mRNA_P-wetherbeei_contig19232.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19232.1.1
Unique NamemRNA_P-wetherbeei_contig19232.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19232.1.1 vs. uniprot
Match: A0A2W2CA59_9HYPH (50S ribosomal protein L17 n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2CA59_9HYPH)

HSP 1 Score: 219 bits (559), Expect = 1.800e-71
Identity = 112/142 (78.87%), Postives = 125/142 (88.03%), Query Frame = 1
Query:    1 MRHGFRGRRFNRTVPHRLAMFANMSAALIKHEQIVTTLPKAKDLRPVIEKLITLAKKGGLHARRQAMSQVRDETQVKKLFDILAARFKDRQGGYARIMKAGFRFGDNAPMAVIEFVDRDPSEKGKDSGPSMKTGEETKEAVA 426
            MRHGFRGRRFNRT  HR AMFANM+AALIKHEQIVTTLPKAKDLRPV+EKL+TL K+GGLHARRQA++QVRDETQVKKLFD+LA R+  R GGY RIMKAGFR+GD APMAVIEFVDRD + +G DSGPS K GE++ EA A
Sbjct:    1 MRHGFRGRRFNRTAEHREAMFANMAAALIKHEQIVTTLPKAKDLRPVVEKLVTLGKQGGLHARRQALAQVRDETQVKKLFDVLAKRYGARSGGYLRIMKAGFRYGDQAPMAVIEFVDRDVNARGLDSGPSQK-GEDSAEAAA 141          
BLAST of mRNA_P-wetherbeei_contig19232.1.1 vs. uniprot
Match: UPI001E57B9FA (50S ribosomal protein L17 n=1 Tax=Microvirga sp. SM2 TaxID=2883126 RepID=UPI001E57B9FA)

HSP 1 Score: 215 bits (547), Expect = 1.180e-69
Identity = 105/131 (80.15%), Postives = 117/131 (89.31%), Query Frame = 1
Query:    1 MRHGFRGRRFNRTVPHRLAMFANMSAALIKHEQIVTTLPKAKDLRPVIEKLITLAKKGGLHARRQAMSQVRDETQVKKLFDILAARFKDRQGGYARIMKAGFRFGDNAPMAVIEFVDRDPSEKGKDSGPSM 393
            MRHGFRGRRFNRT  HR AMFANMSAAL+KHEQIVTTLPKAKDLRPV+EKLIT+AK+G LHARR AMS++RDE  VKKLFD+L  R+KDRQGGY RIMKAGFR+GDNAPMAVIEFVDRD   +G+DSGP+ 
Sbjct:    1 MRHGFRGRRFNRTAEHRKAMFANMSAALVKHEQIVTTLPKAKDLRPVVEKLITMAKRGDLHARRLAMSKLRDEAMVKKLFDVLGPRYKDRQGGYTRIMKAGFRYGDNAPMAVIEFVDRDVDARGQDSGPTQ 131          
BLAST of mRNA_P-wetherbeei_contig19232.1.1 vs. uniprot
Match: A0A4R7C7R7_9HYPH (50S ribosomal protein L17 n=1 Tax=Enterovirga rhinocerotis TaxID=1339210 RepID=A0A4R7C7R7_9HYPH)

