mRNA_P-wetherbeei_contig192.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig192.5.1
Unique NamemRNA_P-wetherbeei_contig192.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig192.5.1 vs. uniprot
Match: A0A7S2QUS9_9STRA (Hypothetical protein n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QUS9_9STRA)

HSP 1 Score: 345 bits (886), Expect = 4.360e-98
Identity = 211/637 (33.12%), Postives = 298/637 (46.78%), Query Frame = 3
Query:  132 ELSWLKL----SPGSDGRAPTPRSGHTMTTVGQNIFVFGGMAVKAPGTEKPAEEAVASRPRSAFFIDQSLTQDGGGDGGQPLLFGEGTLGAQPVPSDELWLLKLGSRGSEWRECVKKPRSALQRRDPGNGRLASANGALSTVQWPCPRWGHTATDLGDSRILVIGGFASSKLRLGDAWAYRTIARSWDRVWPPXXXXXXTVDSGTTSRGKTASLARGLALVSVSSSSGCFATSAAAFTTSGAVASRGNGDWSPEDAAGGGVAAAASPSPRGGHCAVLIGGRVWLFGGYGGWDYRRQDLDDLWTLTAGGGGTEGGDDGARWMFMSARGPAPAPRSGHGAVAADGIMLVFGGRSSLREYEDLSALDTNQEPPVWSCCAASPGAGGGGFMSVPRWGAACCAVQTTAGWKAFVFGGLGGSASEDNRQGTPLNDLLVLEPDSRRWRAPPEVGGVPPLPRSDAAITYHDGKGILLLFGGWANGWLDDLFSLPVGPLVGPAYSLLAVSPERGAVTGGAALELSGDGFAPTDDVVVRFGVRGKHVDVQGVFISRTKISCTVPDLLAAGLPPGEIEMRASLAGGGFTVVAVIFTAFPVTVSSMCFVYGPGVLEGGCSGRETVFIIQARDADGQNRQFGGDEFDIVI 2030
            +L+W K         +   P+PRSGH+ T  G N ++FGG+                                             G + + P PS++L+LL++GS   E+        +AL    PG                P PRW HTA+ +  ++IL+ GGFASS  R  D W + T+   W   W P       VD    + G                                         W              +PSPRG H + LIG  V++FGGYGG  Y R+DLDDL  L           +  +W  ++ +G  P  RSGH A A D  + VFGG +S ++++D+  LDT  +PP WS  ++         M    W  A C V     WK FVFGG+GG  SE N  GT  N +++L+  S RW  P ++ G  P  R+D  +TY      L++FGGWAN W +D++ L VG +VGP Y+++ + P+ G +TG   +E++G  F  T DVVVRF  +  +VDV+GV+ S+TKI+C  PD      PPG++E+R +L    FT     F+ F VT ++   +YGPG+L G     ET+FIIQARD + QNR  GGDEF + I
Sbjct:   14 KLAWKKAVVVGKNKKESNLPSPRSGHSFTVCGANAYLFGGL---------------------------------------------GEVNSPPAPSNDLFLLRMGSAEMEF--------TALDL--PGTK--------------PPPRWRHTASLIDQNQILLFGGFASSTQRYNDVWVFNTVTMEW---WQPVPKSSECVDGNHMASG-----------------------------------------WP------------GTPSPRGAHTSTLIGKNVYVFGGYGGMGYGRRDLDDLHMLNI---------ETWKWSKITPKGKGPEKRSGHQATACDSFLYVFGGWNSAKQFDDMFILDTAADPPTWSKVSSK--------MPAAVWNHAGCGVMAIPSWKIFVFGGVGGELSEINSLGTHSNSIMMLDTGSERWSIP-KINGELPAARADTTLTYDSKGSKLIIFGGWANEWYNDVYMLDVGSVVGPPYAIMDIYPKLGPITGNTPIEITGIDFVNTADVVVRFATKKAYVDVKGVYSSQTKITCVSPD--CTRFPPGQVEVRVALNNDSFTTTFQPFSLFAVTDAAKSLMYGPGILSGCAVNEETMFIIQARDENNQNRTSGGDEFVVTI 505          
BLAST of mRNA_P-wetherbeei_contig192.5.1 vs. uniprot
Match: D7FW50_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW50_ECTSI)

HSP 1 Score: 341 bits (875), Expect = 1.220e-96
Identity = 166/370 (44.86%), Postives = 229/370 (61.89%), Query Frame = 3
Query:  921 SPRGGHCAVLIGGRVWLFGGYGGWDYRRQDLDDLWTLTAGGGGTEGGDDGARWMFMSARGPAPAPRSGHGAVAADGIMLVFGGRSSLREYEDLSALDTNQEPPVWSCCAASPGAGGGGFMSVPRWGAACCAVQTTAGWKAFVFGGLGGSASEDNRQGTPLNDLLVLEPDSRRWRAPPEVGGVPPLPRSDAAITYHDGKGILLLFGGWANGWLDDLFSLPVGPLVGPAYSLLAVSPERGAVTGGAALELSGDGFAPTDDVVVRFGVRGKHVDVQGVFISRTKISCTVPDLLAAGLPPGEIEMRASLAGGGFTVVAVIFTAFPVTVSSMCFVYGPGVLEGGCSGRETVFIIQARDADGQNRQFGGDEFDIVI 2030
            S RGGH A  +G  +W++GGYGG  Y R+DL+D+ TL           +   W  +S +G  P  RS H A A DG M V GGRS+  E++D+ ALDT  +PPVW            G M VPRW  A  AVQ+   WK FVFGG+GG  ++ NRQGT +ND+ + +  + RW  P ++ G PPLPR D  + Y+   G L+L+GGWAN W  D F+L VG +VGP Y+++ + P+ G +TG   L++ G  F  T+DV +RF  R   +DV+G F+S+T+++C+ P+    G+PPG +++R  LAG  FT     FT FPVT ++  F+YGP +LE G  GRET+FIIQARD    +RQFGGD+FD+ I
Sbjct:  129 SSRGGHSACFMGSHLWVYGGYGGTLYSRKDLEDVCTLNL---------ETWTWTKVSPKGRGPGRRSEHSAAAVDGTMFVIGGRSTTTEFKDMYALDTEADPPVWVEVEQ-------GGMDVPRWSHAMYAVQSVPNWKIFVFGGVGGEITDTNRQGTFMNDVSIFDTGTERWIFP-DIQGDPPLPRGDMQLEYYQQGGKLILYGGWANRWFSDGFTLDVGSIVGPPYAVMDIIPDNGPITGETLLDIHGIDFINTEDVKIRFSYRKLFIDVRGTFVSQTRLTCSTPNFTNTGIPPGTVDVRVCLAGESFTTTKAKFTFFPVTDANFSFMYGPSLLEEGVPGRETMFIIQARDGSNHDRQFGGDQFDVNI 481          
