mRNA_P-wetherbeei_contig1926.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1926.4.1
Unique NamemRNA_P-wetherbeei_contig1926.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1926.4.1 vs. uniprot
Match: A0A835Z4I4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4I4_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.850e-36
Identity = 72/105 (68.57%), Postives = 85/105 (80.95%), Query Frame = 1
Query:  640 RKDRERHLVDAIPKDKEALFAYPVDWAAVERFDIVNGKMRPWVVKKIIEYLGEEETTLIQFVVSKLRLRSPPAAILEELKLVLEEDADVFIAKMWRMLIFCVLKA 954
            RKDR++ LVD IPKDK+ALFAYP+DW  V    IV  KMRPWVV+KI EYLGEEE TLI FV +KL  R+PP A+L+EL+LVLEEDA+VF  KMWRML+FC L+A
Sbjct:  655 RKDRDKVLVDMIPKDKDALFAYPLDWGVVTSHGIVANKMRPWVVRKIREYLGEEEPTLIDFVCAKLEARAPPQAVLDELRLVLEEDAEVFTVKMWRMLVFCALRA 759          
BLAST of mRNA_P-wetherbeei_contig1926.4.1 vs. uniprot
Match: A0A7S3UVP2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVP2_HETAK)

HSP 1 Score: 130 bits (327), Expect = 3.410e-33
Identity = 61/102 (59.80%), Postives = 82/102 (80.39%), Query Frame = 1
Query:  646 DRERHLVDAIPKDKEALFAYPVDWAAVERFDIVNGKMRPWVVKKIIEYLGEEETTLIQFVVSKLRLRSPPAAILEELKLVLEEDADVFIAKMWRMLIFCVLK 951
            ++++ LVD IPK+K ALFAYPV WA V+  DI+  K++ W+VKKI+E+LGEEE TLI F+ SKL   + P +ILEELKLVL++DA++F+ K+WRMLIF VLK
Sbjct:   89 EKQKALVDRIPKEKAALFAYPVAWAVVDEHDIIKSKLKAWIVKKIVEFLGEEEETLIDFICSKLISHADPESILEELKLVLDDDAEIFMVKLWRMLIFHVLK 190          
BLAST of mRNA_P-wetherbeei_contig1926.4.1 vs. uniprot
Match: D7FJT5_ECTSI (Splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJT5_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 6.200e-33
Identity = 66/104 (63.46%), Postives = 84/104 (80.77%), Query Frame = 1
Query:  643 KDRERHLVDAIPKDKEALFAYPVDWAAVERFDIVNGKMRPWVVKKIIEYLGEEETTLIQFVVSKLRLRSPPAAILEELKLVLEEDADVFIAKMWRMLIFCVLKA 954
            K R++ LV +IPKD+E LFAY ++W  VE+ +I+  KMRPW+VKKIIEYLGEEE TL +FV++KL  R+ P  IL+ELKLVLEEDA VF+ KMWRML+FC L+A
Sbjct:  693 KARDKELVGSIPKDREELFAYEINWQMVEQHNIIQSKMRPWIVKKIIEYLGEEEKTLTEFVLTKLGQRAKPQTILDELKLVLEEDAAVFMTKMWRMLVFCTLRA 796          
BLAST of mRNA_P-wetherbeei_contig1926.4.1 vs. uniprot
Match: A0A7S2CNP4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CNP4_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.720e-31
Identity = 57/99 (57.58%), Postives = 76/99 (76.77%), Query Frame = 1
Query:  643 KDRERHLVDAIPKDKEALFAYPVDWAAVERFDIVNGKMRPWVVKKIIEYLGEEETTLIQFVVSKLRLRSPPAAILEELKLVLEEDADVFIAKMWRMLIF 939
            K+R++ +VD IPKDK  LF++P+ W  ++   IV   MRPW+VKKI+EYLGEEE TLI F+++KL   S P AIL+ELKLVL++DA+ F+ KMWRML F
Sbjct:   36 KERDKRIVDRIPKDKATLFSFPIHWDVLDAHRIVATNMRPWIVKKIVEYLGEEEKTLIDFIITKLDQHSNPHAILDELKLVLDDDAETFVLKMWRMLAF 134          
BLAST of mRNA_P-wetherbeei_contig1926.4.1 vs. uniprot
Match: A0A7S2XWQ2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWQ2_9STRA)

