mRNA_P-wetherbeei_contig19262.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19262.1.1
Unique NamemRNA_P-wetherbeei_contig19262.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19262.1.1 vs. uniprot
Match: A0A836CML4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CML4_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 7.200e-17
Identity = 38/56 (67.86%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:    1 ERTTDAGVITQIRAQNFMCHHNLTIDLHRRVNFINGSNGAGKSAILAALQICLGAR 168
            ++ +++GVI +I  +NFMCH +LT+DL R +NFINGSNG+GKSAILAALQICLGAR
Sbjct:   69 KQISESGVILRIDVKNFMCHRHLTVDLCRNINFINGSNGSGKSAILAALQICLGAR 124
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BLAST of mRNA_P-wetherbeei_contig19262.1.1 vs. uniprot
Match: A0A7S4ALY8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ALY8_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.000e-16
Identity = 34/54 (62.96%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    4 RTTDAGVITQIRAQNFMCHHNLTIDLHRRVNFINGSNGAGKSAILAALQICLGA 165
            +  +AG++T+I  +NFMCH  LT+DL+R +NFI G NG+GKSAILAA+QICLGA
Sbjct:  103 KPAEAGILTRIYVENFMCHRKLTVDLNRNINFIYGQNGSGKSAILAAIQICLGA 156
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BLAST of mRNA_P-wetherbeei_contig19262.1.1 vs. uniprot
Match: A0A448ZJ22_9STRA (SMC_N domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZJ22_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.830e-16
Identity = 38/51 (74.51%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:   13 DAGVITQIRAQNFMCHHNLTIDLHRRVNFINGSNGAGKSAILAALQICLGA 165
            +AGVIT+I A+NFMCH  LT+DL+R VNFI G NG+GKSAILAA+QICLGA
Sbjct:  114 EAGVITRIYAENFMCHRKLTVDLNRNVNFIYGQNGSGKSAILAAIQICLGA 164
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BLAST of mRNA_P-wetherbeei_contig19262.1.1 vs. uniprot
Match: A0A7S1VYB1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1VYB1_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 8.110e-16
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:   13 DAGVITQIRAQNFMCHHNLTIDLHRRVNFINGSNGAGKSAILAALQICLGA 165
            +AGVI +I  +NFMCH  LT++L + VNFING+NG+GKSAILAA+QICLGA
Sbjct:  101 EAGVIKKIYVENFMCHRKLTVELCQNVNFINGANGSGKSAILAAVQICLGA 151
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BLAST of mRNA_P-wetherbeei_contig19262.1.1 vs. uniprot
Match: F0YEV5_AURAN (SMC_N domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEV5_AURAN)