HSP 1 Score: 214 bits (546), Expect = 1.670e-69
Identity = 111/142 (78.17%), Postives = 119/142 (83.80%), Query Frame = 1
Query:    1 MRHGFRGRRFNRTVPHRLAMFANMSAALIKHEQIVTTLPKAKDLRPVIEKLITLAKKGGLHARRQAMSQVRDETQVKKLFDILAARFKDRQGGYARIMKAGFRFGDNAPMAVIEFVDRDPSEKGKDSGPSMKTGEETKEAVA 426
            MRHGFRGRRFNR+  HR AMFANMSAALIKHEQIVTTLPKAKDLRPV+EKLITL K+G LHARR AMSQ+RDE  VKKLF +L  R+KDR GGY R+MKAGFR GDNAP+AVIEFVDRD   KGKDSGPS K   ET EA A
Sbjct:    1 MRHGFRGRRFNRSAEHRKAMFANMSAALIKHEQIVTTLPKAKDLRPVVEKLITLGKRGDLHARRNAMSQLRDEDMVKKLFAVLGPRYKDRSGGYCRVMKAGFRQGDNAPLAVIEFVDRDVDAKGKDSGPSQKV--ETDEAAA 140          
BLAST of mRNA_P-wetherbeei_contig19232.1.1 vs. uniprot
Match: UPI0003F50F4F (50S ribosomal protein L17 n=2 Tax=Salinarimonas TaxID=690086 RepID=UPI0003F50F4F)

HSP 1 Score: 213 bits (543), Expect = 4.630e-69
Identity = 103/135 (76.30%), Postives = 119/135 (88.15%), Query Frame = 1
Query:    1 MRHGFRGRRFNRTVPHRLAMFANMSAALIKHEQIVTTLPKAKDLRPVIEKLITLAKKGGLHARRQAMSQVRDETQVKKLFDILAARFKDRQGGYARIMKAGFRFGDNAPMAVIEFVDRDPSEKGKDSGPSMKTGE 405
            MRHGFRGRRFNRT  HR AMF N++ ALIKHEQIVTTLPKAKDLRPV+EKLITL K+G LHARRQA+++++DET VKKLFD+L  R+KDRQGGY R++KAGFR+GDNAPMAVIEFVDRDP  KG+DSGPS +  E
Sbjct:    1 MRHGFRGRRFNRTPEHRKAMFKNLAQALIKHEQIVTTLPKAKDLRPVVEKLITLGKRGDLHARRQAIARIQDETLVKKLFDVLGPRYKDRQGGYTRVLKAGFRYGDNAPMAVIEFVDRDPDAKGQDSGPSAEADE 135          
BLAST of mRNA_P-wetherbeei_contig19232.1.1 vs. uniprot
Match: A0A5N3P539_9HYPH (50S ribosomal protein L17 n=1 Tax=Microvirga brassicacearum TaxID=2580413 RepID=A0A5N3P539_9HYPH)

HSP 1 Score: 213 bits (543), Expect = 4.790e-69
Identity = 105/131 (80.15%), Postives = 116/131 (88.55%), Query Frame = 1
Query:    1 MRHGFRGRRFNRTVPHRLAMFANMSAALIKHEQIVTTLPKAKDLRPVIEKLITLAKKGGLHARRQAMSQVRDETQVKKLFDILAARFKDRQGGYARIMKAGFRFGDNAPMAVIEFVDRDPSEKGKDSGPSM 393
            MRHGFRGRR NRT  HR AMFANM+AALIKHEQIVTTLPKAKDLRP++EK+ITL K+G LHARRQAMSQ+RDE  VKKLF +L  R++DRQGGY RIMKAGFR+GDNAPMAVIEFVDRD S +GKDSGPS 
Sbjct:    1 MRHGFRGRRLNRTTEHRKAMFANMAAALIKHEQIVTTLPKAKDLRPIVEKIITLGKRGDLHARRQAMSQLRDEDMVKKLFAVLGPRYQDRQGGYCRIMKAGFRYGDNAPMAVIEFVDRDVSARGKDSGPSQ 131          
BLAST of mRNA_P-wetherbeei_contig19232.1.1 vs. uniprot
Match: RL17_METNO (50S ribosomal protein L17 n=20 Tax=Methylobacterium TaxID=407 RepID=RL17_METNO)