BLAST of mRNA_P-wetherbeei_contig192.5.1 vs. uniprot
Match: A0A5D6XMM7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XMM7_9STRA)

HSP 1 Score: 313 bits (803), Expect = 3.150e-87
Identity = 224/656 (34.15%), Postives = 290/656 (44.21%), Query Frame = 3
Query:  135 LSWLKLSP-----GSDGRAPTPRSGHTMTTVGQNIFVFGGMAVKAPGTEKPAEEAVASRPRSAFFIDQSLTQDGGGDGGQPLLFGEGTLGAQPVPSDELWLLKLGSRGS-EWRECVKKPRSALQRRDPGNGRLASANGALSTVQWPCPRWGHTATDLGDSRILVIGGFASSKLRLGDAWAYRTIARSWDRVWPPXXXXXXTVDSGTTSRGKTASLARGLALVSVSSSSGCFATSAAAFTTSGAVASRGNGDWSPEDAAGGGVAAAASPSPRGGHCAVLIGGRVWLFGGYGGWDYRRQDLDDLWTLTAGGGGTEGGDDGARWMFMSARGPAPAPRSGHGAVAADGIMLVFGGRSSLREYEDLSALDTNQEPPVWSCCAASPGAGGGGFMSVPRWGAACCAVQTTAGWKAFVFGGLGGSASEDNRQGTPLNDLLVLEPDSRRWRAPPEVGGVPPLPRSDAAITYHDGKGILLLFGGWANGWLDDLFSLPVGPLVGPAYSLLAVSPERGAVTGGAALELSGDGFAPTDDVVVRFGVRGKHVDVQGVFISRTKISCTVPDLLAAGLPPGEIEMRASLAGGGFTVVAVIFTAFPVTVSSMCFVYGPGVLEGGCSGRETVFIIQARDADGQNRQFGGDEFDIVIRPASARSERGSDNDGGGP 2084
            L W K+          G  PT RSGH+++ VG N F+FGG   + P                                              P P+++L++L++G++   EW +    P +A                       P PRW H+AT + D ++ + GGF SS  RL D W +  I   W +   P       V  G  S               +S++     TS AA   S AV                       P+PRGGH AV I   +++FGGYGG  Y R+D DDL  L           D A W  ++++G AP  R+GH A A D +M+V GG +S+ ++ DL   DT      W+       A       +PRW  A CAV      K F FGG+ G     N QGT  ND+ VL+     W +P EV G PP  RSD  + Y D    LLLFGGWAN WL+DL+ L V  +VGP Y +  V P  G  TGG AL L G  F     V VRF  R   VDV G F+    +  T PD  A   PPG++++R +L G  FT     F  F VT +S+CF YGPGVL GG SG  T FIIQARDA    R  GGD F + +  A+          GGGP
Sbjct:   37 LRWTKVETVAARGSGGGDVPTRRSGHSLSVVGSNGFLFGGCDHREP----------------------------------------------PGPTNDLFVLRIGAQAPWEWEKLRSPPGTA-----------------------PPPRWKHSATVV-DGKVFIFGGFQSSTARLNDLWVFNPITMDWSQ---PADKSGAGVAPGAAS---------------LSAAGAPHRTSVAATRASSAVV----------------------PAPRGGHSAVAIRKCIYVFGGYGGAGYGRRDFDDLHVLRC---------DDASWSKVASKGRAPEKRAGHQACAVDDVMVVCGGWNSVAQFNDLHVFDTRTG--AWAAVEGPQMA-----TPLPRWNHAACAVAAIPHAKVFTFGGVLGEPGNYNGQGTFANDIAVLDSGDMSWTSP-EVRGAPPCGRSDTTLAYDDKGSRLLLFGGWANAWLNDLYCLDVSCVVGPPYGVTGVFPAFGPSTGGTALVLDGIDFV-NKPVTVRFACRQGAVDVPGEFVDDHTLHVTTPDFTA--FPPGDVQVRIALLGDSFTTTFQTFAFFAVTHASLCFAYGPGVLCGGASGEPTSFIIQARDAARGLRTRGGDVFTVEVVAAA----------GGGP 552          
BLAST of mRNA_P-wetherbeei_contig192.5.1 vs. uniprot
Match: G4Z963_PHYSP (Uncharacterized protein n=16 Tax=Phytophthora TaxID=4783 RepID=G4Z963_PHYSP)

HSP 1 Score: 293 bits (749), Expect = 3.470e-80
Identity = 176/494 (35.63%), Postives = 242/494 (48.99%), Query Frame = 3
Query:  549 WPCPRWGHTATDLGDSRILVIGGFASSKLRLGDAWAYRTIARSWDRVWPPXXXXXXTVDSGTTSRGKTASLARGLALVSVSSSSGCFATSAAAFTTSGAVASRGNGDWSPEDAAGGGVAAAASPSPRGGHCAVLIGGRVWLFGGYGGWDYRRQDLDDLWTLTAGGGGTEGGDDGARWMFMSARGPAPAPRSGHGAVAADGIMLVFGGRSSLREYEDLSALDTNQEPPVWSCCAASPGAGGGGFMSVPRWGAACCAVQTTAGWKAFVFGGLGGSASEDNRQGTPLNDLLVLEPDSRRWRAPPEVGGVPPLPRSDAAITYHDGKGILLLFGGWANGWLDDLFSLPVGPLVGPAYSLLAVSPERGAVTGGAALELSGDGFAPTDDVVVRFGVRGKHVDVQGVFISRTKISCTVPDLLAAGLPPGEIEMRASLAGGGFTVVAVIFTAFPVTVSSMCFVYGPGVLEGGCSGRETVFIIQARDADGQNRQFGGDEFDIVI 2030
            WP PRW H+AT + D++I V GGF SS  R  D W +  I   W +           ++S   +    AS+A+                                              A   P+PRG H AV I   +++FGGYGG  Y R+D DDL+ L           D   W  ++ +G  P  R+GH A A D +MLV GG +S+ ++ DL   D+      W+    +  A      ++PRW  ACCAV      K FVFGG+ G A+  N QG  +NDL VL+     W  P E+ G PP  RSD  ++Y D    L++FGGWAN WL+D+F L V  +VGP Y +  + P+ G +TGG +L + G  F     V +RF  R   VDV G +++   ++   PD  A   P G++++R +L G  FT     ++ F VT + +CF YGPGVL GG SG  T FIIQARDA    R  GGDEF + +