HSP 1 Score: 74.3 bits (181), Expect = 9.910e-16
Identity = 35/55 (63.64%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 ERTTDAGVITQIRAQNFMCHHNLTIDLHRRVNFINGSNGAGKSAILAALQICLGA 165
            + ++ AG+I +I  ++FMCH  LTI   RR+NFING+NG+GKSAILAALQICLGA
Sbjct:    6 DSSSSAGIIHEIYCEHFMCHKKLTIKPCRRINFINGANGSGKSAILAALQICLGA 60
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BLAST of mRNA_P-wetherbeei_contig19262.1.1 vs. uniprot
Match: A0A7S4NJE4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NJE4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.190e-15
Identity = 35/54 (64.81%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    4 RTTDAGVITQIRAQNFMCHHNLTIDLHRRVNFINGSNGAGKSAILAALQICLGA 165
            +  +AGVIT++  +NFMCH  LT+DL R VNFI+G NG+GKSA+LAA+QICLGA
Sbjct:  197 KAAEAGVITRVYVENFMCHRKLTVDLCRNVNFIHGQNGSGKSAVLAAVQICLGA 250
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BLAST of mRNA_P-wetherbeei_contig19262.1.1 vs. uniprot
Match: D7G4M2_ECTSI (Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M2_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 4.150e-15
Identity = 35/56 (62.50%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 ERTTDAGVITQIRAQNFMCHHNLTIDLHRRVNFINGSNGAGKSAILAALQICLGAR 168
            ++ ++AGV+ +I   NFMCH  LT+ L ++VNFING NG+GKSAILAALQICLGA+
Sbjct:  171 KKKSEAGVVLKINVSNFMCHRKLTVPLCKQVNFINGRNGSGKSAILAALQICLGAK 226
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BLAST of mRNA_P-wetherbeei_contig19262.1.1 vs. uniprot
Match: A0A8J2X4G0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X4G0_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 7.740e-15
Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 ERTTDAGVITQIRAQNFMCHHNLTIDLHRRVNFINGSNGAGKSAILAALQICLGA 165
            E ++ AG+I +I  +NFMCH  L I L RR+NFING+NG+GKSAILAA+QICLGA
Sbjct:   95 EDSSSAGLIKEIYCENFMCHKKLEIKLGRRINFINGANGSGKSAILAAMQICLGA 149
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BLAST of mRNA_P-wetherbeei_contig19262.1.1 vs. uniprot
Match: A0A6V2GEJ9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2GEJ9_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.050e-14
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:   13 DAGVITQIRAQNFMCHHNLTIDLHRRVNFINGSNGAGKSAILAALQICLGA 165
            +AGVI +I  +NFMCH  LT++L + VNFING+NG+GKSAILAA+QICLGA
Sbjct:  101 EAGVIKKIYVENFMCHRKLTVELCQNVNFINGANGSGKSAILAAVQICLGA 151
[Close]
BLAST of mRNA_P-wetherbeei_contig19262.1.1 vs. uniprot
Match: A0A7S4RG96_9STRA (Hypothetical protein (Fragment) n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RG96_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.430e-14
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:   13 DAGVITQIRAQNFMCHHNLTIDLHRRVNFINGSNGAGKSAILAALQICLGA 165
            +AGVI +I  +NFMCH  LT++L + VNFING+NG+GKSAILAA+QICLGA
Sbjct:  101 EAGVIKKIYVENFMCHRKLTVELCQNVNFINGANGSGKSAILAAVQICLGA 151
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19262.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CML4_9STRA7.200e-1767.86P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S4ALY8_9STRA1.000e-1662.96Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
A0A448ZJ22_9STRA1.830e-1674.51SMC_N domain-containing protein n=1 Tax=Pseudo-nit... [more]
A0A7S1VYB1_9STRA8.110e-1668.63Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
F0YEV5_AURAN9.910e-1663.64SMC_N domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S4NJE4_9STRA1.190e-1564.81Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
D7G4M2_ECTSI4.150e-1562.50Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A8J2X4G0_9STRA7.740e-1565.45Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6V2GEJ9_9STRA1.050e-1468.63Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4RG96_9STRA1.430e-1468.63Hypothetical protein (Fragment) n=3 Tax=Ditylum br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19262contigP-wetherbeei_contig19262:1009..1197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G4M2
Preferred nameSMC6
PFAMsAAA_23,SMC_N
Model size189
Max annot lvl2759|Eukaryota
KEGG koko:K12614,ko:K15014
KEGG TC2.A.57.1
KEGG Pathwayko03018,map03018
KEGG ModuleM00395
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000781,GO:0000793,GO:0000794,GO:0000803,GO:0001674,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007568,GO:0007569,GO:0008094,GO:0008150,GO:0008152,GO:0009410,GO:0009987,GO:0010033,GO:0010243,GO:0014070,GO:0014074,GO:0016043,GO:0016462,GO:0016604,GO:0016605,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019899,GO:0022402,GO:0030915,GO:0031000,GO:0031625,GO:0031974,GO:0031981,GO:0032200,GO:0032502,GO:0032991,GO:0033554,GO:0033676,GO:0034641,GO:0035061,GO:0035861,GO:0036270,GO:0042221,GO:0042493,GO:0042585,GO:0042592,GO:0042623,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043279,GO:0044237,GO:0044238,GO:0044260,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048518,GO:0048522,GO:0048869,GO:0050000,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051276,GO:0051304,GO:0051640,GO:0051641,GO:0051716,GO:0051983,GO:0051984,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0071139,GO:0071704,GO:0071840,GO:0090304,GO:0090398,GO:0090734,GO:0097159,GO:0097240,GO:0098687,GO:0106068,GO:1901360,GO:1901363,GO:1901698,GO:1902494,GO:1990234,GO:1990683
Exons1
Evalue6.8e-16
EggNOG OGsCOG1196@1|root,KOG0250@2759|Eukaryota
EC3.6.4.13
Descriptiondouble-strand break repair via homologous recombination
Cds size189
COG categoryD
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03019,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186168.4135878-CDS-P-wetherbeei_contig19262:1008..11971683186168.4135878-CDS-P-wetherbeei_contig19262:1008..1197Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19262 1009..1197 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19262.1.1prot_P-wetherbeei_contig19262.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19262 1009..1197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19262.1.1

>prot_P-wetherbeei_contig19262.1.1 ID=prot_P-wetherbeei_contig19262.1.1|Name=mRNA_P-wetherbeei_contig19262.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=63bp
ERTTDAGVITQIRAQNFMCHHNLTIDLHRRVNFINGSNGAGKSAILAALQ
ICLGARCASPSA*
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mRNA from alignment at P-wetherbeei_contig19262:1009..1197+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19262.1.1 ID=mRNA_P-wetherbeei_contig19262.1.1|Name=mRNA_P-wetherbeei_contig19262.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig19262:1009..1197+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCGCACCACGGATGCCGGCGTCATCACGCAGATCCGCGCACAAAATTT
CATGTGCCACCACAACTTGACGATCGACCTGCACCGCCGCGTAAACTTCA
TCAACGGCTCCAACGGCGCCGGCAAGAGTGCCATCCTCGCCGCGCTCCAG
ATCTGCCTGGGCGCCCGGTGCGCGTCTCCATCTGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19262:1009..1197+

>mRNA_P-wetherbeei_contig19262.1.1 ID=mRNA_P-wetherbeei_contig19262.1.1|Name=mRNA_P-wetherbeei_contig19262.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig19262:1009..1197+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCGCACCACGGATGCCGGCGTCATCACGCAGATCCGCGCACAAAATTT
CATGTGCCACCACAACTTGACGATCGACCTGCACCGCCGCGTAAACTTCA
TCAACGGCTCCAACGGCGCCGGCAAGAGTGCCATCCTCGCCGCGCTCCAG
ATCTGCCTGGGCGCCCGGTGCGCGTCTCCATCTGCCTGA
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