HSP 1 Score: 213 bits (541), Expect = 9.650e-69
Identity = 104/140 (74.29%), Postives = 121/140 (86.43%), Query Frame = 1
Query:    1 MRHGFRGRRFNRTVPHRLAMFANMSAALIKHEQIVTTLPKAKDLRPVIEKLITLAKKGGLHARRQAMSQVRDETQVKKLFDILAARFKDRQGGYARIMKAGFRFGDNAPMAVIEFVDRDPSEKGKDSGPSMKTGEETKEA 420
            MRHGFRGRRFNRTV HR AMFANMSAALIKHEQI+TTLPKAKDLRPV+EKLITL K+G LHARRQA++Q+RDE  VKKLF++L  R++ R GGY RIMKAGFR+GDNAPMAVIEFVDRD + +G+DSGP+     +T+ A
Sbjct:    1 MRHGFRGRRFNRTVEHRKAMFANMSAALIKHEQIITTLPKAKDLRPVVEKLITLGKRGDLHARRQAIAQIRDEAMVKKLFEVLGPRYQTRPGGYCRIMKAGFRYGDNAPMAVIEFVDRDVNARGQDSGPTQAAASQTEAA 140          
BLAST of mRNA_P-wetherbeei_contig19232.1.1 vs. uniprot
Match: UPI000FFCA3FE (50S ribosomal protein L17 n=1 Tax=Methylobacterium crusticola TaxID=1697972 RepID=UPI000FFCA3FE)

HSP 1 Score: 212 bits (539), Expect = 1.880e-68
Identity = 104/131 (79.39%), Postives = 116/131 (88.55%), Query Frame = 1
Query:    1 MRHGFRGRRFNRTVPHRLAMFANMSAALIKHEQIVTTLPKAKDLRPVIEKLITLAKKGGLHARRQAMSQVRDETQVKKLFDILAARFKDRQGGYARIMKAGFRFGDNAPMAVIEFVDRDPSEKGKDSGPSM 393
            MRHGFRGRRFNRTV HR AMFANMSAALIKHEQI+TTLPKAKDLRPV+EKLITL K+G LHARRQA++Q+RDE  V+KLFD+L  R++ R GGY RIMKAGFR+GDNAPMAVIEFVDRD   +GKDSGPS 
Sbjct:    1 MRHGFRGRRFNRTVEHRKAMFANMSAALIKHEQIITTLPKAKDLRPVVEKLITLGKRGDLHARRQAIAQIRDEGMVRKLFDVLGPRYQARPGGYCRIMKAGFRYGDNAPMAVIEFVDRDVDARGKDSGPSQ 131          
BLAST of mRNA_P-wetherbeei_contig19232.1.1 vs. uniprot
Match: A0A849I629_9HYPH (50S ribosomal protein L17 n=1 Tax=Enterovirga sp. DB1703 TaxID=2730920 RepID=A0A849I629_9HYPH)

HSP 1 Score: 210 bits (535), Expect = 7.660e-68
Identity = 102/133 (76.69%), Postives = 117/133 (87.97%), Query Frame = 1
Query:    1 MRHGFRGRRFNRTVPHRLAMFANMSAALIKHEQIVTTLPKAKDLRPVIEKLITLAKKGGLHARRQAMSQVRDETQVKKLFDILAARFKDRQGGYARIMKAGFRFGDNAPMAVIEFVDRDPSEKGKDSGPSMKT 399
            MRHGFRGRRFNRT  HR AMFANMSAALIKHEQIVTTLPKAKDLRPV+EKL+TL K+GGLHARRQA++Q+RDE  V+KLFD+L  R++ R GGY R++KAGFR GDNAPMAVIEFVDRD   +G+DSGP+ KT
Sbjct:    1 MRHGFRGRRFNRTAEHRKAMFANMSAALIKHEQIVTTLPKAKDLRPVVEKLVTLGKRGGLHARRQAIAQLRDEAMVRKLFDVLGPRYQARPGGYTRVLKAGFRQGDNAPMAVIEFVDRDVDARGQDSGPTQKT 133          
BLAST of mRNA_P-wetherbeei_contig19232.1.1 vs. uniprot
Match: A0A1G5K603_9HYPH (50S ribosomal protein L17 n=3 Tax=Microvirga TaxID=186650 RepID=A0A1G5K603_9HYPH)

