mRNA_P-wetherbeei_contig19225.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19225.1.1
Unique NamemRNA_P-wetherbeei_contig19225.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19225.1.1 vs. uniprot
Match: UPI00166310F2 (site-specific integrase n=1 Tax=Roseomonas lacus TaxID=287609 RepID=UPI00166310F2)

HSP 1 Score: 95.9 bits (237), Expect = 9.010e-18
Identity = 95/370 (25.68%), Postives = 152/370 (41.08%), Query Frame = 1 
Query:   10 WNEARENCVNWPSIKAECELKRLWYTPPLTDYPQRLRDQIDELIEAWLRGGPGTGSR--CGLSGESVNDTLDMLRRFLHGLCDEGGFQPSSIISLEVALATDHVRLGLNFHLKRQDGRLTPALYNMACLLRRILRFQLKAPKAQLAAVTELVGKLNPKHKNVPKSVI-ELFLKFKSTNLLSRLDGLGEQILRRYEWRRSTTIKEGIEIRCALAVELLLSTAEARNTLSAVWIGREAL--PGHGYIAGDCYKPARGRMRDPVPLYETAARLLELYNRLGRPR-RALASEWLFPGASAG-PMNADVLGRQMTQFVQRELNERLTPSQLRYAVGAIYLLSTPDKLADSDKLEDVRRLLGHVSIVNTRRAFKAL 1098
            WN A +    WP  +      RL ++PPLT YPQ LRD I+   E WL G     +R    L   S+   L  LR +L  L  E G  P+S++ L   +     R+ L    +R   + T   + MA L+ +I ++  K P+  +  +  ++ +L P H  + K     +    +  + L RL  L   ++ +         +     + A+  ++LL        L  + +G   +  PG            +  +R   PL +  A+ +E Y    RP      ++WLFPGA  G P   + L  Q+ +    +    LTP   R   G  YL    D+ A       V+R+LGH S+  T   +  L
Sbjct:  181 WNTAADLHPAWPQCRLGVPDHRLTFSPPLTAYPQTLRDHIERWRE-WLGGDDPFTNRPFSALRATSMATRLRQLRTYLGALI-ESGVDPASMVDLAGVVTPAMARVALRVLWERAGQKSTAHTFQMAALVLQIGKYWAKLPEPDVETLRNMMRQLRPAHTGMSKRTEGRVRAAVEDQDRLDRLLTLPGALMDKACRAGPPGQRLAQMAQTAILADILLHLPMRLKNLGGLRLGVHLIRGPGKSITVDIPAAETKNELRITGPLPKDVAKRMEAYIDRFRPLLNPGGTDWLFPGAVPGQPKTGEALRSQIRKAATTQCGLMLTPHDFRSLTG--YLTLRDDRGAHGK----VQRILGHKSLATTMAHYSGL 542
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19225.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00166310F29.010e-1825.68site-specific integrase n=1 Tax=Roseomonas lacus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19225contigP-wetherbeei_contig19225:102..1286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1185
Hectar predicted targeting categoryother localisation
Exons1
Cds size1185
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186167.097382-CDS-P-wetherbeei_contig19225:101..12861683186167.097382-CDS-P-wetherbeei_contig19225:101..1286Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19225 102..1286 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19225.1.1prot_P-wetherbeei_contig19225.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19225 102..1286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19225.1.1