Sbjct:   91 WPPPRWKHSATVV-DNKIYVFGGFHSSSTRFNDLWVFNPITLDWSQQGAAAAVASP-LNSNNANAMHRASVAK--------------------------------------------TVAPTLPAPRGAHTAVAIRRSIYVFGGYGGTGYGRRDFDDLYMLRT---------DDLSWTKVTCKGKPPEKRAGHQACAVDDLMLVCGGWNSVAQFNDLHIFDSTVNS--WTLVEGTHMA-----TTLPRWNHACCAVLAIPHAKVFVFGGVVGEANNYNAQGGYMNDLSVLDTGEMSWTIP-EIEGTPPCGRSDTTLSYDDKGSRLIVFGGWANVWLNDMFYLDVSCVVGPPYGITGIFPDFGPITGGTSLVIEGIDFV-NKPVTIRFSCRKGSVDVPGEYVNDHTLNVVTPDFTA--FPAGDVQVRVALQGDSFTTTFQTYSYFSVTHAPLCFAYGPGVLSGGASGEPTCFIIQARDAQRNLRTRGGDEFIVEV 518          
BLAST of mRNA_P-wetherbeei_contig192.5.1 vs. uniprot
Match: A0A482SZA8_9ARCH (IPT/TIG domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SZA8_9ARCH)

HSP 1 Score: 282 bits (721), Expect = 1.530e-77
Identity = 148/371 (39.89%), Postives = 209/371 (56.33%), Query Frame = 3
Query:  918 PSPRGGHCAVLIGGRVWLFGGYGGWDYRRQDLDDLWTLTAGGGGTEGGDDGARWMFMSARGPAPAPRSGHGAVAADGIMLVFGGRSSLREYEDLSALDTNQEPPVWSCCAASPGAGGGGFMSVPRWGAACCAVQTTAGWKAFVFGGLGGSASEDNRQGTPLNDLLVLEPDSRRWRAPPEVGGVPPLPRSDAAITYHDGKGILLLFGGWANGWLDDLFSLPVGPLVGPAYSLLAVSPERGAVTGGAALELSGDGFAPTDDVVVRFGVRGKHVDVQGVFISRTKISCTVPDLLAAGLPPGEIEMRASLAGGGFTVVAVIFTAFPVTVSSMCFVYGPGVLEGGCSGRETVFIIQARDADGQNRQFGGDEFDIVI 2030
            P PR GH A L+G  +++FGGYGG  Y R+DLDDL  L               W  ++ +G AP  RSGH AVA +  + +FGG ++  +++D+  LD   E P+WS  A +        +  P W    C+V     WK F FGG+ G+ ++++R G  ++   +L+    RW+ P   G VP   RSD +++Y      LL+FGGWA+ WL D +SL VG +VGP Y++  + P  G VTGG  + + G  F  T ++VVRFG     +DV GVF+S++KI C  P    +  PPGEI++R SL G  FT     F+ FPVT    C ++GPG+L G     E  F+IQARD + QNR  GGDEF ++I
Sbjct:  168 PPPRAGHSATLVGSNIYVFGGYGGLGYSRRDLDDLHALNI---------YSWTWSKVTPKGTAPEKRSGHQAVAVESKIYIFGGSNNTMQFQDIYVLDVEPEVPLWSKLATT--------LPSPTWNQGACSVIAIPTWKIFTFGGITGTLNDNDRMGKTVSTTAILDTGIGRWQYPKVEGDVPSA-RSDMSLSYDPKGSRLLMFGGWADEWLGDFYSLDVGNIVGPPYAITDMYPNMGPVTGGTEVTIIGIDFINTTNIVVRFGNIRSSIDVPGVFVSQSKIVCVSP---VSKFPPGEIDVRISLEGDSFTTTFQKFSYFPVTNFVNCVMFGPGLLSGCAINEEVSFMIQARDDNNQNRTTGGDEFAVMI 517          
BLAST of mRNA_P-wetherbeei_contig192.5.1 vs. uniprot
Match: A0A6A4FJ90_9STRA (IPT/TIG domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4FJ90_9STRA)

HSP 1 Score: 275 bits (702), Expect = 6.720e-77
Identity = 151/376 (40.16%), Postives = 205/376 (54.52%), Query Frame = 3
Query:  903 AAAASPSPRGGHCAVLIGGRVWLFGGYGGWDYRRQDLDDLWTLTAGGGGTEGGDDGARWMFMSARGPAPAPRSGHGAVAADGIMLVFGGRSSLREYEDLSALDTNQEPPVWSCCAASPGAGGGGFMSVPRWGAACCAVQTTAGWKAFVFGGLGGSASEDNRQGTPLNDLLVLEPDSRRWRAPPEVGGVPPLPRSDAAITYHDGKGILLLFGGWANGWLDDLFSLPVGPLVGPAYSLLAVSPERGAVTGGAALELSGDGFAPTDDVVVRFGVRGKHVDVQGVFISRTKISCTVPDLLAAGLPPGEIEMRASLAGGGFTVVAVIFTAFPVTVSSMCFVYGPGVLEGGCSGRETVFIIQARDADGQNRQFGGDEFDIVI 2030
            AA   P+PRG H AV I   +++FGGYGG  Y R+D DDL+ L           D   W  ++ +G  P  R+GH A A D +MLV GG +S+ ++ DL   D+      W+    +  A      ++PRW  ACCAV      K FVFGG+ G A+  N QG  +NDL VL+     W  P E+ G PP  RSD  + Y D    L++FGGWAN WL+D+F L V  +VGP Y +  + P  G +TGG +L + G  F     V++RF  R   VD+ G +++   ++   PD  A   P G+ ++R +L G  FT     ++ F VT + +CF YGPGVL GG SG  T FIIQARDA    R  GGDEF + +
Sbjct:  157 AALTLPAPRGAHTAVAIRRSIYVFGGYGGTGYGRRDFDDLYMLRT---------DDLSWTKVTCKGKPPEKRAGHQACAVDDLMLVCGGWNSVTQFNDLHIFDSTVNS--WTLVEGTHMA-----TTLPRWNHACCAVLAIPHAKVFVFGGVVGEANNYNAQGNYMNDLSVLDTGDMSWTIP-EIEGTPPCGRSDTTLAYDDKGSRLIVFGGWANVWLNDMFYLDVSCVVGPPYGITGIFPNFGPITGGTSLVIEGIDFV-NKPVIIRFSCRKGSVDIPGEYVNDHTLNVVTPDFTA--FPAGDAQVRVALQGDSFTTTFQTYSYFSVTHAPLCFAYGPGVLSGGASGEPTCFIIQARDAQRNLRTRGGDEFTVEV 512          
BLAST of mRNA_P-wetherbeei_contig192.5.1 vs. uniprot
Match: A0A421GTM9_9STRA (IPT/TIG domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GTM9_9STRA)