HSP 1 Score: 210 bits (535), Expect = 7.920e-68
Identity = 103/132 (78.03%), Postives = 116/132 (87.88%), Query Frame = 1
Query:    1 MRHGFRGRRFNRTVPHRLAMFANMSAALIKHEQIVTTLPKAKDLRPVIEKLITLAKKGGLHARRQAMSQVRDETQVKKLFDILAARFKDRQGGYARIMKAGFRFGDNAPMAVIEFVDRDPSEKGKDSGPSMK 396
            MRHGFRGRRFNRT  HR AMFANM+AALIKHEQIVTTLPKAKDLRPV+EKLITL K+G LHARRQAMSQ+RDE  VKKLF IL  R+++R GGY R++KAGFR+GDNAPMAVIEFVDRD   +G+DSGP+ K
Sbjct:    1 MRHGFRGRRFNRTTEHRKAMFANMAAALIKHEQIVTTLPKAKDLRPVVEKLITLGKRGDLHARRQAMSQLRDEAMVKKLFAILGPRYQERNGGYTRVLKAGFRYGDNAPMAVIEFVDRDVDARGQDSGPTQK 132          
BLAST of mRNA_P-wetherbeei_contig19232.1.1 vs. uniprot
Match: UPI00118686A7 (50S ribosomal protein L17 n=1 Tax=Rhodoligotrophos appendicifer TaxID=987056 RepID=UPI00118686A7)

HSP 1 Score: 210 bits (535), Expect = 7.920e-68
Identity = 106/143 (74.13%), Postives = 122/143 (85.31%), Query Frame = 1
Query:    1 MRHGFRGRRFNRTVPHRLAMFANMSAALIKHEQIVTTLPKAKDLRPVIEKLITLAKKGGLHARRQAMSQVRDETQVKKLFDILAARFKDRQGGYARIMKAGFRFGDNAPMAVIEFVDRDPSEKGKDSGPSMKTGEETKEAVAA 429
            MRHG  GR+ NRT  HR AMFANM+A+LIKHEQIVTTLPKAK+LRP++EKLITLAKKGGLH RRQA+SQ+RD TQV KLFD L AR++ RQGGY R++KAGFR+GDNAP+AVIEFVDRDP  KGKDSGP    G+ET+ A AA
Sbjct:    1 MRHGKSGRKLNRTASHRKAMFANMAASLIKHEQIVTTLPKAKELRPIVEKLITLAKKGGLHRRRQAISQIRDITQVGKLFDTLGARYEGRQGGYTRVLKAGFRYGDNAPLAVIEFVDRDPEAKGKDSGP---VGDETESAAAA 140          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19232.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2W2CA59_9HYPH1.800e-7178.8750S ribosomal protein L17 n=1 Tax=Aestuariivirga l... [more]
UPI001E57B9FA1.180e-6980.1550S ribosomal protein L17 n=1 Tax=Microvirga sp. S... [more]
A0A4R7C7R7_9HYPH1.670e-6978.1750S ribosomal protein L17 n=1 Tax=Enterovirga rhin... [more]
UPI0003F50F4F4.630e-6976.3050S ribosomal protein L17 n=2 Tax=Salinarimonas Ta... [more]
A0A5N3P539_9HYPH4.790e-6980.1550S ribosomal protein L17 n=1 Tax=Microvirga brass... [more]
RL17_METNO9.650e-6974.2950S ribosomal protein L17 n=20 Tax=Methylobacteriu... [more]
UPI000FFCA3FE1.880e-6879.3950S ribosomal protein L17 n=1 Tax=Methylobacterium... [more]
A0A849I629_9HYPH7.660e-6876.6950S ribosomal protein L17 n=1 Tax=Enterovirga sp. ... [more]
A0A1G5K603_9HYPH7.920e-6878.0350S ribosomal protein L17 n=3 Tax=Microvirga TaxID... [more]
UPI00118686A77.920e-6874.1350S ribosomal protein L17 n=1 Tax=Rhodoligotrophos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19232contigP-wetherbeei_contig19232:148..579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog460265.Mnod_1933
Preferred namerplQ
PFAMsRibosomal_L17
Model size432
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02879
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904
Exons1
Evalue1.58e-69
EggNOG OGsCOG0203@1|root,COG0203@2|Bacteria,1RCWN@1224|Proteobacteria,2U749@28211|Alphaproteobacteria,1JUM9@119045|Methylobacteriaceae
DescriptionPFAM ribosomal protein L17
Cds size432
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186167.366039-CDS-P-wetherbeei_contig19232:147..5791683186167.366039-CDS-P-wetherbeei_contig19232:147..579Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19232 148..579 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19232.1.1prot_P-wetherbeei_contig19232.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19232 148..579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19232.1.1

