mRNA_P-wetherbeei_contig192.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig192.1.1
Unique NamemRNA_P-wetherbeei_contig192.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig192.1.1 vs. uniprot
Match: A0A7S2UXU1_9STRA (PRA1 family protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXU1_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.250e-10
Identity = 48/155 (30.97%), Postives = 70/155 (45.16%), Query Frame = 1 
Query:    1 IRRLGWRDARPWAEFTAEFKAPRAWARATLEPRVLTNLLYYRGNYALITVACIAAAVATTPQLFLAGAVAAGAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLVAVSWVRTQLLRLFCAAAVGVAISLGHAALRPRNIRSRANRAAEEAKL 465
            +++ G +  +PW EF A FK P+ W + +LE R+ TN L+YRGNY  + VA     V   P + L  AV                                   +L + + W  T L RL    ++G A+ + H  LRPR + S+ NR  EEAK+
Sbjct:   20 LKQFGLKSMQPWGEFFARFKPPKRWDQTSLEQRINTNYLHYRGNYLFVMVAVTLLHVVLAPVMALVLAVCVCGFILLAPPSGREVRVGQRLLSRNEGLVLASIGSLALLL-WSGT-LYRLLMVLSLGFAVCVAHMVLRPRTLGSKTNRFMEEAKV 172
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig192.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2UXU1_9STRA2.250e-1030.97PRA1 family protein n=2 Tax=Fibrocapsa japonica Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig192contigP-wetherbeei_contig192:822..1782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size465
Hectar predicted targeting categorysignal anchor
Exons3
Ec32 ortholog descriptionPrenylated rab acceptor PRA1
Ec32 orthologEc-21_005900.1
Cds size465
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186165.9229095-CDS-P-wetherbeei_contig192:821..9731683186165.9229095-CDS-P-wetherbeei_contig192:821..973Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig192 822..973 -
1683186165.9310095-CDS-P-wetherbeei_contig192:1236..13791683186165.9310095-CDS-P-wetherbeei_contig192:1236..1379Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig192 1237..1379 -
1683186165.938454-CDS-P-wetherbeei_contig192:1612..17821683186165.938454-CDS-P-wetherbeei_contig192:1612..1782Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig192 1613..1782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig192.1.1prot_P-wetherbeei_contig192.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig192 822..1782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig192.1.1

>prot_P-wetherbeei_contig192.1.1 ID=prot_P-wetherbeei_contig192.1.1|Name=mRNA_P-wetherbeei_contig192.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=155bp
IRRLGWRDARPWAEFTAEFKAPRAWARATLEPRVLTNLLYYRGNYALITV
ACIAAAVATTPQLFLAGAVAAGAVAVLLPQDGGDDLIIAGRHFDNNERMF
LLAAALLVAVSWVRTQLLRLFCAAAVGVAISLGHAALRPRNIRSRANRAA
EEAKL
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mRNA from alignment at P-wetherbeei_contig192:822..1782-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig192.1.1 ID=mRNA_P-wetherbeei_contig192.1.1|Name=mRNA_P-wetherbeei_contig192.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=961bp|location=Sequence derived from alignment at P-wetherbeei_contig192:822..1782- (Phaeothamnion wetherbeei SAG_119_79)
ATCCGGCGCCTTGGCTGGCGCGACGCGCGGCCGTGGGCCGAATTCACTGC
GGAGTTCAAAGCTCCTCGCGCCTGGGCTCGCGCGACCCTTGAGCCGAGAG
TTCTCACGAACTTGCTTTATTATCGCGGCAACTACGCGTTGATTACTGTC
GCCTGCATCGCTGCTGCCGTGTAAGTGCGTTGTCATTTTTCGCCCCCACA
GATTCACCTATGTTGGCCTTCAGATGTGTCACTTTTGCCCGCTTTGCCAT
TGCGTGTCTTTTTTGTTACGGCCCGGCCTTTGTTCTTGTCCACCTGCTTG
GGTTCACAGAGTGTTTCCGAAATAGAACAGTGTATATGGTATTTCATCGT
TCGGGGGTTCTTATCATCGCTGAGAAGCGCTCCTTCCTTCCTGGCCGCAA
CAGGGCCACGACGCCGCAACTCTTCCTCGCCGGAGCGGTCGCCGCCGGGG
CCGTGGCTGTCCTGCTCCCACAGGACGGTGGTGACGATCTGATTATCGCC
GGCCGTCACTTCGACAACAACGAACGCATGTTCCTGCTGGCGGCAGGTGC
GCAATGGCGGGGCTTGTTCGATACGCGCTCTTTCTGGTGGGAATCATGGG
GCCGCGATGCACAGGGGGAAGCGTCGTTTTTACACACGTAATACCAGATA
CCGGTTTGGCTCGCTCCCTCCTAGTGTAGTTTAGCCGCTCCCTCCTAGTG
TAGTTTAGCCGCAACGCACTTTTGCTTGCTTAGTGCCAGCCAAAACCACG
AATGTGGTGTCCCCTTACCAACTATCGCATTTTGTCTTTGCTGCATCTCA
AACCACCAGCGCTCCTCGTAGCGGTTTCGTGGGTCCGGACGCAGCTGCTG
CGCCTCTTCTGCGCCGCCGCCGTGGGGGTCGCAATCTCCCTTGGCCACGC
GGCGTTGCGGCCGAGAAACATCCGCAGCCGCGCAAACCGTGCAGCGGAGG
AGGCGAAGCTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig192:822..1782-

>mRNA_P-wetherbeei_contig192.1.1 ID=mRNA_P-wetherbeei_contig192.1.1|Name=mRNA_P-wetherbeei_contig192.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig192:822..1782- (Phaeothamnion wetherbeei SAG_119_79)
ATCCGGCGCCTTGGCTGGCGCGACGCGCGGCCGTGGGCCGAATTCACTGC
GGAGTTCAAAGCTCCTCGCGCCTGGGCTCGCGCGACCCTTGAGCCGAGAG
TTCTCACGAACTTGCTTTATTATCGCGGCAACTACGCGTTGATTACTGTC
GCCTGCATCGCTGCTGCCGTGGCCACGACGCCGCAACTCTTCCTCGCCGG
AGCGGTCGCCGCCGGGGCCGTGGCTGTCCTGCTCCCACAGGACGGTGGTG
ACGATCTGATTATCGCCGGCCGTCACTTCGACAACAACGAACGCATGTTC
CTGCTGGCGGCAGCGCTCCTCGTAGCGGTTTCGTGGGTCCGGACGCAGCT
GCTGCGCCTCTTCTGCGCCGCCGCCGTGGGGGTCGCAATCTCCCTTGGCC
ACGCGGCGTTGCGGCCGAGAAACATCCGCAGCCGCGCAAACCGTGCAGCG
GAGGAGGCGAAGCTT
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