HSP 1 Score: 270 bits (691), Expect = 8.660e-76
Identity = 151/371 (40.70%), Postives = 202/371 (54.45%), Query Frame = 3
Query:  918 PSPRGGHCAVLIGGRVWLFGGYGGWDYRRQDLDDLWTLTAGGGGTEGGDDGARWMFMSARGPAPAPRSGHGAVAADGIMLVFGGRSSLREYEDLSALDTNQEPPVWSCCAASPGAGGGGFMSVPRWGAACCAVQTTAGWKAFVFGGLGGSASEDNRQGTPLNDLLVLEPDSRRWRAPPEVGGVPPLPRSDAAITYHDGKGILLLFGGWANGWLDDLFSLPVGPLVGPAYSLLAVSPERGAVTGGAALELSGDGFAPTDDVVVRFGVRGKHVDVQGVFISRTKISCTVPDLLAAGLPPGEIEMRASLAGGGFTVVAVIFTAFPVTVSSMCFVYGPGVLEGGCSGRETVFIIQARDADGQNRQFGGDEFDIVI 2030
            P+PRG H AV I   +++FGGYGG  Y R+D DDL+ L           D   W  ++ +G  P  R+GH A A D +ML+ GG +S+ ++ DL A D+      W+    +  A       +PRW  A CAV      K FVFGG+ G A+  N QG+ +NDL VL+     W  P E+ G PP  RSD  + Y D    L++FGGWAN WL+D+F L V  +VGP Y +  + P+ G +TGG  L + G  FA    V +RF  R   VDV G +++   I+   PD  A   P G++++R +L G  FT     +  F VT + +CF YGPGV  GG SG  T FIIQARDA    R  GGDEF + I
Sbjct:  158 PAPRGAHSAVAIRRAIYVFGGYGGTGYGRRDFDDLYMLRT---------DDLSWTKVTCKGKPPEKRAGHQACAVDDLMLICGGWNSVSQFNDLHAFDSLVNS--WTLVEGTHMA-----SELPRWNHASCAVLAIPHAKVFVFGGVVGEANNYNAQGSYMNDLSVLDTGEMIWSVP-EIEGTPPCGRSDTTLAYDDKGSRLIVFGGWANVWLNDMFYLDVSCVVGPPYGITGIYPDFGPITGGTLLVIEGIDFA-NKPVTIRFSCRKGSVDVLGEYVNDHTINVVTPDFTAC--PAGDVQVRVALQGDSFTTTFQTYNFFSVTHAPLCFAYGPGVQSGGASGEPTSFIIQARDAQHNLRTRGGDEFTVEI 508          
BLAST of mRNA_P-wetherbeei_contig192.5.1 vs. uniprot
Match: A0A329SG04_9STRA (Dynein alpha chain, flagellar outer arm n=15 Tax=Phytophthora TaxID=4783 RepID=A0A329SG04_9STRA)

HSP 1 Score: 274 bits (700), Expect = 7.870e-74
Identity = 149/371 (40.16%), Postives = 204/371 (54.99%), Query Frame = 3
Query:  918 PSPRGGHCAVLIGGRVWLFGGYGGWDYRRQDLDDLWTLTAGGGGTEGGDDGARWMFMSARGPAPAPRSGHGAVAADGIMLVFGGRSSLREYEDLSALDTNQEPPVWSCCAASPGAGGGGFMSVPRWGAACCAVQTTAGWKAFVFGGLGGSASEDNRQGTPLNDLLVLEPDSRRWRAPPEVGGVPPLPRSDAAITYHDGKGILLLFGGWANGWLDDLFSLPVGPLVGPAYSLLAVSPERGAVTGGAALELSGDGFAPTDDVVVRFGVRGKHVDVQGVFISRTKISCTVPDLLAAGLPPGEIEMRASLAGGGFTVVAVIFTAFPVTVSSMCFVYGPGVLEGGCSGRETVFIIQARDADGQNRQFGGDEFDIVI 2030
            P+PRG H AV I   +++FGGYGG  Y R+D DDL+ L           D   W  ++++G  P  R+GH A A D +MLV GG +S+ ++ DL   D+      W+    +  A      ++PRW  ACCAV      K FVFGG+ G A+  N QG+ +NDL VL+     W  P ++ G PP  RSD  + Y D    L++FGGWAN WL+D+F L V  +VGP Y +  + P+ G +TGG A+ + G  F     V +RF  R   VDV G +I+   ++   PD      P G++++R +L G  FT     +  F VT + +CF YGPGVL GG SG  T F+IQARDA    R  GGDEF + I
Sbjct:  158 PAPRGAHSAVAIRRNIYMFGGYGGTGYGRRDFDDLYMLRT---------DDLSWTKVTSKGKPPDKRAGHQACAVDDLMLVCGGWNSVAQFNDLHIFDSTVNS--WTLVEGTHMA-----TTLPRWNHACCAVLAIPHAKVFVFGGVVGEANNYNAQGSYMNDLSVLDTGEMSWSIP-DIEGTPPCGRSDTTLAYDDKGSRLIVFGGWANVWLNDIFYLDVSCVVGPPYGITGIFPDFGPITGGTAVVIEGIDFV-NKPVTIRFSCRKGSVDVPGEYINDHTLNVVAPDYTV--YPAGDVQVRVALQGDSFTTTFQTYNYFSVTHAPLCFAYGPGVLSGGASGEPTCFVIQARDAQRNLRMRGGDEFTVEI 508          
BLAST of mRNA_P-wetherbeei_contig192.5.1 vs. uniprot
Match: A0A8K1C5R7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5R7_PYTOL)

HSP 1 Score: 273 bits (697), Expect = 1.920e-73
Identity = 156/379 (41.16%), Postives = 210/379 (55.41%), Query Frame = 3
Query:  906 AAASPSPRGGHCAVLIGGRVWLFGGYGGWDYRRQDLDDLWTLTAGGGGTEGGDDGARWMFMSARGPAPAPRSGHGAVAADGIMLVFGGRSSLREYEDLSALDTNQEPPVWSCC----AASPGAGGGGFMSVPRWGAACCAVQTTAGWKAFVFGGLGGSASEDNRQGTPLNDLLVLEPDSRRWRAPPEVGGVPPLPRSDAAITYHDGKGILLLFGGWANGWLDDLFSLPVGPLVGPAYSLLAVSPERGAVTGGAALELSGDGFAPTDDVVVRFGVRGKHVDVQGVFISRTKISCTVPDLLAAGLPPGEIEMRASLAGGGFTVVAVIFTAFPVTVSSMCFVYGPGVLEGGCSGRETVFIIQARDADGQNRQFGGDEFDIVI 2030
            AA +P+PRGGH AVLI   +++FGGYGG  Y R+D DDL+ L          +D + W  ++++G  P  R+GH A   D +MLV GG +S+ ++ DL   DT      W+       ASP         +PRW  ACCAV      K F+FGG+ G A+  N QGT +ND+ VL+     W  P E+ G PP  R+D  + Y D    LL+FGGWAN WL+DL++L V  +VGP Y + +V P+ G +TGG  L + G  F     V VRF      V+  G +++   ++   PD  A   P G++++R +L G  FT     F  F VT ++ CF YGPGVL GG SG  T FIIQARDA    R  GGDEF + I