>prot_P-wetherbeei_contig19232.1.1 ID=prot_P-wetherbeei_contig19232.1.1|Name=mRNA_P-wetherbeei_contig19232.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=144bp
MRHGFRGRRFNRTVPHRLAMFANMSAALIKHEQIVTTLPKAKDLRPVIEK
LITLAKKGGLHARRQAMSQVRDETQVKKLFDILAARFKDRQGGYARIMKA
GFRFGDNAPMAVIEFVDRDPSEKGKDSGPSMKTGEETKEAVAA*
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mRNA from alignment at P-wetherbeei_contig19232:148..579+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19232.1.1 ID=mRNA_P-wetherbeei_contig19232.1.1|Name=mRNA_P-wetherbeei_contig19232.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig19232:148..579+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTCATGGTTTTAGAGGTCGTCGGTTCAACCGCACGGTTCCGCATCG TCTGGCGATGTTTGCCAACATGTCGGCGGCATTGATCAAGCATGAGCAGA TCGTCACCACCTTGCCAAAGGCCAAGGATTTGCGCCCGGTGATCGAGAAA CTGATCACGCTGGCCAAGAAGGGCGGACTGCATGCACGGCGCCAGGCGAT GAGCCAGGTGCGTGATGAAACGCAGGTGAAGAAACTGTTTGATATTCTTG CGGCTCGCTTCAAGGACCGCCAGGGCGGCTATGCCCGCATCATGAAGGCG GGTTTCCGCTTTGGCGACAACGCGCCGATGGCCGTCATCGAATTTGTGGA CCGTGACCCGTCCGAAAAGGGCAAGGATTCAGGCCCGTCGATGAAGACGG GTGAAGAGACCAAGGAAGCCGTAGCGGCTTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19232:148..579+

>mRNA_P-wetherbeei_contig19232.1.1 ID=mRNA_P-wetherbeei_contig19232.1.1|Name=mRNA_P-wetherbeei_contig19232.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig19232:148..579+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTCATGGTTTTAGAGGTCGTCGGTTCAACCGCACGGTTCCGCATCG
TCTGGCGATGTTTGCCAACATGTCGGCGGCATTGATCAAGCATGAGCAGA
TCGTCACCACCTTGCCAAAGGCCAAGGATTTGCGCCCGGTGATCGAGAAA
CTGATCACGCTGGCCAAGAAGGGCGGACTGCATGCACGGCGCCAGGCGAT
GAGCCAGGTGCGTGATGAAACGCAGGTGAAGAAACTGTTTGATATTCTTG
CGGCTCGCTTCAAGGACCGCCAGGGCGGCTATGCCCGCATCATGAAGGCG
GGTTTCCGCTTTGGCGACAACGCGCCGATGGCCGTCATCGAATTTGTGGA
CCGTGACCCGTCCGAAAAGGGCAAGGATTCAGGCCCGTCGATGAAGACGG
GTGAAGAGACCAAGGAAGCCGTAGCGGCTTAA
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