLR Y D +P ++ GLG+AI+STSKG+M+D+EAR K PI L GV V++ A V++KG KG + V +++ + L V + AL G RALLNNMV GV+ G+ + E+VGVGYRA Q
Sbjct: 315 YEFLDRLIAVALPRIRDFKGINDKGFDGRGNYTLGISEQIIFPEINIDKINKIQAMAKEGVKAREVKRAKLVAKFAEKRAALKAAG-----DYEA-------LDKLPKAASPVKLHNRCKLTGRPRGYMRQFGISRVTFREMALAG-----------------------------------------------------YIANYKFEENGPQGTIKVALKYHPITKVPAIRSINRISKPGLRKYAGMDTMPRVLNGLGIAILSTSKGVMTDKEAR------------------KAPIALAGGVTVSVSADNVVTVKGPKGELHQAVDRDITIEQEGDQLLVKRPSDQKRHKALHGLYRALLNNMVVGVTTGYKIEQELVGVGYRATNQ 619
BLAST of mRNA_P-wetherbeei_contig19269.1.1 vs. uniprot
Match: A0A812IPA6_SYMPI (RpsE protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812IPA6_SYMPI) HSP 1 Score: 197 bits (500), Expect = 7.990e-55 Identity = 111/230 (48.26%), Postives = 148/230 (64.35%), Query Frame = 1
Query: 400 MSMQDPIGDMLTRIRNAQARAKRDVAMPASKRKSAIAEVLKNEGYITDYRVEGEGAAKQLHVELKYFRGKPVIERVWRVSRPGLRIYKTKDQLPSIIGGLGVAIVSTSKGLMSDREARAQGIGGEIICRSDMSRVGKMPIPLPSGVEVTIAGQTVSIKGAKGAMEHVVHVLVSVALQDGVLNVSANDASQASNALSGTTRALLNNMVTGVSAGFTRKLEIVGVGYRAQVQ 1089
M+MQDPI D+LTRIRNAQ ++V MP SK K +I +VL +EG+I + + E L+V+L+Y G PVIE + RVSRPGLRIYK ++PS+ GGLGVAIVST+KG+M+D+ ARA G+GGE++C + +S+KG+KG M VH V + DG L +A + S A++GT RA++ NMVTGVS GF R+LE+ GVGYRAQ Q
Sbjct: 1 MTMQDPISDLLTRIRNAQMAGHKNVEMPNSKIKRSILKVLLDEGFIDGFTADEE-VKSALNVDLRYHNGSPVIEEIKRVSRPGLRIYKESSEIPSVRGGLGVAIVSTNKGVMTDKRARAAGVGGEVLCTA------------------------LSVKGSKGEMNFGVHNAVIINQGDGELTFAARNGDTGSRAMAGTMRAVVQNMVTGVSTGFERRLELQGVGYRAQAQ 205
BLAST of mRNA_P-wetherbeei_contig19269.1.1 vs. uniprot
Match: A0A8J5DIZ9_9CHEL (40S ribosomal protein S29 n=1 Tax=Nymphon striatum TaxID=424472 RepID=A0A8J5DIZ9_9CHEL) HSP 1 Score: 184 bits (467), Expect = 1.660e-53 Identity = 107/210 (50.95%), Postives = 133/210 (63.33%), Query Frame = 1
Query: 154 KFAKKRAELKTIIKDEDRSYEDREEARLRLQKLPRDSSPVRGRNRCRLTGRPHGYYRKFGLGRNELRRMAMQGHVPGLEGTDMSMQDPIGDMLTRIRNAQARAKRDVAMPASKRKSAIAEVLKNEGYITDYRVEGEGAAKQLHVELKYFRGKPVIERVWRVSRPGLRIYKTKDQLPSIIGGLGVAIVSTSKGLMSDREARAQGIGGEIIC 783
K+AK+RAELK II+ S+E+ A LQKLPR+SS VR RNRC +TGRPHG Y KFGL RN+LR AM+G +PGL AS +KSAI +VL++EGYI+ Y V LKYF+G+PVI + R+SRPGLRI+K K+ LPS++ GLGVAIVSTSKG+MSDR ARA G GGE++C
Sbjct: 14 KYAKRRAELKEIIRSPKSSFEEVMAATDSLQKLPRNSSKVRQRNRCVITGRPHGVYSKFGLCRNKLRESAMEGDIPGLT------------------------------KASCKKSAILDVLRDEGYISGYETADVEGKPVTTVALKYFQGEPVINTLKRISRPGLRIFKGKEDLPSVMSGLGVAIVSTSKGVMSDRAARAVGHGGEVLC 193 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19269.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig19269.1.1 >prot_P-wetherbeei_contig19269.1.1 ID=prot_P-wetherbeei_contig19269.1.1|Name=mRNA_P-wetherbeei_contig19269.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=363bp YEFLDRLINIAIPRIRDFRGLNGRAFDGRGNYSMGIKEQIIFPEIDYDKIback to top mRNA from alignment at P-wetherbeei_contig19269:2..1295+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig19269.1.1 ID=mRNA_P-wetherbeei_contig19269.1.1|Name=mRNA_P-wetherbeei_contig19269.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1294bp|location=Sequence derived from alignment at P-wetherbeei_contig19269:2..1295+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig19269:2..1295+ >mRNA_P-wetherbeei_contig19269.1.1 ID=mRNA_P-wetherbeei_contig19269.1.1|Name=mRNA_P-wetherbeei_contig19269.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1089bp|location=Sequence derived from alignment at P-wetherbeei_contig19269:2..1295+ (Phaeothamnion wetherbeei SAG_119_79)back to top |