Sbjct:  149 AAVAPAPRGGHSAVLIRKCLYVFGGYGGTGYGRRDFDDLYMLRV--------EDNS-WTKVTSKGRPPEKRAGHQACGVDDLMLVCGGWNSVVQFNDLHVFDTTTSS--WTSVDGPHMASP---------LPRWNHACCAVLAIPHAKVFIFGGVLGEANNYNGQGTYMNDISVLDSGEMTWMVP-EIRGTPPCGRADTTLAYDDKGSRLLVFGGWANVWLNDLYALDVSCVVGPPYGITSVFPDYGPITGGTQLIIEGIDFV-NRPVTVRFTCHKGSVEATGEYVNDHTLNVITPDFSA--YPAGDVQVRVALQGDSFTTTFQTFHFFAVTYAATCFAYGPGVLHGGASGEPTSFIIQARDAFRSMRSHGGDEFQVEI 503          
BLAST of mRNA_P-wetherbeei_contig192.5.1 vs. uniprot
Match: A0A662XS64_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XS64_9STRA)

HSP 1 Score: 270 bits (691), Expect = 5.900e-73
Identity = 151/371 (40.70%), Postives = 203/371 (54.72%), Query Frame = 3
Query:  918 PSPRGGHCAVLIGGRVWLFGGYGGWDYRRQDLDDLWTLTAGGGGTEGGDDGARWMFMSARGPAPAPRSGHGAVAADGIMLVFGGRSSLREYEDLSALDTNQEPPVWSCCAASPGAGGGGFMSVPRWGAACCAVQTTAGWKAFVFGGLGGSASEDNRQGTPLNDLLVLEPDSRRWRAPPEVGGVPPLPRSDAAITYHDGKGILLLFGGWANGWLDDLFSLPVGPLVGPAYSLLAVSPERGAVTGGAALELSGDGFAPTDDVVVRFGVRGKHVDVQGVFISRTKISCTVPDLLAAGLPPGEIEMRASLAGGGFTVVAVIFTAFPVTVSSMCFVYGPGVLEGGCSGRETVFIIQARDADGQNRQFGGDEFDIVI 2030
            P+PRG H AV I   +++FGGYGG  Y R+D DDL+ L           D   W  ++ +G  P  R+GH A A D +MLV GG +S+ ++ DL   D+      W+    +  A      ++PRW  A CAV      K FVFGG+    +  N QGT +NDL VL+     W  P E+ GVPP  RSD  + Y D    LL+FGGWAN WL+D+F L V  +VGP Y +  V P+ G +TGG AL + G  FA    +++RF  R   VDV G +++   +    PD  A   P G++++R +L G  FT     ++ F VT + +CF YGPGVL GG SG  T FIIQ RDA    R  GGDEF + +
Sbjct:  161 PAPRGAHSAVAIRRSIYVFGGYGGTGYGRRDFDDLYVLRT---------DDLSWTKVTCKGKPPEKRAGHQACAVDDMMLVCGGWNSVTQFNDLHVFDSLVNS--WTLVEGTHMA-----TTLPRWNHASCAVLAIPHAKVFVFGGVVAEPNNYNAQGTYMNDLCVLDTGDMTWSVP-EIEGVPPCGRSDTILVYDDKGSRLLVFGGWANVWLNDMFYLDVSCVVGPPYGITGVFPDFGPITGGTALVIEGIDFA-NKPLIIRFSCRKGAVDVPGEYVNDHTLHVIAPDFTA--YPAGDVQIRVALQGDSFTTTFQTYSYFAVTYAPLCFAYGPGVLSGGASGEPTSFIIQTRDAQRNVRTRGGDEFLVEV 511          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig192.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2QUS9_9STRA4.360e-9833.12Hypothetical protein n=1 Tax=Triparma pacifica Tax... [more]
D7FW50_ECTSI1.220e-9644.86Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A5D6XMM7_9STRA3.150e-8734.15Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
G4Z963_PHYSP3.470e-8035.63Uncharacterized protein n=16 Tax=Phytophthora TaxI... [more]
A0A482SZA8_9ARCH1.530e-7739.89IPT/TIG domain-containing protein n=1 Tax=archaeon... [more]
A0A6A4FJ90_9STRA6.720e-7740.16IPT/TIG domain-containing protein n=2 Tax=Phytopht... [more]
A0A421GTM9_9STRA8.660e-7640.70IPT/TIG domain-containing protein n=3 Tax=Phytopht... [more]
A0A329SG04_9STRA7.870e-7440.16Dynein alpha chain, flagellar outer arm n=15 Tax=P... [more]
A0A8K1C5R7_PYTOL1.920e-7341.16Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662XS64_9STRA5.900e-7340.70Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig192contigP-wetherbeei_contig192:7724..12249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FW50
Preferred nameODA-DHCA
PFAMsAAA_5,AAA_6,AAA_7,AAA_8,AAA_9,DHC_N2,Dynein_heavy,Filamin,Kelch_2,Kelch_4,Kelch_5,MT,TIG
Model size2384
Max annot lvl2759|Eukaryota
KEGG koko:K10408,ko:K10706,ko:K20285
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005929,GO:0031514,GO:0042995,GO:0043226,GO:0044464,GO:0120025
Exons11
Evalue5.24e-110
EggNOG OGsCOG5245@1|root,KOG1230@1|root,KOG1230@2759|Eukaryota,KOG3595@2759|Eukaryota
Descriptiondynein light chain binding
Cds size2034
COG categoryZ