>prot_P-wetherbeei_contig19225.1.1 ID=prot_P-wetherbeei_contig19225.1.1|Name=mRNA_P-wetherbeei_contig19225.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=395bp
CGAWNEARENCVNWPSIKAECELKRLWYTPPLTDYPQRLRDQIDELIEAW
LRGGPGTGSRCGLSGESVNDTLDMLRRFLHGLCDEGGFQPSSIISLEVAL
ATDHVRLGLNFHLKRQDGRLTPALYNMACLLRRILRFQLKAPKAQLAAVT
ELVGKLNPKHKNVPKSVIELFLKFKSTNLLSRLDGLGEQILRRYEWRRST
TIKEGIEIRCALAVELLLSTAEARNTLSAVWIGREALPGHGYIAGDCYKP
ARGRMRDPVPLYETAARLLELYNRLGRPRRALASEWLFPGASAGPMNADV
LGRQMTQFVQRELNERLTPSQLRYAVGAIYLLSTPDKLADSDKLEDVRRL
LGHVSIVNTRRAFKALLQAASFEGFDRRMAARQGRVYGGGAAHV*
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mRNA from alignment at P-wetherbeei_contig19225:102..1286-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19225.1.1 ID=mRNA_P-wetherbeei_contig19225.1.1|Name=mRNA_P-wetherbeei_contig19225.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1185bp|location=Sequence derived from alignment at P-wetherbeei_contig19225:102..1286- (Phaeothamnion wetherbeei SAG_119_79)
TGCGGCGCCTGGAACGAGGCCCGTGAGAATTGTGTCAACTGGCCGTCGAT
AAAGGCCGAGTGCGAGCTTAAGCGGCTGTGGTACACGCCCCCGCTTACCG
ACTATCCACAGCGGCTTCGCGACCAGATCGACGAGCTCATCGAGGCTTGG
CTGCGTGGCGGTCCTGGCACAGGCAGTCGCTGCGGACTCTCTGGTGAGTC
CGTGAACGACACCCTCGATATGCTGCGGCGCTTTCTGCACGGCCTTTGCG
ATGAAGGCGGATTTCAGCCGTCTAGCATCATTTCCCTCGAGGTGGCGCTC
GCAACAGATCATGTTCGCCTGGGACTGAACTTCCACCTCAAGCGTCAGGA
CGGCCGATTGACGCCGGCGCTCTACAACATGGCTTGTCTGCTGCGCAGGA
TCCTGCGCTTCCAACTTAAGGCTCCGAAGGCACAGCTTGCGGCGGTCACA
GAATTAGTCGGCAAACTAAATCCAAAACACAAGAATGTTCCAAAGTCAGT
GATCGAATTGTTCCTGAAGTTCAAGAGCACTAACCTGCTCTCCCGTCTCG
ATGGGCTCGGCGAGCAGATCCTGCGTCGATACGAGTGGCGTCGGAGTACC
ACCATTAAAGAAGGGATTGAAATCCGCTGCGCGCTCGCCGTCGAGCTCCT
GTTGTCGACGGCAGAGGCGCGGAATACATTGTCCGCCGTATGGATCGGTC
GCGAGGCGCTGCCAGGACATGGTTACATCGCCGGTGATTGCTACAAACCC
GCGAGGGGACGGATGCGAGATCCTGTGCCCTTGTATGAGACGGCGGCTCG
GCTTCTGGAACTCTACAACCGGTTGGGGCGACCACGTCGCGCGCTAGCAT
CGGAATGGCTTTTCCCGGGTGCGTCAGCCGGCCCGATGAACGCCGACGTA
CTGGGGCGCCAGATGACCCAATTCGTCCAGCGGGAACTCAATGAGCGCCT
TACGCCGAGCCAGCTGCGATATGCAGTCGGTGCGATCTACCTGCTGTCTA
CCCCCGACAAGCTCGCCGATTCGGACAAGCTCGAGGATGTGCGCAGATTG
CTGGGGCATGTTTCGATCGTGAACACCCGCCGTGCATTCAAGGCTCTGCT
GCAGGCCGCAAGCTTCGAGGGCTTCGACCGCCGTATGGCCGCACGCCAAG
GCCGTGTTTATGGTGGGGGAGCGGCACATGTTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19225:102..1286-

>mRNA_P-wetherbeei_contig19225.1.1 ID=mRNA_P-wetherbeei_contig19225.1.1|Name=mRNA_P-wetherbeei_contig19225.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1185bp|location=Sequence derived from alignment at P-wetherbeei_contig19225:102..1286- (Phaeothamnion wetherbeei SAG_119_79)
TGCGGCGCCTGGAACGAGGCCCGTGAGAATTGTGTCAACTGGCCGTCGAT
AAAGGCCGAGTGCGAGCTTAAGCGGCTGTGGTACACGCCCCCGCTTACCG
ACTATCCACAGCGGCTTCGCGACCAGATCGACGAGCTCATCGAGGCTTGG
CTGCGTGGCGGTCCTGGCACAGGCAGTCGCTGCGGACTCTCTGGTGAGTC
CGTGAACGACACCCTCGATATGCTGCGGCGCTTTCTGCACGGCCTTTGCG
ATGAAGGCGGATTTCAGCCGTCTAGCATCATTTCCCTCGAGGTGGCGCTC
GCAACAGATCATGTTCGCCTGGGACTGAACTTCCACCTCAAGCGTCAGGA
CGGCCGATTGACGCCGGCGCTCTACAACATGGCTTGTCTGCTGCGCAGGA
TCCTGCGCTTCCAACTTAAGGCTCCGAAGGCACAGCTTGCGGCGGTCACA
GAATTAGTCGGCAAACTAAATCCAAAACACAAGAATGTTCCAAAGTCAGT
GATCGAATTGTTCCTGAAGTTCAAGAGCACTAACCTGCTCTCCCGTCTCG
ATGGGCTCGGCGAGCAGATCCTGCGTCGATACGAGTGGCGTCGGAGTACC
ACCATTAAAGAAGGGATTGAAATCCGCTGCGCGCTCGCCGTCGAGCTCCT
GTTGTCGACGGCAGAGGCGCGGAATACATTGTCCGCCGTATGGATCGGTC
GCGAGGCGCTGCCAGGACATGGTTACATCGCCGGTGATTGCTACAAACCC
GCGAGGGGACGGATGCGAGATCCTGTGCCCTTGTATGAGACGGCGGCTCG
GCTTCTGGAACTCTACAACCGGTTGGGGCGACCACGTCGCGCGCTAGCAT
CGGAATGGCTTTTCCCGGGTGCGTCAGCCGGCCCGATGAACGCCGACGTA
CTGGGGCGCCAGATGACCCAATTCGTCCAGCGGGAACTCAATGAGCGCCT
TACGCCGAGCCAGCTGCGATATGCAGTCGGTGCGATCTACCTGCTGTCTA
CCCCCGACAAGCTCGCCGATTCGGACAAGCTCGAGGATGTGCGCAGATTG
CTGGGGCATGTTTCGATCGTGAACACCCGCCGTGCATTCAAGGCTCTGCT
GCAGGCCGCAAGCTTCGAGGGCTTCGACCGCCGTATGGCCGCACGCCAAG
GCCGTGTTTATGGTGGGGGAGCGGCACATGTTTGA
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