HSP 1 Score: 124 bits (310), Expect = 3.810e-30
Identity = 59/97 (60.82%), Postives = 76/97 (78.35%), Query Frame = 1
Query:  649 RERHLVDAIPKDKEALFAYPVDWAAVERFDIVNGKMRPWVVKKIIEYLGEEETTLIQFVVSKLRLRSPPAAILEELKLVLEEDADVFIAKMWRMLIF 939
            +++ LVD IPK+K ALFAY V+W  V + D+V  K+RPWV KKI EYLGEEE TLI F+VS+L  R+ P +IL+EL LVL+EDA++F  K+WRMLIF
Sbjct:  138 QQKDLVDRIPKEKRALFAYKVNWDLVHKHDVVGSKLRPWVSKKITEYLGEEERTLIDFIVSQLMERAHPQSILDELALVLDEDAEIFTVKLWRMLIF 234          
BLAST of mRNA_P-wetherbeei_contig1926.4.1 vs. uniprot
Match: A0A4U5LNI4_STECR (PWI domain-containing protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U5LNI4_STECR)

HSP 1 Score: 114 bits (286), Expect = 4.700e-28
Identity = 49/102 (48.04%), Postives = 77/102 (75.49%), Query Frame = 1
Query:  634 DERKDRERHLVDAIPKDKEALFAYPVDWAAVERFDIVNGKMRPWVVKKIIEYLGEEETTLIQFVVSKLRLRSPPAAILEELKLVLEEDADVFIAKMWRMLIF 939
            +ERK   R L++ IP  K+ LFAYP++W  V+  D+V  ++RPWV KKI+EY+GEEE +L+ FV  K+  +SPP  +L+++ +VL+E+A++F+ KMWR+LI+
Sbjct:    7 EERKKMIRDLIERIPTQKDDLFAYPIEWEFVDE-DLVKSRVRPWVTKKIVEYIGEEEASLVDFVCDKVMAKSPPTKLLKDIAMVLDEEAEIFVVKMWRLLIY 107          
BLAST of mRNA_P-wetherbeei_contig1926.4.1 vs. uniprot
Match: A0A024UWU2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UWU2_9STRA)

HSP 1 Score: 120 bits (302), Expect = 5.510e-27
Identity = 59/105 (56.19%), Postives = 77/105 (73.33%), Query Frame = 1
Query:  640 RKDRERHLVDAIPKDKEALFAYPVDWAAVERFDIVNGKMRPWVVKKIIEYLGEEETTLIQFVVSKLRLRSPPAAILEELKLVLEEDADVFIAKMWRMLIFCVLKA 954
            R D    L+ +IP DK+ LF YPVDW+A E++ +V  KM PWV KKI+EYLGEEE+TLI FV+ +L  R+ P AI++EL  VLE+DA+ F+  MWR LIF VL+A
Sbjct:  444 RSDGVEGLIKSIPTDKKGLFKYPVDWSAAEKYKVVEEKMTPWVTKKIVEYLGEEESTLIGFVLRQLHQRTAPQAIVDELVPVLEQDAETFVLTMWRKLIFEVLRA 548          
BLAST of mRNA_P-wetherbeei_contig1926.4.1 vs. uniprot
Match: A0A1I7YDE2_9BILA (Uncharacterized protein n=3 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I7YDE2_9BILA)

HSP 1 Score: 115 bits (287), Expect = 9.420e-25
Identity = 51/102 (50.00%), Postives = 77/102 (75.49%), Query Frame = 1
Query:  634 DERKDRERHLVDAIPKDKEALFAYPVDWAAVERFDIVNGKMRPWVVKKIIEYLGEEETTLIQFVVSKLRLRSPPAAILEELKLVLEEDADVFIAKMWRMLIF 939
            +ERK   R L++ IP  KE LFAYP+ W+ V+  D+V  ++RPWV KKI+EY+GEEET+L+ FV  K+  +SPP  +L ++ +VL+E+A++F+ KMWR+LI+
Sbjct:  641 EERKKMIRDLIERIPTQKEDLFAYPIQWSFVDE-DLVKSRIRPWVSKKILEYIGEEETSLVDFVCEKVSAQSPPNKLLRDIAMVLDEEAEIFVVKMWRLLIY 741          
BLAST of mRNA_P-wetherbeei_contig1926.4.1 vs. uniprot
Match: A0A6B2L9W9_9EUKA (PWI domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L9W9_9EUKA)