BRITEko00000,ko00001,ko01000,ko03021,ko04131,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig192.5.1prot_P-wetherbeei_contig192.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig192 7849..11669 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186166.1388824-UTR-P-wetherbeei_contig192:7723..78481683186166.1388824-UTR-P-wetherbeei_contig192:7723..7848Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig192 7724..7848 +
1683186166.2412078-UTR-P-wetherbeei_contig192:11669..116951683186166.2412078-UTR-P-wetherbeei_contig192:11669..11695Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig192 11670..11695 +
1683186166.250563-UTR-P-wetherbeei_contig192:11869..119221683186166.250563-UTR-P-wetherbeei_contig192:11869..11922Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig192 11870..11922 +
1683186166.2676442-UTR-P-wetherbeei_contig192:12103..122491683186166.2676442-UTR-P-wetherbeei_contig192:12103..12249Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig192 12104..12249 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186166.152177-CDS-P-wetherbeei_contig192:7848..81931683186166.152177-CDS-P-wetherbeei_contig192:7848..8193Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig192 7849..8193 +
1683186166.1619055-CDS-P-wetherbeei_contig192:8395..85501683186166.1619055-CDS-P-wetherbeei_contig192:8395..8550Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig192 8396..8550 +
1683186166.179831-CDS-P-wetherbeei_contig192:8703..92491683186166.179831-CDS-P-wetherbeei_contig192:8703..9249Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig192 8704..9249 +
1683186166.1909406-CDS-P-wetherbeei_contig192:9415..96281683186166.1909406-CDS-P-wetherbeei_contig192:9415..9628Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig192 9416..9628 +
1683186166.1981812-CDS-P-wetherbeei_contig192:9767..99091683186166.1981812-CDS-P-wetherbeei_contig192:9767..9909Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig192 9768..9909 +
1683186166.2059102-CDS-P-wetherbeei_contig192:10274..104871683186166.2059102-CDS-P-wetherbeei_contig192:10274..10487Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig192 10275..10487 +
1683186166.2141922-CDS-P-wetherbeei_contig192:10738..109471683186166.2141922-CDS-P-wetherbeei_contig192:10738..10947Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig192 10739..10947 +
1683186166.2228084-CDS-P-wetherbeei_contig192:11215..113621683186166.2228084-CDS-P-wetherbeei_contig192:11215..11362Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig192 11216..11362 +
1683186166.23172-CDS-P-wetherbeei_contig192:11605..116691683186166.23172-CDS-P-wetherbeei_contig192:11605..11669Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig192 11606..11669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig192.5.1

>prot_P-wetherbeei_contig192.5.1 ID=prot_P-wetherbeei_contig192.5.1|Name=mRNA_P-wetherbeei_contig192.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=678bp
MRELSWLKLSPGSDGRAPTPRSGHTMTTVGQNIFVFGGMAVKAPGTEKPA
EEAVASRPRSAFFIDQSLTQDGGGDGGQPLLFGEGTLGAQPVPSDELWLL
KLGSRGSEWRECVKKPRSALQRRDPGNGRLASANGALSTVQWPCPRWGHT
ATDLGDSRILVIGGFASSKLRLGDAWAYRTIARSWDRVWPPPPPSSSTVD
SGTTSRGKTASLARGLALVSVSSSSGCFATSAAAFTTSGAVASRGNGDWS
PEDAAGGGVAAAASPSPRGGHCAVLIGGRVWLFGGYGGWDYRRQDLDDLW
TLTAGGGGTEGGDDGARWMFMSARGPAPAPRSGHGAVAADGIMLVFGGRS
SLREYEDLSALDTNQEPPVWSCCAASPGAGGGGFMSVPRWGAACCAVQTT
AGWKAFVFGGLGGSASEDNRQGTPLNDLLVLEPDSRRWRAPPEVGGVPPL
PRSDAAITYHDGKGILLLFGGWANGWLDDLFSLPVGPLVGPAYSLLAVSP
ERGAVTGGAALELSGDGFAPTDDVVVRFGVRGKHVDVQGVFISRTKISCT
VPDLLAAGLPPGEIEMRASLAGGGFTVVAVIFTAFPVTVSSMCFVYGPGV
LEGGCSGRETVFIIQARDADGQNRQFGGDEFDIVIRPASARSERGSDNDG
GGPARSFRAAAVAAAARRLLPACRSGG*
back to top

mRNA from alignment at P-wetherbeei_contig192:7724..12249+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig192.5.1 ID=mRNA_P-wetherbeei_contig192.5.1|Name=mRNA_P-wetherbeei_contig192.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4526bp|location=Sequence derived from alignment at P-wetherbeei_contig192:7724..12249+ (Phaeothamnion wetherbeei SAG_119_79)
CGTAACGGTAGCAAAACGAAGCGAATGAGAAGAGTAACGAGATCCCTCCA TTCTAAGAGTAACGAATTACTGTGGATTTCTGGAACCGTCCAACTTGCCT TGGAATAGGCTGGAGTTCGGCCAACATGCGAGAGCTATCCTGGTTAAAGC TCTCTCCAGGAAGCGATGGTCGTGCTCCCACTCCTCGCTCAGGCCATACG ATGACGACAGTCGGGCAGAACATCTTCGTCTTTGGAGGAATGGCAGTAAA GGCCCCGGGAACGGAAAAGCCTGCTGAAGAAGCCGTTGCCTCTCGACCGC GTTCCGCCTTTTTCATCGATCAATCGTTGACGCAAGATGGTGGTGGCGAT GGCGGTCAGCCTCTGCTGTTTGGCGAAGGAACTCTTGGCGCTCAGCCCGT TCCTTCAGATGAATTGTGGCTCCTCAAGCTTGGATCAAGAGGTTCCGAGT GGCGAGAATGCGTCAAAAAGGTGAACCGATCGTTGCCGATCTCGTCTTAG TTACACCATTCGCCTCTTATTGTTTCGTTCGCTGCCACTTTTAGATATGT GTGCTCCTGAACGTTCGTTGTTCTTGTCCGTTCCGACCCTCATCATTCCT TTCCGCTTTTTGTGCATCCCCTCCCCCCCGATGCTCCTGCTCTTCTTTTT CGCCCATATTGCGCCTCGCCAGCCTCGTTCTGCGTTGCAAAGGCGGGATC CGGGAAATGGCCGACTGGCCTCCGCCAATGGCGCGTTGTCCACGGTGCAA TGGCCATGCCCACGCTGGGGACATACGGCGACTGACCTTGGAGATTCGCG TATTCTGGTCATCGGCGGCTTTGCCAGGCAGGAGATGTCGGAATCTTTGC GATTCCGATCGATGGTTTTCTATACTATTTCCGTTTTCATTGAATGTTCT AATTTTAGCGCTTCCTGATCGTGCCATTCCATCACTTTGCTTATGCCACT GTGTTTTACCCGTTTCCTTTGTGTCACCAGCTCAAAGCTGCGGCTGGGAG ACGCATGGGCCTACCGCACCATCGCACGTTCCTGGGACCGCGTCTGGCCA CCGCCGCCACCATCATCATCAACCGTCGACTCCGGGACCACGAGCCGCGG GAAGACCGCTTCCCTGGCGAGAGGGTTAGCACTGGTCTCTGTCTCCAGCA GCAGTGGCTGTTTCGCTACTTCAGCCGCCGCCTTTACAACTTCCGGCGCC GTTGCCAGCCGCGGGAACGGCGATTGGAGTCCCGAAGACGCCGCCGGCGG CGGCGTTGCCGCCGCAGCCAGCCCCAGCCCGCGGGGCGGCCACTGCGCCG TCCTGATCGGCGGCCGCGTCTGGCTCTTTGGCGGCTACGGCGGGTGGGAC TACCGCCGGCAGGACCTTGACGACTTGTGGACCCTGACAGCCGGCGGCGG CGGGACCGAGGGCGGCGACGATGGGGCCCGGTGGATGTTCATGTCGGCGC GGGGACCGGCGCCGGCGCCGCGGTCGGGACACGGGGCCGTGGCGGCGGAC GGCATCATGCTCGTCTTTGGTGGCAGGTACGTTGAAAGGTGCGGAAAGAT GGCAGGCTTGCATTTCGAACTGGCTGACTCATGTACAAGCACTGCATCAA TCAATTTAATGTTTCTCTGTTGGTCTCGCCTGCCTGCGCCACGCCTGCTG CTGTTCGACGCTGTCGTCGCCCTGTTCTTCCGGGGGATTCAGGTCATCGC TGCGCGAATATGAAGACTTGTCCGCTCTCGACACTAACCAGGAGCCTCCT GTTTGGAGCTGCTGCGCCGCCAGCCCCGGTGCCGGCGGCGGCGGATTCAT GTCGGTGCCCCGTTGGGGCGCGGCGTGCTGCGCCGTCCAGACGACGGCCG GCTGGAAAGCGTTCGTTTTCGGTGGGCTCGGAGGCAGCGCCTCGGAGGAC AACAGGTGAAAAATAGGAGTTATCAGCTGCTTTAACTTTGCGCAAGTCTT CTCCTTTGGTGCTTGCCTTTTAACGATCCCTCGGTCAAAGGATTGAAAAT AATCTGTCTCCCTTTTTCTGCATGCATCGTTTCGGCCGGGCCAGGCAAGG GACGCCGCTGAATGACCTCCTGGTGCTGGAGCCGGACAGCCGCCGGTGGC GGGCCCCGCCAGAGGTCGGGGGGGTGCCGCCACTGCCGCGCTCCGACGCC GCCATCACCTACCACGACGGCAAGGGCATCCTCTTAGTAAGTCCTCTTTC GTGTTTCCTCGTGCAACCTTTCGGCTGCCTGCGCCCTCCACGGTGTTGGC GCTGTGTTGCGGACTGGGTACAGAGATAGATGCATCCATTCAGCGGCGGC GGCTTTTCTAGCGTCGTAGTATGGAATCGCTGGAGGGACCAGTACAGACG TTGTCGCATGAAATGATTTTTTGCGGCGGCTGCCGCAAGGGCGCCACTTT ATTCACGGAAACCATACCAAGTGCGCGAGAAGCTTGATTCAAATTCGTCT CTCTGCCCCTCTCCTGGCCATGTCACCGTCCCGACTCCACCCGTTCATCT GCCCCACCCCAATCCACACAAACTCCGTGGCCGGTTCGCACGCGCCCGCA GCTGTTCGGCGGCTGGGCAAACGGCTGGCTGGATGACCTCTTTTCGCTTC CCGTGGGGCCGCTCGTGGGGCCCGCCTACTCGCTGCTGGCCGTGTCGCCC GAACGCGGTGCTGTGACGGGCGGTGCGGCGTTGGAGCTTTCGGGCGACGG CTTCGCGCCGACGGACGACGTGGTAGTGCGCTTCGGGGTGCGCGGCAAGC ACGTCGACGTCCAGGCGAGCTTACCCGGAGGGGAAGAAAGGCTGTCTTTG AATATCTTGTCCGATCATTTTTTACTGCAAGGTCTTCTCACGCGGCAGTG ATTGAAGGGCTCTTGAATGTGATATTTGGGCTGTTGGGCTCTTTGCGCAG TTTCGCATTTACTTGCTAGCGCCATTTGTGATTAGTAGAAGTACTTCGTT GGCGAAAAACGGTTCGGTTCCGGCTTTCCTGCATACGTACTTGTCACGCT GCTTGCATCGTGCAGGGAGTCTTTATCTCGCGCACGAAGATCTCCTGCAC GGTTCCGGACTTGCTGGCTGCCGGACTGCCGCCCGGGGAGATAGAGATGC GGGCGTCGCTGGCGGGCGGCGGCTTCACCGTGGTGGCCGTCATCTTCACG GCCTTCCCGGTCACCGTCAGCTCCATGTGCTTTGTGTATGGCCCCGGTGT GCTCGAAGGGGGCTGCTCCGGCAGGTGCGTAGGTCGGCAGATCGAGGGCG GAGGGGTTTTGCAATGGCAGCAGCCGTGGCTGCTGGGATGGTGGCTTGTT GCGGCGGCGGTGGCGGCGGGTGTGACTGCAGCGGCGGTTTTGGTGGAGCG