HSP 1 Score: 111 bits (277), Expect = 1.110e-24
Identity = 54/93 (58.06%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  661 LVDAIPKDKEALFAYPVDWAAVERFDIVNGKMRPWVVKKIIEYLGEEETTLIQFVVSKLRLRSPPAAILEELKLVLEEDADVFIAKMWRMLIF 939
            L+D IP +KEALFAY +DWA VE   IV  KMRPWV KKI+E L EEE TLI+++  KL   S P  IL++L++VL+++A  F+ KMWRMLIF
Sbjct:  221 LIDQIPVEKEALFAYVIDWAIVEEKQIVEQKMRPWVTKKIVELLDEEEPTLIEYICKKLCDHSSPQDILDQLQVVLDDEASAFVIKMWRMLIF 313          
BLAST of mRNA_P-wetherbeei_contig1926.4.1 vs. uniprot
Match: A0A024G8J6_9STRA (Uncharacterized protein n=8 Tax=Albugo candida TaxID=65357 RepID=A0A024G8J6_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.070e-24
Identity = 53/95 (55.79%), Postives = 68/95 (71.58%), Query Frame = 1
Query:  655 RHLVDAIPKDKEALFAYPVDWAAVERFDIVNGKMRPWVVKKIIEYLGEEETTLIQFVVSKLRLRSPPAAILEELKLVLEEDADVFIAKMWRMLIF 939
            R L+  IP +KE LF YP+DWA V+R  IV  KM PW+ KKI+ YLGE E  +++F+  KL   + P +ILEEL+LVLE+DADVF+  MWR LIF
Sbjct:  554 RRLIQQIPTEKEELFKYPIDWAIVDRCSIVESKMGPWICKKIVVYLGESEPAMMEFITKKLSSHALPESILEELQLVLEDDADVFVKLMWRKLIF 648          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1926.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z4I4_9STRA1.850e-3668.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3UVP2_HETAK3.410e-3359.80Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7FJT5_ECTSI6.200e-3363.46Splicing factor PWI domain-containing protein / RN... [more]
A0A7S2CNP4_9STRA1.720e-3157.58Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2XWQ2_9STRA3.810e-3060.82Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4U5LNI4_STECR4.700e-2848.04PWI domain-containing protein n=1 Tax=Steinernema ... [more]
A0A024UWU2_9STRA5.510e-2756.19Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1I7YDE2_9BILA9.420e-2550.00Uncharacterized protein n=3 Tax=Steinernema glaser... [more]
A0A6B2L9W9_9EUKA1.110e-2458.06PWI domain-containing protein n=1 Tax=Arcella inte... [more]
A0A024G8J6_9STRA2.070e-2455.79Uncharacterized protein n=8 Tax=Albugo candida Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1926contigP-wetherbeei_contig1926:4896..6065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FJT5
Preferred nameSNU71
PFAMsPWI,RRM_1
Model size957
Max annot lvl2759|Eukaryota
KEGG koko:K12822
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005685,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0010941,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0030532,GO:0031323,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048024,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1903311,GO:1990904
Exons2
Evalue1.02e-33
EggNOG OGsKOG2253@1|root,KOG2253@2759|Eukaryota
DescriptionmRNA processing
Cds size957
COG categoryS
BRITEko00000,ko00001,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186168.3206427-CDS-P-wetherbeei_contig1926:4895..50751683186168.3206427-CDS-P-wetherbeei_contig1926:4895..5075Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1926 4896..5075 -
1683186168.332563-CDS-P-wetherbeei_contig1926:5288..60651683186168.332563-CDS-P-wetherbeei_contig1926:5288..6065Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1926 5289..6065 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1926.4.1prot_P-wetherbeei_contig1926.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1926 4896..6065 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1926.4.1