GCTGCGGCGGCGCTGGAAGCACAGCGGCTGTGGTGGCGCCGCAGGAGCTC CCTTTCCATCCATTTGGAAGTGATATAAGGAACGATCAATTCTTCTCCTG ACCAAGTTGACTTCTCCGTCTGCCGGCATGCTGCTCCACCAGGGAAACGG TGTTCATCATCCAGGCGCGGGATGCTGACGGCCAGAACCGCCAGTTTGGC GGCGATGAATTCGACATAGTCATTCGGCCTGCCTCCGCGCGGTCGGAGCG GGGAAGTGACAATGACGGCGGAGGACCGGCGAGGTCTTTGCAGGAAAGCT CCTGGTTTCTTTGTTCGTGTGTATTGCGTGGGGATGGGTGTCTTCAGCGC TCTTTCTTCTGACGTGGAATGCGGCCGAAACTGTACCGGCCAATTGGGAT CCTCCTGCTTTTTCTCCTATCAAGATTCTTTCTTGGCGTTCTTCATGCTC TTCTTTTCACGCTCGTTTTGCTTTGCTGACGCACGGTTTCGATGTACCTC GTCCCAATTTCCCCATAACGGCGGAGCGTGAGCAGGGCAGCGGCTGTGGC AGCGGCAGCAAGACGGCTTCTCCCCGCGTGCCGGTCCGGCGGATGATGGA CCACGGCGACGGCACGTACACGGTGAGGGCACTGCAACAGTCAGGCCCGG AGCTGCTGGCGGCGGCCTTCACGCTTTGAGCACCGTGGTCTCGGCGCTCG CTGTTTGCAACTCGCCTTTGCGCTGCCTGCTGCCTCAACGTTTGTGTGCA TCAAGGTCAAGGACGCGCTCTCCGTCAATTTTTGTGTGTCGGACAGGTCT GGTACGTGCCACCGACGCCGGGAAAGTACGAAGTCTCCATTGACTACAGG TAAGCTGACAACCTTTTTTTCCGCCAGGAGCGGCGTCAGCGCTGGCTACC TTGTAAATGCTTTGAGAAGGGCTTGTTCATTGACCGTGCACGCTGGTGAC GGATGATTGAGTTGCCCGCCTCCAGCGTTTCCGATTTCTCTACAAAAGCT GCTGGCTTTCTTCCCATTGGGCTGTCGCAGGGGGAATTTTGGCGGCATTC CGGGGCCCGTGGCGGGCAGTCCTGCCATCGCCGGCTTTTTGGCGAGCGCC CCTCCTGCGTGCAACACCATGCAGGGGGACAACGTCCTCAAGGTGTTAAA GGAGGACGTTGCTTCGCTGCTGAAGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig192:7724..12249+

>mRNA_P-wetherbeei_contig192.5.1 ID=mRNA_P-wetherbeei_contig192.5.1|Name=mRNA_P-wetherbeei_contig192.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2034bp|location=Sequence derived from alignment at P-wetherbeei_contig192:7724..12249+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGAGAGCTATCCTGGTTAAAGCTCTCTCCAGGAAGCGATGGTCGTGC
TCCCACTCCTCGCTCAGGCCATACGATGACGACAGTCGGGCAGAACATCT
TCGTCTTTGGAGGAATGGCAGTAAAGGCCCCGGGAACGGAAAAGCCTGCT
GAAGAAGCCGTTGCCTCTCGACCGCGTTCCGCCTTTTTCATCGATCAATC
GTTGACGCAAGATGGTGGTGGCGATGGCGGTCAGCCTCTGCTGTTTGGCG
AAGGAACTCTTGGCGCTCAGCCCGTTCCTTCAGATGAATTGTGGCTCCTC
AAGCTTGGATCAAGAGGTTCCGAGTGGCGAGAATGCGTCAAAAAGCCTCG
TTCTGCGTTGCAAAGGCGGGATCCGGGAAATGGCCGACTGGCCTCCGCCA
ATGGCGCGTTGTCCACGGTGCAATGGCCATGCCCACGCTGGGGACATACG
GCGACTGACCTTGGAGATTCGCGTATTCTGGTCATCGGCGGCTTTGCCAG
CTCAAAGCTGCGGCTGGGAGACGCATGGGCCTACCGCACCATCGCACGTT
CCTGGGACCGCGTCTGGCCACCGCCGCCACCATCATCATCAACCGTCGAC
TCCGGGACCACGAGCCGCGGGAAGACCGCTTCCCTGGCGAGAGGGTTAGC
ACTGGTCTCTGTCTCCAGCAGCAGTGGCTGTTTCGCTACTTCAGCCGCCG
CCTTTACAACTTCCGGCGCCGTTGCCAGCCGCGGGAACGGCGATTGGAGT
CCCGAAGACGCCGCCGGCGGCGGCGTTGCCGCCGCAGCCAGCCCCAGCCC
GCGGGGCGGCCACTGCGCCGTCCTGATCGGCGGCCGCGTCTGGCTCTTTG
GCGGCTACGGCGGGTGGGACTACCGCCGGCAGGACCTTGACGACTTGTGG
ACCCTGACAGCCGGCGGCGGCGGGACCGAGGGCGGCGACGATGGGGCCCG
GTGGATGTTCATGTCGGCGCGGGGACCGGCGCCGGCGCCGCGGTCGGGAC
ACGGGGCCGTGGCGGCGGACGGCATCATGCTCGTCTTTGGTGGCAGGTCA
TCGCTGCGCGAATATGAAGACTTGTCCGCTCTCGACACTAACCAGGAGCC
TCCTGTTTGGAGCTGCTGCGCCGCCAGCCCCGGTGCCGGCGGCGGCGGAT
TCATGTCGGTGCCCCGTTGGGGCGCGGCGTGCTGCGCCGTCCAGACGACG
GCCGGCTGGAAAGCGTTCGTTTTCGGTGGGCTCGGAGGCAGCGCCTCGGA
GGACAACAGGCAAGGGACGCCGCTGAATGACCTCCTGGTGCTGGAGCCGG
ACAGCCGCCGGTGGCGGGCCCCGCCAGAGGTCGGGGGGGTGCCGCCACTG
CCGCGCTCCGACGCCGCCATCACCTACCACGACGGCAAGGGCATCCTCTT
ACTGTTCGGCGGCTGGGCAAACGGCTGGCTGGATGACCTCTTTTCGCTTC
CCGTGGGGCCGCTCGTGGGGCCCGCCTACTCGCTGCTGGCCGTGTCGCCC
GAACGCGGTGCTGTGACGGGCGGTGCGGCGTTGGAGCTTTCGGGCGACGG
CTTCGCGCCGACGGACGACGTGGTAGTGCGCTTCGGGGTGCGCGGCAAGC
ACGTCGACGTCCAGGGAGTCTTTATCTCGCGCACGAAGATCTCCTGCACG
GTTCCGGACTTGCTGGCTGCCGGACTGCCGCCCGGGGAGATAGAGATGCG
GGCGTCGCTGGCGGGCGGCGGCTTCACCGTGGTGGCCGTCATCTTCACGG
CCTTCCCGGTCACCGTCAGCTCCATGTGCTTTGTGTATGGCCCCGGTGTG
CTCGAAGGGGGCTGCTCCGGCAGGGAAACGGTGTTCATCATCCAGGCGCG
GGATGCTGACGGCCAGAACCGCCAGTTTGGCGGCGATGAATTCGACATAG
TCATTCGGCCTGCCTCCGCGCGGTCGGAGCGGGGAAGTGACAATGACGGC
GGAGGACCGGCGAGGTCTTTCAGGGCAGCGGCTGTGGCAGCGGCAGCAAG
ACGGCTTCTCCCCGCGTGCCGGTCCGGCGGATGA
back to top