>prot_P-wetherbeei_contig1926.4.1 ID=prot_P-wetherbeei_contig1926.4.1|Name=mRNA_P-wetherbeei_contig1926.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=319bp
KDRDRDRDRDHRNSRRNGERGSQRDRGAGAGDYGDYGDYGDYGDRGRDRD
RDHRGDGRGDGRGGDDGGGGRKRGRSWEREQLEAERRQRLETEEAERKRL
RRLEVLASLGETKDTSALARAAAVAREAGGGAAAASMPGTAGAAVAGGDA
QTASAAAAAKPAALEVAAASAAGAAMAVRSDACVRAYADAATPAASAAAA
AAAPAAPAGLRDERKDRERHLVDAIPKDKEALFAYPVDWAAVERFDIVNG
KMRPWVVKKIIEYLGEEETTLIQFVVSKLRLRSPPAAILEELKLVLEEDA
DVFIAKMWRMLIFCVLKAV
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mRNA from alignment at P-wetherbeei_contig1926:4896..6065-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1926.4.1 ID=mRNA_P-wetherbeei_contig1926.4.1|Name=mRNA_P-wetherbeei_contig1926.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1170bp|location=Sequence derived from alignment at P-wetherbeei_contig1926:4896..6065- (Phaeothamnion wetherbeei SAG_119_79)
AAGGACCGAGACCGGGATCGGGATCGGGACCACCGGAATAGTCGTCGCAA TGGAGAGCGAGGAAGCCAACGCGACCGCGGCGCTGGCGCTGGAGATTACG GCGATTACGGAGACTACGGTGACTACGGCGACCGTGGGCGCGACCGTGAT CGCGATCACCGCGGCGACGGACGCGGAGACGGCCGCGGCGGCGACGACGG CGGCGGCGGGCGCAAGCGGGGCCGCAGTTGGGAGCGGGAACAGCTGGAAG CGGAGCGGCGTCAGCGGCTCGAAACAGAAGAAGCGGAGCGGAAGCGACTG CGCCGGCTGGAAGTGCTAGCGTCACTCGGGGAGACCAAGGACACATCAGC GCTTGCGAGAGCTGCCGCCGTGGCAAGAGAGGCGGGCGGCGGCGCGGCGG CGGCGTCAATGCCTGGGACTGCCGGGGCGGCGGTGGCAGGGGGCGATGCA CAGACGGCATCAGCGGCGGCCGCGGCGAAGCCGGCGGCGCTGGAAGTGGC GGCGGCTTCAGCAGCTGGCGCGGCGATGGCCGTACGAAGCGACGCATGCG TCAGAGCATACGCGGACGCGGCCACTCCAGCTGCTTCTGCTGCTGCGGCG GCGGCGGCTCCGGCGGCGCCGGCGGGTCTGCGGGACGAGAGGAAGGACCG GGAGCGGCACCTGGTGGATGCCATCCCGAAGGATAAGGAGGCACTTTTCG CCTACCCTGTTGACTGGGCCGCCGTCGAGCGCTTCGACATCGTCAACGGC AAGATGCGGCCCTGGGTCGTCAAGAAGGTGAGGTGTGAGGTGCTTGGTGG CACGAGGAAACGGAGCATGCCCACTGCAGATCAACTTTTTTGCGTTACCT CTGCTGTGATGTGGGTACAAATGGAGTTGACCGCGGATCCATCTTCCACC ACTTCACAGATCCGCCTTTCTGTGCGCTCGCTGTATTGCTGCCGTGCGCC GTCCACCGCTGCCGCCGCCGCCGCCATCATGTCCCGGCAGATCATCGAGT ACCTGGGGGAGGAGGAGACGACGCTGATTCAGTTTGTCGTGTCGAAGCTC CGGCTGCGCTCGCCACCTGCCGCCATCCTCGAGGAGCTTAAGCTGGTGCT GGAGGAGGACGCCGATGTCTTCATCGCCAAGATGTGGCGCATGCTCATCT TCTGCGTGCTTAAGGCTGTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1926:4896..6065-

>mRNA_P-wetherbeei_contig1926.4.1 ID=mRNA_P-wetherbeei_contig1926.4.1|Name=mRNA_P-wetherbeei_contig1926.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=957bp|location=Sequence derived from alignment at P-wetherbeei_contig1926:4896..6065- (Phaeothamnion wetherbeei SAG_119_79)
AAGGACCGAGACCGGGATCGGGATCGGGACCACCGGAATAGTCGTCGCAA
TGGAGAGCGAGGAAGCCAACGCGACCGCGGCGCTGGCGCTGGAGATTACG
GCGATTACGGAGACTACGGTGACTACGGCGACCGTGGGCGCGACCGTGAT
CGCGATCACCGCGGCGACGGACGCGGAGACGGCCGCGGCGGCGACGACGG
CGGCGGCGGGCGCAAGCGGGGCCGCAGTTGGGAGCGGGAACAGCTGGAAG
CGGAGCGGCGTCAGCGGCTCGAAACAGAAGAAGCGGAGCGGAAGCGACTG
CGCCGGCTGGAAGTGCTAGCGTCACTCGGGGAGACCAAGGACACATCAGC
GCTTGCGAGAGCTGCCGCCGTGGCAAGAGAGGCGGGCGGCGGCGCGGCGG
CGGCGTCAATGCCTGGGACTGCCGGGGCGGCGGTGGCAGGGGGCGATGCA
CAGACGGCATCAGCGGCGGCCGCGGCGAAGCCGGCGGCGCTGGAAGTGGC
GGCGGCTTCAGCAGCTGGCGCGGCGATGGCCGTACGAAGCGACGCATGCG
TCAGAGCATACGCGGACGCGGCCACTCCAGCTGCTTCTGCTGCTGCGGCG
GCGGCGGCTCCGGCGGCGCCGGCGGGTCTGCGGGACGAGAGGAAGGACCG
GGAGCGGCACCTGGTGGATGCCATCCCGAAGGATAAGGAGGCACTTTTCG
CCTACCCTGTTGACTGGGCCGCCGTCGAGCGCTTCGACATCGTCAACGGC
AAGATGCGGCCCTGGGTCGTCAAGAAGATCATCGAGTACCTGGGGGAGGA
GGAGACGACGCTGATTCAGTTTGTCGTGTCGAAGCTCCGGCTGCGCTCGC
CACCTGCCGCCATCCTCGAGGAGCTTAAGCTGGTGCTGGAGGAGGACGCC
GATGTCTTCATCGCCAAGATGTGGCGCATGCTCATCTTCTGCGTGCTTAA
GGCTGTA
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